Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0349900 |
Transcript ID | LotjaGi2g1v0349900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Conserved oligomeric Golgi complex subunit 6; TAIR: AT1G31780.1 oligomeric golgi complex subunit; Swiss-Prot: sp|Q3SZI7|COG6_BOVIN Conserved oligomeric Golgi complex subunit 6; TrEMBL-Plants: tr|G7K401|G7K401_MEDTR Oligomeric subunit 6; Found in the gene: LotjaGi2g1v0349900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82660026..82664551) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAACGACGGTGGCGGGTTTGGCGCCGGGGCTATCACGGAAGCTGAAGAAGGTTCTAGAATCGAGGATCGATACGCC GGATCTCTTGTCATCGCTCAACACGCTCTCTTCCTTCTACGATGACAACACTCCTCAGGCGCGCCGTAACCTCCGATCCA CCATCGAGAAGCGCGCTCTCTCCATCAACCATGAGTTCCTCGACGCTTCCCACGCCGTTCAACTGGTAATTCCTCTTCGC CGCCACCTTCTGTTTTCTTCGTATGCCACTGCATTGTATGAATTATGATTCACTTGCTTCTGCTGTTCTGATCTGGTTCA GTACCTTTTTATTGCAGGCATTGGATAGCGTGGAGGACGAGGTCAATGCGCTTGCCGAGTGCTGCGATAGGTGCGGTTTT CGATTTCAGTGTTCCTTAGTTGCCATTGGTTGTTTACATGTTTATCATCTGCACCAGTAGGAGATTTGTGTGTAGCTAGA TATTGTGTGCTTTGATTCCGAATGCCGTTGACTGGAGCTCGATTTCTGTGCTTTGTTGAGATATTGAGCTGCATCCGCTT ATGCAGTACATGCTTAGTCTTAGTAGGGCTCTTATATCAATTGTAGCTGAAAAATGTATTCAAAATGAGATAATAGGGGG GAAACGCGAGTAATTAATCCTTTCCCATCCAAGTAAAAAGCATCCAGTAGAGATATTGTTAACATTTTCACTAAAAATTT GTGAGGTATATGAGCTGTCAAATTAATGATTGTTTTGAATATTGGAGTAGGTTATTGGTTTTTAGGAACAATGTCACCTA TTTGTTGGAGAATGAAGTGTGCTTAGGCAATGGCTGATGTGTTTGTTTTCTAGGACCATAACTTAATTGAGAAACTGTAG GGTTGGATTTTTCATTTGCTACCCTGTGGGCTTGTATTATGCAGATGAAGGAGACTGATGCAGTTAGAAAGAGATAATTT CTCTTTGCTCAGGCATTCAACATTTAAGGGGGGAGGCTACACTAGTTATTAATCACTATTAGGATTACTATTTTCGTGAT TGTATCCCTGTAATTTTGTTATTCTGGTGCTTTGTACATGGATGCCTTTCACTCAAGCACAGATGAACGTTTCATTTGGG AAAAAATATGTTGCTCAGCACAAAGTGTGTCCAGAGTTCTTGTTCATATTTAGAATGCTACTAGGAATACTAGTGGGTGA TTTAGCAGCAATAATTTGGAAAAAATTATCAAGTTATACACAAGGAAGTTCCATGATAGCCAGTGTGCTAGAGTTGAGTA TGATTTGTGATCAAGATATTCAATTTTTGTATTTATTGTGTGGTGTTGGTGTTGGCTTATGATTCCTCCTTTTAGTTTAG GAGTTGTTTAGCACTTTGTTGGGTTTAGGATTTAAGTTCTGCCTCGTAGCATATCAAGTTTACCTTTGAAACGTATCATT GTCTCATTGTTATTTCAACGAGAATAATAAGTTATTTATTTTGCTAGCCAGTAGATCTTTCGATAAAATTTTAGGTTCTA TACTTTTACAGGATAGCAAAGTCTTTGAACAGTTGTAGTGCTAGCACCGGTGACATTATCAGTACCACAGAAAGGCTCAA ACAAGAGCTTGAAACTACTACACAAAGACAAGAGATTGTGGCATGTTTCCTGCGTGATTATCAGCTCTCCCCTGAAGAGG TTTAAGTTATTATCTGAATATCTGATGTCTTACCTATTATTGGACTATGGATTTGTGAATTAAATATGAGATCCATCTAT TATGTCATTTCTTACAATTAGTTTTTGATCATCTGTAGATAAACGCACTTAGAGATGAAGAGCTGAATGAAAACTTTTTC AAAGCATTATCTCATGTCCAAGAGATTCATGCCAACTGCAAAGTGTTGCTTAGGACACATCATCAGGTAATATTCTTGTC TACTCTACCCCCCCCCCCCAATTATGTGTGCAAATCTGCATATGTAATCCAAAGTCTGAAGTCTTCTAATTTATCATTCT GAAATTAATTGTAATCTTTATTGAACTGAGGAATTTCATTGCAGCGTGCTGGTTTAGAGTTGATGGATATGATGGCTGTG TATCAAGAAGGAGCTTATGAGCGTCTATGCAGGTGAAGACTCATCTATCTTTGTGATTTAAATACAAATATGAAGTGTAG ATTTTTCATCTTTTTATGTGCTGTTAGTCTGAATATCAAAGGGTTTTATGAGCTGTTTCTCTTAATTGAGATTGGCTAGT TTGATAATATATATAACTACTATAGTCTTTACTTCTAGGTGGGTTCAGGCCGAATGTAGAAGGCTGGGTGACACGGACAA TCCAGAAGTTAGTGAGCTTCTGAAAACAGCTGTACGCTACCTCAGGGAAAGATCTGTCCTTTTCAAGTATTGTGCAGAAG AGGTAATTTTGTTATGAATTTTATCAATTTATTGAAAAATTGTCAAATGTCATTTTTCATGCACCATCTAATGGTGACTA GGATAAAATAATTGCTTGAGGACCTTATCTTAATAAAAATATGGAAAGAATGTTCTTTGTTGTCAAATTGAAACTTTTAT TGTCCTTATCATCGTATGCGTGTGCTTCATAAATTCTTGATTAACTAATTTTGCAGGTAGCCAATATGAGACACAATGCA CTTTTTAGAAGGTTTATAAGTGCTCTTACACGTGGAGGCCCTGGTGGTTTGCCTCGACCAATTGAAGTGCATGCTCATGA CCCATTGCGATATGTTGGTGATATGCTAGGCTGGTTGCATCAGGTATGACATGTAAACTTGTCGATGAATGTTTGAAGCC TCTTCTAAATGCTGTTTTTCTACCCTGGTTTAATTTTTCAGCTTATAATTTTTGTATATGCATACAGGCCTTGGCATCCG AACGTGAACTTGTGCTTGTATTACTTGATCCAGATGCAAGTGTGGACACTGGACCGACAGCAAAGCAATTCTCCAATAAC TATGACAGTGGCTCTGCGAAGACAGAATCTGACTTGATATTTGTTCTTGATAGAATATTTGAAGGAGTATGTCGGCCATT TAAATTGAGAGTTGAACAAGTATTGCAGTCTCAACCAAGTCTTATAGTCTCCTACAAACTCAGTAATACACTTGAATTTT ACTGCTACACTGTGAGTTGTCATTTCTGTTATTTTTGTACTTACAGTAGAAATCCCATATGTATATAGATCTGTTTGACT TATTCTGGTCTTATAGATGTCAGATTTACTTGGGCGGGAAACTGCACTTTGTAATACACTATGGGCACTGAAAGATGCTG CTCAGAAAACATTTTTCGATATTTTGAAAGGTCGAGGAGAAAAGCTTTTACGATATCCCCCACTTGTTGCTGTTGATCTT TCCCCTCCATCTGCAGTGAGGGAAGGAGTATCTGTACTTCTTGAAATAATTGACAACTATAACAGCATGATGGTTCCTGC ATCTGGGCAAAAACCTGTTTTTGATCCAGTTATATCTGCTATACTGGATCCAATAATTCAGGTATGTTTCTCTATCTGGT TCCTGCATTTGATAGCACAGCTATTCTGTGTAATCGTGAAGTAAGTGATGTGAAATTATGAATTTGTTATTCTAAAATTT GACCTCCTTTTGTAGTATCATAAGGTTACTCACATACGGGTAGTCTTTGAAAATCTCTGCACTTAATCAATATGACCCAT TGAGATGCTGCAAATATCTGCATAGAACCACGGTCCTTGGTTTCCATCATATTGCTATTATTTGAAACTTAGGGAGTTTC TCGTGGTTCTTGTGGGGCTAAGACTGGTGTTTGATAATGTTATCACTGTTTAGTCTGCTCATTTCACTAAATTTATGTGT GTTTCCTTCTCCTGCAAATATTCTTGTTCTAAACATGTGATTACTTGAACTAGTTTGTGTATTATTCCTGGTTCTCCCTG ATGATTTAATAAATCATGCTTTGCATACTCCCATCTGTGAACTAGTTGGTTTAGTGCTATGCTCAAGGATAACGGGAACA TCCAATTTAAAGGCAGCTCAAAATTGTAAACTGATGGATGTTCATTTTTAAAAGACTATTGGCAGTAATTTTAATGAATT GTAGGATATCATAGCTTTAGCTTTGTATTTGTTGCAGATGTGTGAACGAGCAGCAGAGGCACACAAGTCAAAGGGAGCTG GCCACTCATCAAGGAGGAGTAGATCGAGTTCTGACTCTGGTCAACTAACTAGATCATCAGTTGATGCAATCTTGTCAAAT AGCAGTTCTACATCATCCTCACTGGTTCGTTCTTCCTCCTTTTTCTTATCTAAAGAATACTTGTTTTCCATGCTCTTTTG GGTTTACAGATATTTCTTGCTAGTTGAATTTTAGTTTTAGACCCCTTTTAATAAAATTCTGCTTTTCGTAGAACTTAAAT CCTGTGTGTTTTTATCAATTATTATGCCTATTTTATAACAAATGAAAATATTCCTGATGATCTGCAGTTATACATGCTTT TATTGTGCCCATGACGGTGCATGAGTCCAGCTTTACAACCTTTTAA
CDS sequence (LotjaGi2g1v0349900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACGACGGTGGCGGGTTTGGCGCCGGGGCTATCACGGAAGCTGAAGAAGGTTCTAGAATCGAGGATCGATACGCC GGATCTCTTGTCATCGCTCAACACGCTCTCTTCCTTCTACGATGACAACACTCCTCAGGCGCGCCGTAACCTCCGATCCA CCATCGAGAAGCGCGCTCTCTCCATCAACCATGAGTTCCTCGACGCTTCCCACGCCGTTCAACTGGCATTGGATAGCGTG GAGGACGAGGTCAATGCGCTTGCCGAGTGCTGCGATAGGATAGCAAAGTCTTTGAACAGTTGTAGTGCTAGCACCGGTGA CATTATCAGTACCACAGAAAGGCTCAAACAAGAGCTTGAAACTACTACACAAAGACAAGAGATTGTGGCATGTTTCCTGC GTGATTATCAGCTCTCCCCTGAAGAGATAAACGCACTTAGAGATGAAGAGCTGAATGAAAACTTTTTCAAAGCATTATCT CATGTCCAAGAGATTCATGCCAACTGCAAAGTGTTGCTTAGGACACATCATCAGCGTGCTGGTTTAGAGTTGATGGATAT GATGGCTGTGTATCAAGAAGGAGCTTATGAGCGTCTATGCAGGTGGGTTCAGGCCGAATGTAGAAGGCTGGGTGACACGG ACAATCCAGAAGTTAGTGAGCTTCTGAAAACAGCTGTACGCTACCTCAGGGAAAGATCTGTCCTTTTCAAGTATTGTGCA GAAGAGGTAGCCAATATGAGACACAATGCACTTTTTAGAAGGTTTATAAGTGCTCTTACACGTGGAGGCCCTGGTGGTTT GCCTCGACCAATTGAAGTGCATGCTCATGACCCATTGCGATATGTTGGTGATATGCTAGGCTGGTTGCATCAGGCCTTGG CATCCGAACGTGAACTTGTGCTTGTATTACTTGATCCAGATGCAAGTGTGGACACTGGACCGACAGCAAAGCAATTCTCC AATAACTATGACAGTGGCTCTGCGAAGACAGAATCTGACTTGATATTTGTTCTTGATAGAATATTTGAAGGAGTATGTCG GCCATTTAAATTGAGAGTTGAACAAGTATTGCAGTCTCAACCAAGTCTTATAGTCTCCTACAAACTCAGTAATACACTTG AATTTTACTGCTACACTATGTCAGATTTACTTGGGCGGGAAACTGCACTTTGTAATACACTATGGGCACTGAAAGATGCT GCTCAGAAAACATTTTTCGATATTTTGAAAGGTCGAGGAGAAAAGCTTTTACGATATCCCCCACTTGTTGCTGTTGATCT TTCCCCTCCATCTGCAGTGAGGGAAGGAGTATCTGTACTTCTTGAAATAATTGACAACTATAACAGCATGATGGTTCCTG CATCTGGGCAAAAACCTGTTTTTGATCCAGTTATATCTGCTATACTGGATCCAATAATTCAGATGTGTGAACGAGCAGCA GAGGCACACAAGTCAAAGGGAGCTGGCCACTCATCAAGGAGGAGTAGATCGAGTTCTGACTCTGGTCAACTAACTAGATC ATCAGTTGATGCAATCTTGTCAAATAGCAGTTCTACATCATCCTCACTGAATAAAATTCTGCTTTTCGTAGAACTTAAAT CCTGTGTGTTTTTATCAATTATTATGCCTATTTTATAA
Protein sequence (LotjaGi2g1v0349900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTTVAGLAPGLSRKLKKVLESRIDTPDLLSSLNTLSSFYDDNTPQARRNLRSTIEKRALSINHEFLDASHAVQLALDSV EDEVNALAECCDRIAKSLNSCSASTGDIISTTERLKQELETTTQRQEIVACFLRDYQLSPEEINALRDEELNENFFKALS HVQEIHANCKVLLRTHHQRAGLELMDMMAVYQEGAYERLCRWVQAECRRLGDTDNPEVSELLKTAVRYLRERSVLFKYCA EEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASERELVLVLLDPDASVDTGPTAKQFS NNYDSGSAKTESDLIFVLDRIFEGVCRPFKLRVEQVLQSQPSLIVSYKLSNTLEFYCYTMSDLLGRETALCNTLWALKDA AQKTFFDILKGRGEKLLRYPPLVAVDLSPPSAVREGVSVLLEIIDNYNSMMVPASGQKPVFDPVISAILDPIIQMCERAA EAHKSKGAGHSSRRSRSSSDSGQLTRSSVDAILSNSSSTSSSLNKILLFVELKSCVFLSIIMPIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 525 | 525 | - | – | |
PANTHER | 6 | 504 | 499 | 3.9E-200 | ||
SMART | 31 | 545 | 515 | 5.1E-163 | ||
Pfam | 33 | 487 | 455 | 9.8E-188 | ||
MobiDBLite | 484 | 503 | 20 | - | – | |
Phobius | 526 | 544 | 19 | - | – | |
Phobius | 545 | 545 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Intra-Golgi vesicle-mediated transport | The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). | ||
Cellular component | Golgi transport complex | A multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p). In mammals the subunits are named COG1-8. |
Expression pattern of LotjaGi2g1v0349900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…