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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0617400 |
| Transcript ID | LotjaGi1g1v0617400.6 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116401585..116409831) extracted from Lotus japonicus Gifu genome v1.2.
CACTCCATGTTTCCTATGAAGCTCTGGGATGGTTTGCTTTTGTTTGCTGGTCCATCAGTTTCTACCCACAAGTCATCTTG AACTTTCGAAGGAAAAGGTACCAGCCCAAAAAGCAATATTTTATATTATCATCATGTGATTTTCTCTACAAATTAATTAA TCTTATAAATTATCTTGCTTTTCTTTTAGGCTTTCTTTTTATTTGGTTTTCTTTTGTGTTATAGTGTGGTGGGGCTGAAC TTTGATTTCATAGTGCTGAATCTGACCAAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCAT TCAGAAACAGTATAGAGAAAAATACGGAGAGAAAGAGGTTTGTTCTTGTTATTAGTACTGATATGTCTGTTTTCCTTTTG GAAGCTAAATTGATGACTCAATTTCCTCTCTGTTTTAGATTAAAAATTGCTGATAATGTTAATGGACAATGTTGAACAAG GCACAATTTAGTATTAATGATATCAATTTAGTTACTCTTTGTATGAGTGGAAGCAAAAGTGCAAAACTAAACATTCATGT CGAGAAGTCTCATATTGACTAGAGATATGATACGGCCAAAATAGTTCTTATAAAGGATGTATTAACCCTCCATCTCAATC AAGTTTTGGGGTAGCGTTAGGCCTAACCCAAATTGTAATAGTGAGTCTAGCTTCTAAACGTTCAGAATTGATTCGGAACC TCTAATTGTCGATCTAAACACTGGTAGTTAAATGTTAGCAGAGATCTAACTTCTTTTCTTTATTGATTATTTCAGATGAT ACCTGTGGCAGCAAATGATGTTGCTTTCTCAATCCATGCTGTTCTTTTGACAGCAATTTCCTTGTTCCAGATTGCAATCT ATGATGTTAGTGCTGTGTTCCTTTTCATTGAGTTTTTATACAATGTTCTTTGGATTAATGTATGATATTCATCATGAAAG TGGATATATTTTCGGATTGTGCAGCGTGGAAGTCAGAAAATCTCTAAAGTTGCTTATGGGATCCTCCTTGTTGCGTGGTC GACCGCTGCAGTGTGTTTCTTTATAGCCTTGCACAACCATCATTGGCTCTGGCTGCTCTCAATCTTCACGTATGTTGTGT GTTTTCATTTGTTACAAGTTAACTTCCTGTTGTGTATGATGGTATTTTAGAATTTCTTTCTGACTTGTGTTGAAACTAAT CAACTTGCAGTGCTATCCAAATCTCTATGACGGTTATCAAATATATTCCACAGGTTAGGATCAATTCAAATTTGTATAAA TTCCTTTTTAATTTCTGTATCCCTATGTTTCTATTGATGCCTGTAATGTTCAATTTGATTGCTGAGATTTTTATTAACTG TTTGAACTAAGTAGCCTATAAAAATGTGCTAGTGCTATCATCAATGAACCTTTCTTTGAAATGCATGTGCATAATCTGAA GAAGAGCTACTTACTGACTTTTCTTTGATGTAGTGCTTGTTTTGATACACGATGGGAAACCATAGTGAAACCAAAATCAC GAAGGACATAAGCAACTTCACTTAGCTTTCGCGGCTGTCCACCATGATTTTGGTCTCATCGTGGTTCTCACCTTGTATTC AGACATGCACATAACAATAGAGGATTGTTTTATGTTTCCTTGGTCAAAAGTGGACAAAATTTCTTTTCCCTAAAGTTATG TTACTCATCCATCTTAACACATTGTGTTGTGAATGTAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGC ATTGGCAACATTCTACTAGACTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAGTGCAATCAATAGATCAAGGTCT GTCACTGTCATAGACATTACTAGGCAATCTTCTTGTCTGAGTTTAAAGATTGAACTGACATAATTTTGAAATTTTCATCT TTGATTTTCAGGTTCTTGGGTGAACTTCTATGGAAACATTGGAAAACTACTCATATCCCTGGTACGAATCATACTTCAAT TTTTCTATATCAATCAGTACTCACCTTCTTTTAAGTTTTTATTCTGATCCACTATTTTTCCTTCCTTTTATTAGAGAATA AAATGAATTTCTTGGATAAAAATGCTACATGCCTAGTTGCCTACAATTCAAGTTTATAAACAGGGTCTTGGATTGAAAAT CAAATGTTTAAGCTCATATAACATTGCTAACTGATGGAATAAATCAACCATTGCAGGTATCTGTATTCTTTGACATCCTC TTCATGATCCAACACTATCTGCTATATCCTGCTTCAAAACGCAAATCAAAGACATCTCCTGACCTTGATAATCCCAAGTC TTCAAATAGGCAACTGTCTGATAATGTTTAGGATGTAACTTTTTTTTAATACTTCAAGGAATGAAATTTTCTAGCTATTT GCAAATTATCCTATTGGGAGAAAAATAGATAGAATATATATATATCTTATTAATTAATCTGTGAAGTAGGCATATCCCGA TTAGCTTTTCTCCAGTTATTAGATGAACAGATTAAAGGTTTCCCATGAGAAGAACATTTAAGTCATTTAAAATGTAAACT TGTTACTCCAATTTTAAACCAGTTTTAAGCAATAAGGCTGTCACGCGATCACGCCCATTGCCTGTGACTACCATGAACGA CAGCTTTTGAAGATTAATTTGGGGAATGAATGTCTTGGTTTTGTGTTTATTGGATATTAGTGCTTATTGGTTCTATGTTC ACGCTTGAAGATTCAATACTATTAGCCTTTGCCCTTTGGTGAAACTTGCAGAAATCATATCCAATGTCACATAGAGGATT AAGAAATGGGGCGCTAAAAGAAAATGGCTAGAGTCATTAACAAGGGAAGAAGGTCACGTGACTCACTAATCTGAACATAT TACATCCTAGATTAAATGAGATCAATGGTGGAAAATTAGTGTAAGAGTGTAAGATTTATAAGAGTGTAAATTTAGCCCTG CTCTTGAAACTTATGTCAGTTTCATTAAATTGTCAGTCCTTTTTTATCCAGTAAATTACATGGATCTTACTCCTAATTTC ATGAGAGCAAAATATATATTTTCACAGCACATTTATCTTTCACGGGAGCCAATCGGTATGAATCATTACTTAAGAAAAAT CAAATATGGATCGTTTTAATCAACCACGTGTTAGTATAATATTCTAAGTAGTTTTGAACTGAAAAGACCAAGATTAATTT GTTTTCAAAACATAAATCTAAATAATATTTAATTTTCAAAAAAATATTAAATTAAAAATAGGGTTAATCTTCAAATTAGT CATTGTATTTGTGTCGCCGTCTAAAGTAGATCTCTCGTCGGAAAAGTTATTGAAAATGATCGCACTTGTTATAAATTGTT TGGGGCAAGTCATCGTCGGAATCCGGAGCTCCGACGAGAGATGATTTGGCTAGCCGACATGGAATGAAAAAAATTAAAAT ATTTTACATGTCAGTTTTATTAATGTAATTAACAAAATTAAACCCTAATTAACTAACTAACCCTAATCTAATTAACAAAA TAAGTTTCCCCCCAAATTGTCTCCAAAATCCCCCTAGAATTAACTCAAATTCCAAATCAGAACACCCTCAAATTTGAACC CTAATCGTTTTCCATCTTCAATCATCTTTCCTGAACCTCCATCGACATCATCTTCACCCCCAATTTTCATCATCTCATTA ATTATTATCTTATTGGGGTCTAACCCGCCTCTCTTTGAGGATTAATTTTACATATAATGTACATAATGTAGGATAAGAGA TAAAGTTATACGCTACAAGCACAACAAATAAGATATTATTATTCTGTTATCTTACTTTATCTTTTTATTCTATGCATCAA AGAACCCAAAATTAAAACAATAAGTAGTTGTTATTTTCCCTTTATGGGTTCAACTGTATATATGACACATACCATCTCTA GCAGGTAGAGGAGTGTGGTATATAGAGAACAAGAAATTTTCATTTTAAAACTATTTTATCTAAATTATTTATTAATGAAT TTATTTTATTGTTAATTTTAGTTCTTAATATTTGTCATTAAAGTCAATTTTTAAGTTTATAATTTTTTTTATTTAATGTT TGGTAGTTTTTTTTACGGTCTAATTAATGTAGGTAGTTAAATAGTTTTTTTTCTCGTTACAATACAATTTTTCCATGTTT TTAATTTTATTATTTAATATATTTATTACAAACCAATTTTTTTTCTTAATGTATTTTGATAGAAAGGTAAAGAATTGTTA TTACTTAATGTATTTAATTCAAAAATTCAAGATTTTACATATATATATTTTGATGATACGTAAAATTTAAAGTTAACTGG GGCAGCAGTAGTAATTGATAAGAAAAAAGTTATTCCTTTTGAGTTAAAAAAATATTCATTTTTTATGAATTAGTCGTTTT TTATTAAATTTATGAATAAATAAATAATTTTAACTTAGTAGCATTAATATATTATAATAATTAGTATTTTTATATTTATA AATTAGTATATTATTAATTATAAAAATCTATATATTGGAATAATTTTAATTTGGGATGAAGTTAAAAAGGGAATAGAAAA TTGCTATTTTATCTTATTAGATTCTAACCACGCCTCTCCATGATGATTTTTTTTTGACGGAAAATTATCGGAAGAATATC CAAGAGGATACATGATTGAATACATGGAGGAACACATTGAAACCAAGACTCATCTCCATGATCCAGAGAATATTTTGCAG CACATCAGCTGATTTATTTGCTTGTCTAAAAACATGCACAAAGGAAACAAAACTAAAACTAGAAACTAATAACTTTTTAA AATTCAGCTGCTACAAGCCCCAATTACGTGTTACTGGACTTTGCCATTGGTTTGCTCTTTGATGACCAATTTACTATCTG ATTCAACCATTACCTTGCTAAAACCATGTTGCATTGCCAACCGTAGTCCTTCCAATACTCCCATAAGCTCGGCAACAACC ACTCCATGATGATTAATTTTACATATAATGGATATAATATGATAATATCTTTTTTTTAAAAAAAAAAATAAGAGATAAGA TTACATTATTATATCTACTAGCACAATAAAATAAAATAAAAATATGTGTGCACAACAAATAAAGATATGATTGTGTTATC TTACCATATCTTTATATCCCCATAAAACAAATCCTAAAATTAAAACAATAAGTAGTTGGTTCTTTTCCCTTTTTCGGTTG AACTGTGTACGTATAACATCTCTAGCAGGTTGAGGAGTGTGGTATAGAGAACGAGAAATTAGGTAAATTCACAATAGGGT TTGTACTTTGTATCTCCGTCCGTGAATGCATATTGAATGCATATTCAACAATAGGTTTGTACTTTGGAAATTAAACACCG TTCTTTAATGAGCACAGCCTAATTATAGATCATACAAATGTTCCGATTTTAGGAGTAACACATGAATAGTAAACTCAAAC ATGCTCCTTGGTCACAAATCCTGTCTCCATACACTCTCAGATTCATAATCCTAGAAAAAATGGTTTTCTTTAAATTTAAC GCCGATCCACGTTTGAATCAACGTGACACAAAATTAGATTGCTGTGTTGGAATGTGTTACAACCTGGTAACTAATCACAC TCCATTTTCTTTTGAACAGAGGCTATATATATTGGTATTGGTAATAGAGGTTCAAGAATCACATTTACGTGTGGGACACA ACTGTGACACTAAAAGAGAATATTGGGGGTCCACAACTCAATATACATTGAATTTGTTGGTTAATTTCTTCTCCTTGAAA GTGAGGGAAAAAATCTGAGAAAGAAGCTATGTCATCATCTTGGAATTCAGAACCACTCCATGTTTCCTATGAAGCTCTGG GCTGGTTTGCTTTTGTTTGCTGGTCCATCAGTTTCTACCCACAAGTCATCTTGAACTTTCGAAGGAAAAGGTACCAACTC AAAAAGCAATATTTTATATTATCATCATGTGATTTTCTCTACAAATTAATTAATCTTATAAATTATCTTGCTTTTCTTTT AGGCTTTCTTTTTATTTGGTTTTCTTTTGTGTTATAGTGTGGTGGGGCTGAACTTTGATTTCATACTGCTGAATCTGACC AAGCACACAGCCTATCTCATATACAATGCATCTTTGTACTTCAGCTCTACCATTCAGAAACAGTATAGAGAAAAATACGG AGAGAAAGAGGTTTGTTCTTGTTATTAGTACTGATATGTCTGTTTTCCTTTTGGAAGCTAAATTGATGACTCAATTTCCT CTCTGTTTTAGATTAAAAATTGCTGATAATGTTAATGGACAATGTTGAACAAGCTAGGCACAATTTAGTATTAATGATAT CAATTTAGTTACTCTTTGTATGAGTGGAAGCAAAAGTGCAAAACTAAACATTCATGTCGAGAAGTCTCATATTGACTAGG GATATGGTACGGCCAAAATAGTTCTTATAAAAGATGTATTGACCCTCCATCTCAATCAAGTTTTGGGGTAGCGTTAGGCC AAACCCAAATTGTAATAGTGAGTCTAGCTTCTAAACGTTCAGAATTGATTCGGAACCTCTAGGTGTCGATCTAAACACTG GTAGTTAAATGTTAGCAGAGATCTAACTTCTTTTCTTTATTGATTATTTCAGATGATACCTGTGGCAGCAAATGATGTTG CTTTCTCAATCCATGCTGTTCTTTTGACAGCAATTTCCTTGTTCCAGATTGCAATCTATGATGTTAGTGCTGTGTTCCTT TTCATTGAGTTTTTATACAATGTTCTTTGGATTAATGTATGATATTCATCATGAAAGTGGTTATATTTTCGGATTGTGCA GCGTGGAAGTCAGAAAATCTCTAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGTCGATCGCTGCAGTGTGTTTCTTTA TAGCCTTGCACAACCACCATTGGCTCTGGCTGCTCTCAATCTTCACGTATGTTGTCTGTTTTCATTTGTTAGTTAACTTC CTGTTGTGTATGATGGTATTTTAGAATTTCTTTCTGACTTGTGTTGAAACTAATCAACTTGCAGTGCTATCCAAATCTCT ATGACGGTTATCAAATATATTCCACAGGTTAGGATCAATTCAAATTTGTATAAATTCCTTTTTAATTTCTGTATCCCTAT GTTTCTATTGATGCATCTAATATTCAATTTAATTGCTGAGATTTTTATGAACTGTTTGAACTAGGTAGCCTATAAGAATG TGCTACTGTAAACATCAAAGAATCATATTTTGAAATGCTTGTGCATAATCTGAAGAAGAACTACTAACTGATTTTGCTTT GACGTAGTGTGTGTTTAGATACACGGTGAAAAATCACAATGAAGTTAAAATCATGTTGAACAGAACATAGAAGTAACTTC TCTTAGCTTTTGCGACTGTCCACCATGATTTTGGCCTCAATGTTGTTTTCACCGTGTATCCAGCACTTAATAATTGAGGA TTTTTTTGTGTTTCCTTGGTCAAAAAGTGAATGAAATTTCTTTTCCCTAAAGTTATGTTACTCATCCATCTTAACACATT GTGTTGGGAAAATATTATAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCATTGGAAACATTCTACTA GACTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAATGCAATCAATAGATCAAGGTCTGTCACTGTCATATACATT AGTAAGCAATCTTCTGAGTTTAAAGTTTGAACTGATGACATGATTTTGAAATTCTATCTTTGATTTTCAGGCTCTTGGAT GAACTTCTACGGAAACATTGGAAAACTACTCATATCCCTGGTATAGATAATACTTTTTCTCTGTTAATCTCCACTCACCT TCTTCAAAATTGTATTCAGAGCCCACAATTTTTCATTCCTTTTGTTAGAGAAAATGAATTTTTTGTATAAAAATACAACA AGCCTACAATTCAAGTTTATCAAATGTTTAAGCTCATATAGCTAATTTGCTAATTAACCATTGCAGGTATCTGTATTTTT TGACATCCTCTTCATGATCCAACACTATCTGCTATATCCTGCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATA ATCCCAAGTCTTCCAATAGACAATTGTCTGATAATGTCTAGGTTGTAACTTGTTTTACAATATTTCAAGGAATGAACTAT TTCTAGCTATTTGCAATTTTTCCTATTGGGAGAAAATTAGATAGAATATATATCCAACCCTTAAGTTGTAAATGCTATTA TAGTCCA
CDS sequence (LotjaGi1g1v0617400.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACCTGTGGCAGCAAATGATGTTGCTTTCTCAATCCATGCTGTTCTTTTGACAGCAATTTCCTTGTTCCAGATTGC AATCTATGATCGTGGAAGTCAGAAAATCTCTAAAATCGCTTATGGGATCCTCCTTGTTGCGTGGTCGATCGCTGCAGTGT GTTTCTTTATAGCCTTGCACAACCACCATTGGCTCTGGCTGCTCTCAATCTTCACTGCTATCCAAATCTCTATGACGGTT ATCAAATATATTCCACAGGCAGTGATGAACTTCATGAGAAAAAGCACAGATGGATGGAGCATTGGAAACATTCTACTAGA CTTTTCAGGAGGGTTAGGAAACTATTTACAAATGGCAATGCAATCAATAGATCAAGGCTCTTGGATGAACTTCTACGGAA ACATTGGAAAACTACTCATATCCCTGGTATCTGTATTTTTTGACATCCTCTTCATGATCCAACACTATCTGCTATATCCT GCTTCAAAACGCAAATCAGAGACATCTCCTGACCTAGATAATCCCAAGTCTTCCAATAGACAATTGTCTGATAATGTCTA G
Protein sequence (LotjaGi1g1v0617400.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPVAANDVAFSIHAVLLTAISLFQIAIYDRGSQKISKIAYGILLVAWSIAAVCFFIALHNHHWLWLLSIFTAIQISMTV IKYIPQAVMNFMRKSTDGWSIGNILLDFSGGLGNYLQMAMQSIDQGSWMNFYGNIGKLLISLVSVFFDILFMIQHYLLYP ASKRKSETSPDLDNPKSSNRQLSDNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 5.0E-95 | ||
| PANTHER | 1 | 174 | 174 | 5.0E-95 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| TMHMM | 10 | 29 | 20 | - | – | |
| Phobius | 28 | 38 | 11 | - | – | |
| Phobius | 39 | 58 | 20 | - | – | |
| TMHMM | 42 | 59 | 18 | - | – | |
| Phobius | 59 | 63 | 5 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 64 | 84 | 21 | - | – | |
| Pfam | 68 | 123 | 56 | 3.7E-14 | ||
| SMART | 81 | 112 | 32 | 4.9E-8 | ||
| Phobius | 85 | 95 | 11 | - | – | |
| Phobius | 96 | 118 | 23 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 119 | 137 | 19 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 138 | 159 | 22 | - | – | |
| Phobius | 160 | 186 | 27 | - | – | |
| MobiDBLite | 165 | 186 | 22 | - | – | |
| MobiDBLite | 172 | 186 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0617400.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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