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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SIGNAL_PEPTIDE_C_REGION
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 10861 results. Now displaying 2 of 218 with 50 rows per page. This search has taken 14.686s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0013599.1
n.a. Expansin [Medicago truncatula] gi|357492247|ref|XP_003616412.1| chr0 5140797 5141387 +
1 domain prediction
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Lj0g3v0014429.1
n.a. xylobiose ABC transporter inner membrane subunit BxlG [Arthrobacter arilaitensis Re117] gi|308176001|ref|YP_003915407.1| chr0 5542949 5543610 -
1 domain prediction
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Lj0g3v0015209.1
n.a. RNA polymerase II large subunit [Coprinopsis cinerea okayama7]#130] gi|299755292|ref|XP_001828577.2| chr0 5880690 5881196 -
1 domain prediction
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Lj0g3v0015659.1
n.a. NAD(P)H dehydrogenase 18 [Theobroma cacao] gi|508713969|gb|EOY05866.1| chr0 6082845 6084145 -
1 domain prediction
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Lj0g3v0015969.1
n.a. PREDICTED: aldehyde dehydrogenase family 3 member H1-like isoform X2 [Cicer arietinum] gi|502135874|ref|XP_004502483.1| chr0 6224871 6225793 +
1 domain prediction
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Lj0g3v0016119.1
n.a. CTP synthase [Medicago truncatula] gi|357442321|ref|XP_003591438.1| chr0 6270564 6273281 +
1 domain prediction
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Lj0g3v0018789.1
n.a. PREDICTED: thioredoxin reductase 2-like [Glycine max] gi|356561017|ref|XP_003548782.1| chr0 7397213 7400094 +
1 domain prediction
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Lj0g3v0019189.1
n.a. PREDICTED: probable inactive receptor kinase RLK902-like [Cicer arietinum] gi|502163215|ref|XP_004512763.1| chr0 7588157 7590806 +
1 domain prediction
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Lj0g3v0019209.1
n.a. PREDICTED: probable inactive receptor kinase RLK902-like [Cicer arietinum] gi|502163215|ref|XP_004512763.1| chr0 7596646 7599369 -
1 domain prediction
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Lj0g3v0019219.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 7603327 7605574 +
1 domain prediction
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Lj0g3v0019219.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 7603327 7605574 +
1 domain prediction
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Lj0g3v0019309.1
n.a. PREDICTED: protein COBRA-like [Glycine max] gi|356568809|ref|XP_003552600.1| chr0 7656745 7660099 -
1 domain prediction
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Lj0g3v0019969.1
n.a. Glucan endo-1,3-beta-glucosidase [Medicago truncatula] gi|357462665|ref|XP_003601614.1| chr0 7960728 7962056 -
1 domain prediction
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Lj0g3v0020129.1
n.a. PREDICTED: geraniol 8-hydroxylase-like [Cicer arietinum] gi|502147285|ref|XP_004506725.1| chr0 8050972 8053404 +
1 domain prediction
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Lj0g3v0020169.1
n.a. PREDICTED: receptor-like protein 12-like [Cicer arietinum] gi|502147282|ref|XP_004506724.1| chr0 8075083 8078449 +
1 domain prediction
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Lj0g3v0020179.1
n.a. n.a. chr0 8075083 8089893 -
1 domain prediction
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Lj0g3v0020479.1
n.a. PREDICTED: peroxidase 4-like [Glycine max] gi|356500928|ref|XP_003519282.1| chr0 8241664 8249541 +
1 domain prediction
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Lj0g3v0020489.1
n.a. peroxidase 3 precursor [Phaseolus vulgaris] gi|5002344|gb|AAD37428.1|AF149278_1 chr0 8250471 8250789 +
1 domain prediction
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Lj0g3v0020499.1
n.a. peroxidase 3 precursor [Phaseolus vulgaris] gi|5002344|gb|AAD37428.1|AF149278_1 chr0 8250571 8250789 +
1 domain prediction
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Lj0g3v0020719.1
n.a. PREDICTED: expansin-A4-like [Glycine max] gi|356558059|ref|XP_003547326.1| chr0 8321037 8321548 +
1 domain prediction
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Lj0g3v0021199.1
n.a. PREDICTED: peptide transporter PTR5-like isoform X1 [Cicer arietinum] gi|502129218|ref|XP_004500227.1| chr0 8607133 8608166 +
1 domain prediction
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Lj0g3v0022029.1
n.a. Kinase-like protein [Medicago truncatula] gi|357491853|ref|XP_003616214.1| chr0 8901816 8902952 +
1 domain prediction
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Lj0g3v0022169.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508707114|gb|EOX99010.1| chr0 8961140 8966540 -
1 domain prediction
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Lj0g3v0022289.1
n.a. BNR repeat domain protein [Cystobacter fuscus] gi|488698037|ref|WP_002622066.1| chr0 8999232 8999789 +
1 domain prediction
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Lj0g3v0022299.1
n.a. unknown [Lotus japonicus] gi|388517349|gb|AFK46736.1| chr0 9003128 9003362 -
1 domain prediction
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Lj0g3v0022429.1
n.a. PREDICTED: probable phytol kinase 3, chloroplastic-like [Cicer arietinum] gi|502129411|ref|XP_004500293.1| chr0 9035565 9039016 +
1 domain prediction
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Lj0g3v0023049.1
n.a. stage V sporulation protein AF [Bacillus sp]. 2_A_57_CT2] gi|496691276|ref|WP_009332819.1| chr0 9244906 9245527 +
1 domain prediction
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Lj0g3v0023109.1
n.a. unknown [Lotus japonicus] gi|388519475|gb|AFK47799.1| chr0 9259309 9262529 +
1 domain prediction
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Lj0g3v0023289.1
n.a. n.a. chr0 9278013 9282869 -
1 domain prediction
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Lj0g3v0023299.1
n.a. Cytochrome P450 [Medicago truncatula] gi|357506961|ref|XP_003623769.1| chr0 9282816 9282988 -
1 domain prediction
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Lj0g3v0024109.2
n.a. TonB-denpendent receptor [Gallaecimonas xiamenensis] gi|495759764|ref|WP_008484343.1| chr0 9593467 9597014 -
1 domain prediction
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Lj0g3v0024609.1
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi|502154028|ref|XP_004509555.1| chr0 9801079 9818629 -
1 domain prediction
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Lj0g3v0024609.2
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi|502154028|ref|XP_004509555.1| chr0 9801079 9818629 -
1 domain prediction
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Lj0g3v0024829.1
n.a. envelope glycoprotein [Human immunodeficiency virus 1] gi|2250866|dbj|BAA21220.1| chr0 9894356 9894640 -
1 domain prediction
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Lj0g3v0024929.1
n.a. GJ13119 [Drosophila virilis] gi|195376147|ref|XP_002046858.1| chr0 9905812 9906894 +
1 domain prediction
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Lj0g3v0026839.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 3-like [Glycine max] gi|356537748|ref|XP_003537387.1| chr0 9953687 9953953 +
1 domain prediction
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Lj0g3v0027139.1
n.a. hypothetical protein CERSUDRAFT_61276 [Ceriporiopsis subvermispora B] gi|449538846|gb|EMD30328.1| chr0 9978387 9978531 -
1 domain prediction
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Lj0g3v0032139.1
n.a. PREDICTED: ser/Thr-rich protein T10 in DGCR region-like [Glycine max] gi|356552868|ref|XP_003544784.1| chr0 10123140 10125104 +
1 domain prediction
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Lj0g3v0032149.1
n.a. PREDICTED: probable beta-D-xylosidase 7-like [Cicer arietinum] gi|502166228|ref|XP_004513829.1| chr0 10126347 10126754 +
1 domain prediction
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Lj0g3v0033009.1
n.a. Os03g0748300 [Oryza sativa Japonica Group] gi|115455333|ref|NP_001051267.1| chr0 10434724 10437922 +
1 domain prediction
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Lj0g3v0033289.1
n.a. ABC transporter A family member [Medicago truncatula] gi|357477501|ref|XP_003609036.1| chr0 10534878 10536100 -
1 domain prediction
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Lj0g3v0033299.1
n.a. n.a. chr0 10534878 10536100 -
1 domain prediction
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Lj0g3v0034489.1
n.a. digalactosyldiacylglycerol synthase 1, chloroplastic [Glycine max] gi|351727022|ref|NP_001238170.1| chr0 10932087 10932261 -
1 domain prediction
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Lj0g3v0034649.1
n.a. n.a. chr0 11013917 11014797 +
1 domain prediction
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Lj0g3v0035039.1
n.a. xylobiose ABC transporter inner membrane subunit BxlG [Arthrobacter arilaitensis Re117] gi|308176001|ref|YP_003915407.1| chr0 11124423 11124998 -
1 domain prediction
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Lj0g3v0035439.1
n.a. PREDICTED: probable receptor-like protein kinase At1g11050-like [Cicer arietinum] gi|502124054|ref|XP_004498364.1| chr0 11295149 11297703 -
1 domain prediction
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Lj0g3v0036279.1
n.a. n.a. chr0 11609815 11610358 +
1 domain prediction
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Lj0g3v0036359.2
n.a. n.a. chr0 11632343 11634226 -
1 domain prediction
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Lj0g3v0036529.1
n.a. Auxin-induced in root cultures protein [Medicago truncatula] gi|357513203|ref|XP_003626890.1| chr0 11652778 11653327 -
1 domain prediction
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Lj0g3v0036559.1
n.a. conserved hypothetical protein [Ricinus communis] gi|255553869|ref|XP_002517975.1| chr0 11669140 11670925 -
1 domain prediction
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