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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SignalP-TM_GRAM_POSITIVE
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 2537 results. Now displaying 3 of 51 with 50 rows per page. This search has taken 14.528s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0064449.2
n.a. Nucleotide-diphospho-sugar transferase family protein [Theobroma cacao] gi|508709315|gb|EOY01212.1| chr0 22229848 22234703 +
1 domain prediction
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Lj0g3v0064719.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782128|gb|EOY29384.1| chr0 22412993 22414399 -
1 domain prediction
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Lj0g3v0064829.1
n.a. Uncharacterized protein TCM_041604 [Theobroma cacao] gi|508786446|gb|EOY33702.1| chr0 22476504 22478114 +
1 domain prediction
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Lj0g3v0065389.1
n.a. Seed specific protein Bn15D18B [Medicago truncatula] gi|357474035|ref|XP_003607302.1| chr0 22714753 22715165 -
1 domain prediction
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Lj0g3v0065739.1
n.a. copper-binding family protein [Arabidopsis lyrata subsp]. lyrata] gi|297822593|ref|XP_002879179.1| chr0 22916132 22917384 +
1 domain prediction
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Lj0g3v0065739.2
n.a. copper-binding family protein [Arabidopsis lyrata subsp]. lyrata] gi|297822593|ref|XP_002879179.1| chr0 22916132 22918071 +
1 domain prediction
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Lj0g3v0066289.2
n.a. Os05g0137600 [Oryza sativa Japonica Group] gi|115461975|ref|NP_001054587.1| chr0 23278685 23279715 +
1 domain prediction
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Lj0g3v0066309.1
n.a. Uncharacterized protein TCM_021515 [Theobroma cacao] gi|508715057|gb|EOY06954.1| chr0 23286608 23287460 +
1 domain prediction
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Lj0g3v0066349.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Cicer arietinum] gi|502134366|ref|XP_004502093.1| chr0 23322310 23323491 +
1 domain prediction
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Lj0g3v0067359.1
n.a. PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] gi|356521735|ref|XP_003529507.1| chr0 23894504 23898568 -
1 domain prediction
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Lj0g3v0067399.1
n.a. PREDICTED: trans-2,3-enoyl-CoA reductase-like [Glycine max] gi|356499538|ref|XP_003518596.1| chr0 23924101 23926933 +
1 domain prediction
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Lj0g3v0067409.1
n.a. PREDICTED: trans-2,3-enoyl-CoA reductase-like [Glycine max] gi|356499538|ref|XP_003518596.1| chr0 23927270 23930948 +
1 domain prediction
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Lj0g3v0067619.1
n.a. PREDICTED: probable WRKY transcription factor 72-like [Glycine max] gi|356513544|ref|XP_003525473.1| chr0 24054609 24055275 +
1 domain prediction
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Lj0g3v0067719.1
n.a. Os03g0267100 [Oryza sativa Japonica Group] gi|115452125|ref|NP_001049663.1| chr0 24086042 24087173 -
1 domain prediction
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Lj0g3v0067899.1
n.a. Beta-glucan-binding protein [Medicago truncatula] gi|358346201|ref|XP_003637159.1| chr0 24191317 24194054 +
1 domain prediction
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Lj0g3v0069069.1
n.a. CCP [Medicago truncatula] gi|357492809|ref|XP_003616693.1| chr0 24827592 24836109 -
1 domain prediction
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Lj0g3v0069349.1
n.a. PREDICTED: wall-associated receptor kinase-like 8-like [Glycine max] gi|356532447|ref|XP_003534784.1| chr0 25034120 25036247 +
1 domain prediction
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Lj0g3v0069819.1
n.a. PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum] gi|502137087|ref|XP_004502963.1| chr0 25357709 25359414 -
1 domain prediction
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Lj0g3v0070479.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 9-like [Cicer arietinum] gi|502129446|ref|XP_004500308.1| chr0 25683767 25688056 -
1 domain prediction
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Lj0g3v0070749.1
n.a. 21 kDa protein [Medicago truncatula] gi|357455903|ref|XP_003598232.1| chr0 25878873 25880028 +
1 domain prediction
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Lj0g3v0071959.1
n.a. nitrite reductase [NAD](P)H] gi|71277901|ref|YP_271586.1| chr0 26533330 26533770 -
1 domain prediction
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Lj0g3v0073229.1
n.a. Ring 1b [Theobroma cacao] gi|508707572|gb|EOX99468.1| chr0 27417683 27425098 -
1 domain prediction
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Lj0g3v0073749.1
n.a. S-adenosyl-L-methionine-dependent methyltransferase mraW [Theobroma cacao] gi|508705107|gb|EOX97003.1| chr0 27728463 27729796 +
1 domain prediction
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Lj0g3v0076019.1
n.a. Mannan endo-1,4-beta-mannosidase [Medicago truncatula] gi|357483557|ref|XP_003612065.1| chr0 28937468 28950475 +
1 domain prediction
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Lj0g3v0076189.1
n.a. PREDICTED: methyltransferase-like protein 7A-like [Glycine max] gi|356499831|ref|XP_003518740.1| chr0 28992124 28995301 +
1 domain prediction
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Lj0g3v0076219.1
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr0 29019768 29021636 +
1 domain prediction
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Lj0g3v0076219.2
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr0 29019768 29021636 +
1 domain prediction
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Lj0g3v0076249.2
n.a. PREDICTED: peroxidase 11-like [Cicer arietinum] gi|502094865|ref|XP_004490316.1| chr0 29028650 29031646 -
1 domain prediction
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Lj0g3v0077119.1
n.a. PREDICTED: aspartic proteinase-like [Glycine max] gi|356555682|ref|XP_003546159.1| chr0 29506857 29510333 -
1 domain prediction
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Lj0g3v0077669.1
n.a. Spastin [Medicago truncatula] gi|357463629|ref|XP_003602096.1| chr0 29803110 29807382 -
1 domain prediction
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Lj0g3v0077669.2
n.a. Spastin [Medicago truncatula] gi|357463629|ref|XP_003602096.1| chr0 29803110 29807382 -
1 domain prediction
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Lj0g3v0078099.1
n.a. n.a. chr0 30045375 30045529 -
1 domain prediction
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Lj0g3v0078109.1
n.a. n.a. chr0 30045375 30045529 -
1 domain prediction
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Lj0g3v0078459.1
n.a. PREDICTED: protein notum homolog [Glycine max] gi|356498576|ref|XP_003518126.1| chr0 30199276 30202365 +
1 domain prediction
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Lj0g3v0078649.1
n.a. PREDICTED: monocopper oxidase-like protein SKU5-like [Glycine max] gi|356563298|ref|XP_003549901.1| chr0 30301033 30305727 +
1 domain prediction
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Lj0g3v0078779.1
n.a. n.a. chr0 30354196 30356396 +
1 domain prediction
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Lj0g3v0078909.1
n.a. Auxin-induced in root cultures protein [Medicago truncatula] gi|357513203|ref|XP_003626890.1| chr0 30427914 30428463 -
1 domain prediction
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Lj0g3v0079179.1
n.a. Trichome birefringence-like 39 [Theobroma cacao] gi|508702319|gb|EOX94215.1| chr0 30605765 30610415 +
1 domain prediction
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Lj0g3v0079529.1
n.a. PREDICTED: desiccation-related protein PCC13-62-like [Glycine max] gi|356529093|ref|XP_003533131.1| chr0 30758474 30760325 -
1 domain prediction
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Lj0g3v0079759.1
n.a. alpha/beta hydrolase [Aspergillus kawachii IFO 4308] gi|358368638|dbj|GAA85254.1| chr0 30814917 30815297 -
1 domain prediction
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Lj0g3v0080529.1
n.a. Cu/Zn-superoxide dismutase copper chaperone [Glycine max] gi|351722110|ref|NP_001235441.1| chr0 31227500 31233353 +
1 domain prediction
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Lj0g3v0081019.1
n.a. hypothetical protein MTR_137s0036 [Medicago truncatula] gi|358349125|ref|XP_003638590.1| chr0 31548877 31549540 +
1 domain prediction
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Lj0g3v0081719.1
n.a. beta-glucosidase D7 [Lotus japonicus] gi|188573187|gb|ACD65511.1| chr0 31995212 32000998 +
1 domain prediction
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Lj0g3v0081999.1
n.a. PREDICTED: serine carboxypeptidase II-2-like [Cicer arietinum] gi|502087679|ref|XP_004488608.1| chr0 32139323 32144003 -
1 domain prediction
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Lj0g3v0081999.2
n.a. PREDICTED: serine carboxypeptidase II-2-like [Cicer arietinum] gi|502087679|ref|XP_004488608.1| chr0 32139916 32144003 -
1 domain prediction
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Lj0g3v0082119.1
n.a. PREDICTED: pectinesterase QRT1-like [Cicer arietinum] gi|502099523|ref|XP_004491500.1| chr0 32195437 32197099 +
1 domain prediction
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Lj0g3v0083059.1
n.a. Ser/Thr protein kinase [Lotus japonicus] gi|62857012|dbj|BAD95891.1| chr0 32749920 32755086 -
1 domain prediction
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Lj0g3v0083289.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 32893415 32902115 +
1 domain prediction
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Lj0g3v0083289.2
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 32893415 32896729 +
1 domain prediction
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Lj0g3v0083479.1
n.a. Os02g0168300 [Oryza sativa Japonica Group] gi|115444465|ref|NP_001046012.1| chr0 33079336 33082923 +
1 domain prediction
 –