Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0145500 |
Transcript ID | LotjaGi5g1v0145500.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cornichon family protein; TAIR: AT3G12180.1 Cornichon family protein; Swiss-Prot: sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1; TrEMBL-Plants: tr|I3TAE6|I3TAE6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0145500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:36942511..36949514) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTGGAATCTCTTCTTTTGGCTTGTAATTTGTTTCCCCTCCAATATTGCTCTTCTCGCTTCAACTTTCTACCAGGT TTCTTATTGCAATTTCTACATCTTATCCTTTTTATCTTGCTTTTTTTGCTGGCATTATTTCTACTAGGTTCAATAAATCA GTTAACTATTATTTATTTAAAAGTGTTGATGTTATTTTGTTTTTCCAATTTTGGGTTTCAGATTTTGATCCTGTCTGATT TGGAAGCTGACTATGTCAACCCATTTGATGCTTCATCTCGGATTAACTACTTCGTGCTTCCTGAGTTCATTGGGCAGGGA GTGTTATGTGCCCTTTGCCTCTTCACTGGCCACTGGGTCATGTTTTTGCTCACTGTTCCTGTTACTTGCTATCATGTCAT GCTGTAAGTCAAGTTCTTCTTCTGCCTGTTGTGTTTTATTTTTTTAAATCAAATGAAAGTGTGCAGTATGTTATGACTTA TGAGCATGATGTTGGATCTACTTCATTATTTTGAAGTGATGCTTTTGCCGTATATGCATATTAGATCTACTGAGATGTTG TATGGGTGGGTATTAATTGCTACTATAGTAGTTATGGGGAGTTATGCCTATAAGGAATGTGTGCTATAATAGGATGTGTT AGAATGAAAGAGTAGGGAGTGGTTATTTGCAAGTTCTGGATAGAAAACACTTTCTTTAGGAGTCACTTGACTCGGAGACA GCAACTTGGCTGTCTTCATGTGATATGTGTGATTTAGTGAAAGTAACCAACAAATTACGAATTAAATGTTCTACCATTTT GGTCTGACCTGCTGGATTTGAAATGAAGAGGTTTTGGGGCGAGTGAATTGGTCATTCCATCATGACCAGGGAGATTGAAT GCATGGATCTGTTAGAGGAAACAAATTGATGGACCGGAGGCCAGAATTGATGTTTGAATTAGCGTGAAAGAAAGGATGGG GGCATGGAGATTACCATGACTGAAAGGCTGTTAGCGGAGTGAGGAAGGTATTGGGCAAACATGTGGATTAGGAGGAGAAT GAAAGTTCAAATAGTAAATAGAGAGGTTCTTTTGGGAATGAGCTTGATTCTGACCATCATAACAATCTGGATGAATGTCA TATGATAGTCAAGAAGGTAAAATTTGCCGACCTTTAATGGAGAAGACCCAATAGGATGGATCACTGGTTCACAAGAGTAG AAACGTATTTTGAAGTGAAGAATATTTCATAGGAAGTTAAAATTAAATTGTCTAAACTTAAGTAAGCAAGGGTTCAACCA TTCACTGGTTCAACTTTTTAAGCGAAACAGAAGATGATCTAACTTGGGAGAAATTGAAGATGGAAATGGAGGCAAGGTCG GAGGCAGACAATATGAAAATCCTTACTAAGAATTAACAGAATTGAAGCAATTGGGAACAGTAGAGGAATATATTGAAGTA TTTGAATTCTCTCTCCACTTGTTAATAGGCTGCCTGAGGGACAATATTTGGTAGGTTTACTGCCAGAGATGAAGCACCAA TTCATACCTTGAGGCCTCAATCAAGTCATCAAGCCATGCAAATGACTAGAGGTATTGAAGCACAAAAAATTGCATTGTCT TGTGAAGATGGAAGTTACATATGGTGAACATGGAGTGGAGGACTCGAAAGTTTTGTAGGTGGGAATGGATCCTCTCATGT AACATGACTACATGAGAGATCTAAACCATCAAAAATGTTTTTTATTTTTATTTTTATTTTTTAATATATTTTAAATGGAT GAGATCTCTCTCATGTGGTCATGTCACATGAGAGGATCTATTCCCTTTGTAGGGTCTGCAAAAAGCAACTCAGGGGTGTG AGAATGGGTGAACAATTTTGTAGCCGCCTCAACCACTTCAAACAAAGACAATAACAGTTTGCGCAGTGGATGAAATCGAA CAGGAAACACAAAGCATGTTTCATCTTCTTTGTGGTTTCTAATTGGCGAAAATCAGAAAAAATGAGCTGACAGTCGGCAG AAAAATTAAGGGCATTTGTCTATTAGCTTATAAGGAACTAATGGAGAGAAAAAGTCAAGGTTTCTACTTTAAGAGTGGAG AAAAATTCTACCCATTGCATCAGTGCAGAGAAGCAATTAAAATTGATGATTTTGGTGGATGATGAAACACAAAATCCAGA GGTTAAAATAATTGCAATTGAAGTAGATGAAGAAAAGAGGAAGAGACTTTAGAATGCAATGTATTAGGAGTGTTTGGAGT TCCTAGTGGTGTCTTAACAGAAGTAAACAACGCACTGAAATGGAAGGTTGATTTAATGGAGTATAAATGGTGGTTCTAAT GGATAGTGGTGCGAGCTACAACTTCATTAATTCACATGTCTCTTCAGCCTTCAACCTTACGGTGGATAAAATTAAGACAT TGGGTGATGTGAGTAGACGCCAAAAGGATTTGTAAGGGTTTATTAATGAAATTAGGAGATATCAATGTTACGATGGATGC TTATTTGTCAGGTTTTGGGTTTTTTGATATCATACCTTGAATTGCATGTCTGGAACACTGAATCAGATAGTGAAATTGCA AGGAAAAGGAAGATTTAAGAGATAAAATAAGAAGTAGTATCTTCCGAATACTGAATGAGTAGTTTTAATAATCTTTTGGA GGGTTCATTAAGAGAAGTTAGGGGACTATTGTGGACAGTAAAGAGTGGGTCTGATGAACAAAAGAATACCCACCTAAATG TGAGCCAGCAGCGGGAGTTAGCTAAAGTGTTAGGAAATTTTCTGTGGTTTTCAAATAATTGGAAGGCCTGCCACCACAAA GAAATGTAACCTGGTGCAGTTCCCGTGAGTGCATGACTTTATAGGTACCCTCATCAATCATCATCACAAAATATAAGAGA GAAAGGCAAGGACAGGAAATGCTCCAGCAAGGTATAATTCTTCAAAGCTCTGTTGCATTTTGCAGTCTGCTGATTTTGGT TAAAAAAACAAGGAATCTTCATGGAAAATATATGTTGATTATAAAGCACTTCATAAAGTTACAGTACAAGATAAATATCT TATGCCTGAGGTAGATGAATTGATAAGCGAATTACATGGGGCTGCTCATTTTTCTAAATTAGGTCTTAATTCTGGCTACC ATTAGGTTCGGGTTAAGGTGGAAGATGTGCATAAAACAACTTTTCTAACCCATGAAAGACTTGATGAATTTTTGTTGATG CTTTCTGGGTTGACGAGTGCTCATGCAAGATTGCAACCTTCGAAGCAGTTATGAACAGACTTACAAGTCTCACTGGGGGG ATTTGGGCCAGTATTTTTTATGATGTGTTGGTTTATAGAGCAAAATGGGAGACTGATCTACAGAGTTTATCTCAGGTGTT GTTGGTGTCGCAAGTTAGTTTGTGGCGAATCAGAAAAAGTGCAGTTTCAGGCTGGAGCAAATTGAATATTTGGTGCATGT TATATCCGACAAAGGAGTGGCAATAGATCAAGCCAAAGTAAGAAGTGTTTTGGAATGCCCAACTAAAAATATTAAGGGAG TAAGGGGATGTTTACACTTAGCATGCAGTTCCCAAATAATAGCACCAGTCCTGAGTGTGCTCATCTCACTAAAAGTAAGT ACGGTGAGATTTGCTCTACCCCCTCTACCACGACAACTATCTTGTCCATGTCCTTGGTATCCACGACCAATCAAATTACT TAAAAAATGCAAAGGAATCAGTTGATGTCTATTTTCTGGTGAAGGGACTCGAATCAACCGATCTATGACTTCTTCCACTG TAGGAATGCTGGAAGTTGTCTAGGTCTGATGTTCCGGACCATTATGGAAGAATATTCGGCCAAAAATGGATTGGAATAAA CAAAATCGTGAAAAAACTGCCCCGATGTCATACAACTTAATCGACGAATTGGAACAACTGCTGTTTTCAGCTGCTGTCCC CCCCCCCCCCAAGGGCAGGTTCTGACGCATTACTCACCCGTCTGCCACTGGAAATACCACTTCCCGTCCCAAACATCCAT AGTCCATAAAGCCCATTAAGAATAAACACCATAAACACATTATCTACCTTGCCCTGCACCTTTTGAGGGTCACCACTAAC CAACACTAGTTTGCGCTCAACAATAGTGGAGTGAGCCTGATTCAAATAAGACTGAAGTCACGACTGGTCATCTGAAGGAT TGGGGGCCATCGAACAATCTCATTAAATCTTTGAGTATCATTATCATAAACACTTTGGGCCTGTCTCCAAACATGATGAC ATGTCTTGTATTGTATGGACGGACCATCAACTTGGAATAAATAGACTGCCATAATAACGGTAATAGTTGATTATTAGCTC ATTGCCATTCATTTGTCTCTCTCTTGTCGATGTTAGAGGACTTCTTGAAGAGATGATCAAAATGACATTGACCTAAAATC CATACCTCAAGATCATTATACCAATCCATGTAATTCTTTCTGTTCAACTTCTGGGTAGTGTTGGCAAATATGAGCTTGCA AAGGAAATCAAGCCCCTTTTTGAGGGCTGTCTAGGAGTCAACTTTGGGATTTTTTTGCCATGAGAACAGGTCAAACGTAC AAACCAAACTGAATATGTCTCAATCATGAGACCCACAGATCAAAAGTGGTCACACAAATGAGGAAGCTCTGCCGAATAGA ACTTGACTAGTGGCATGACAGATATACCACCAAAGGGTGGGTTGTGAGCCCCGTGTGTTAGTGAGCGTTCGTTAGAAAAT TGGAGCATGAGGGAATATAGAGGGGGGGGCTATGAGCCTATGACTTCGACGTATCGAGGAGAGACCAATTGGTGGTTTTG AGATAGCTGGTGGTGTTTCTTAGAGGCTCAGACACCCTACAAAGACAGAAAACTGGGTTAGCCCCTTACGGCGTCGGCTA AACACAACTAAGTACCTGAAAGATCTCATACCAACTTGAATTTGAAAGTATTTTGAATTGCTGATGATATGTTACATGGT TGTGTGATGTGCAGTATTTATATACAAGGTTTTGTAGTCAATCCCTAAAGTTTAGGAATTACGCTATCAACTAAGTAGGA AAACTTTGATAACGAGATTACTAAGGAAATATAATCCTAATCAATCATTGAACTATTCATAGAAATAGGGAAGCACTATA ATGACCAGGGTTTTAACTATCACTCTGAAACACAAATATCAACCGCAACAAAATAGTACCGCTGGTCAACAATATCGAAT GGAACAATATGACGGTGAATCGCACGTCACGACCGCAATAGAGCGGTGTTGCAGACGCCACAGACCTTGACCTAACACCG TTCAGCCGGTACCAGCGTTTGGTAAAATGAAATGAATGCACGTCGTGGTGTGGGGTCAAGTGGAATTGAGTTTCGAGGAG GGGGGGACATTTATTGGGTGGTTTGGAGGGTTTTATATGAACTTCTCTCAGAGTGTCTGTTTGAATAGTCATTGATTTAT AAATATTGATATTTGAGAAACTTAAGCATATATAAATTTTATTAAATATATTGGTAGTTACTAGTTTATTCATGTTTTTA ACATTTTGAATATAGTCATTTACTTTGAAAGTTGAATATTACACAATAATGAAAAAATATAGATTATTAGATTTTGCACA TTATATAAATTATTATAATAAAGTTTGTGCGAAATTGTGAATAAATCAACCGCTACCCACATCCCAGCACACACAATACC CGTAAAGATGAAAACTGTAATGTGCCCGCAATTTAGTACCATGGTAATAACATAAATCTAAACAGTGCGGACTCTGACTT GCTGGAAAAGTTACTGTAACAAATTTACTTGATCAACAATAGGTTATACTGGAAATTTTACTGCTAGCTATCACTTCCTG CCACATGAGCAGATTTATGTGGTCCTTTTAACAGGTTTTTATGCAAATTTTATTACATCGTAACTGGTGCAGTCATTGAA GTAGTAATTAGGAGCCTTTCTATGTTATTTTAGATATACTCATCTTCATTCTCATATATTTGTAATTCTTATTTTATAGA TTAAAGTAGAGAAAGGAAAGATATTTGCAAAATTTTAAAATTGAAAATGCAACTTGCTTCAAATATTATTCTCCTGAGCT TCACTGTAAATATAAAGCCATTGTAAACTGGTCATGGAAATAGAATGGAATGAAATGAATGCATGGTGCATACTATCAGT ATTAGAATTTTTCTAGAGATGAGGATTTATTCAAGTCTTCATAACAAACATTTTGGTCATATACCTAGTTGATGTGGGAT CTTTACGTCCTTCATGCTTAGGGTTGGGCATCTGGAATGAGAAGTTCACAATACTGGATATCTACGAGTGCCCCAATAAC AAATCTATAATATACTTAGACACCTTATTAGAATTTTTGGTCTACTCAAGTCCAAAAGCTAGCTCAAGGGGTGAGAGTTG TCCAAGTTTTTGAAAGAAACATACCTAGTCGGTGTCGGATCTTAACGATGACAAAGCTAGTTTCACGTTAACAAATCTTT CAACTTGTGTATCTAAGTTAATGGTGATTCGGCATGATATATATTCAGGAAAGCATATTGCAATGACGAGGAATTGAGTT GTTTCTAATAATTTAGTTGTCTGATGAATTTATGTTTGCACTTTGCACCTATCTTGTTTTGTACTTCCTTTTAGGATTTA TCTTATGAACTTGTATGCTCTTTTATCCTGATTATTCCTATCCAACGAATCAGGTATGTGAAAAGACAGCATCTTATTGA TGTTACTGAAGTGTTTAGAGTACTTAATGCTGAGAAGAGATTTCGGATAGCCAAACTTGTTTTGTACTTAACAGTCCTCA TCGTCACTATCTTCAGGTTCGTTGCACTCATAAAATAACCAATGCTTAACTGATGTGCCTTAGATTGTGCTTACTGCTTA TAATTGTGTCTGTTTCTTTTTCTAATTAAGGTCTTCCATTAGGCTTCTTGCTGCAGGAAGACTAAAATTATACAATTCGA GGTTTGAAGAATTAGACATTCGGGTGAATACTCTAGGATTCTAG
CDS sequence (LotjaGi5g1v0145500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGGAATCTCTTCTTTTGGCTTGTAATTTGTTTCCCCTCCAATATTGCTCTTCTCGCTTCAACTTTCTACCAGAT TTTGATCCTGTCTGATTTGGAAGCTGACTATGTCAACCCATTTGATGCTTCATCTCGGATTAACTACTTCGTGCTTCCTG AGTTCATTGGGCAGGGAGTGTTATGTGCCCTTTGCCTCTTCACTGGCCACTGGGTCATGTTTTTGCTCACTGTTCCTGTT ACTTGCTATCATGTCATGCTGTATGTGAAAAGACAGCATCTTATTGATGTTACTGAAGTGTTTAGAGTACTTAATGCTGA GAAGAGATTTCGGATAGCCAAACTTGTTTTGTACTTAACAGTCCTCATCGTCACTATCTTCAGGAAGACTAAAATTATAC AATTCGAGGTTTGA
Protein sequence (LotjaGi5g1v0145500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGWNLFFWLVICFPSNIALLASTFYQILILSDLEADYVNPFDASSRINYFVLPEFIGQGVLCALCLFTGHWVMFLLTVPV TCYHVMLYVKRQHLIDVTEVFRVLNAEKRFRIAKLVLYLTVLIVTIFRKTKIIQFEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 131 | 131 | 2.6E-53 | – | |
PANTHER | 1 | 131 | 131 | 2.6E-53 | – | |
Phobius | 1 | 4 | 4 | - | – | |
Phobius | 5 | 27 | 23 | - | – | |
SMART | 6 | 127 | 122 | 7.6E-53 | ||
Pfam | 7 | 127 | 121 | 1.5E-35 | ||
TMHMM | 7 | 29 | 23 | - | – | |
Phobius | 28 | 46 | 19 | - | – | |
Phobius | 47 | 66 | 20 | - | – | |
TMHMM | 67 | 89 | 23 | - | – | |
Phobius | 67 | 70 | 4 | - | – | |
Phobius | 71 | 89 | 19 | - | – | |
Phobius | 90 | 108 | 19 | - | – | |
Phobius | 109 | 127 | 19 | - | – | |
TMHMM | 110 | 127 | 18 | - | – | |
Phobius | 128 | 137 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi5g1v0145500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…