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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SignalP-noTM_GRAM_NEGATIVE
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 885 results. Now displaying 4 of 18 with 50 rows per page. This search has taken 14.795s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0247749.1
n.a. PREDICTED: PAN domain-containing protein At5g03700-like [Cicer arietinum] gi|502111715|ref|XP_004494144.1| chr0 128435286 128437794 +
1 domain prediction
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Lj0g3v0248339.1
n.a. PREDICTED: organ-specific protein P4-like [Cicer arietinum] gi|502149167|ref|XP_004507418.1| chr0 128730864 128731521 +
1 domain prediction
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Lj0g3v0250199.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 29-like [Glycine max] gi|356574368|ref|XP_003555320.1| chr0 129693879 129697385 +
1 domain prediction
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Lj0g3v0250439.1
n.a. PREDICTED: disease resistance response protein 206-like [Cicer arietinum] gi|502167803|ref|XP_004514253.1| chr0 129801987 129803111 +
1 domain prediction
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Lj0g3v0250929.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357484225|ref|XP_003612400.1| chr0 130090343 130091597 +
1 domain prediction
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Lj0g3v0254249.1
n.a. RecName: Full=Non-specific lipid-transfer protein 2; Short=LTP2; Contains: RecName: Full=Non-specific lipid-transfer protein 7; Short=LTP7; Flags: Precursorgi|60735410|gb|AAX35807.1| lipid transfer protein 2 precursor [Lens culinaris] gi|122249721|sp|A0AT29.1|NLTP2_LENCU chr0 132022905 132023539 -
1 domain prediction
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Lj0g3v0254709.1
n.a. PREDICTED: blue copper protein-like [Glycine max] gi|356576407|ref|XP_003556323.1| chr0 132276218 132277591 +
1 domain prediction
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Lj0g3v0255029.1
n.a. n.a. chr0 132429977 132431577 +
1 domain prediction
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Lj0g3v0255029.2
n.a. n.a. chr0 132430267 132430749 +
1 domain prediction
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Lj0g3v0255029.3
n.a. n.a. chr0 132430267 132431577 +
1 domain prediction
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Lj0g3v0255239.1
n.a. PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356549691|ref|XP_003543225.1| chr0 132553697 132558615 -
1 domain prediction
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Lj0g3v0256619.1
n.a. Non-specific lipid-transfer protein [Medicago truncatula] gi|357451153|ref|XP_003595853.1| chr0 133223093 133224275 +
1 domain prediction
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Lj0g3v0256929.1
n.a. expressed protein [Oryza sativa Japonica Group] gi|78707843|gb|ABB46818.1| chr0 133384728 133385446 +
1 domain prediction
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Lj0g3v0257449.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Cicer arietinum] gi|502124903|ref|XP_004498719.1| chr0 133648660 133651802 -
1 domain prediction
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Lj0g3v0258019.1
n.a. n.a. chr0 133941702 133943794 +
1 domain prediction
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Lj0g3v0259709.1
n.a. Proline rich protein [Medicago truncatula] gi|357476913|ref|XP_003608742.1| chr0 134978142 134979336 -
1 domain prediction
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Lj0g3v0260229.1
n.a. Disease resistance-responsive (dirigent-like protein) family protein [Theobroma cacao] gi|508713525|gb|EOY05422.1| chr0 135211809 135213394 -
1 domain prediction
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Lj0g3v0260239.1
n.a. Disease resistance-responsive (dirigent-like protein) family protein [Theobroma cacao] gi|508713525|gb|EOY05422.1| chr0 135211894 135215572 -
1 domain prediction
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Lj0g3v0260249.1
n.a. Disease resistance-responsive (dirigent-like protein) family protein [Theobroma cacao] gi|508713525|gb|EOY05422.1| chr0 135214433 135215572 -
1 domain prediction
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Lj0g3v0264299.1
n.a. PREDICTED: GTP-binding protein ERG-like [Cicer arietinum] gi|502166492|ref|XP_004513909.1| chr0 137008616 137013565 -
1 domain prediction
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Lj0g3v0264469.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like [Cicer arietinum] gi|502124351|ref|XP_004498489.1| chr0 137093886 137096143 +
1 domain prediction
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Lj0g3v0265359.1
n.a. PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cicer arietinum] gi|502181574|ref|XP_004516837.1| chr0 137488332 137489725 -
1 domain prediction
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Lj0g3v0266779.1
n.a. Mitogen-activated protein kinase HOG1 [Medicago truncatula] gi|357513567|ref|XP_003627072.1| chr0 138227354 138230676 +
1 domain prediction
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Lj0g3v0270749.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Cicer arietinum] gi|502127325|ref|XP_004499656.1| chr0 140226508 140228997 -
1 domain prediction
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Lj0g3v0270959.1
n.a. Non-specific lipid-transfer protein [Medicago truncatula] gi|357462977|ref|XP_003601770.1| chr0 140347164 140349246 -
1 domain prediction
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Lj0g3v0271049.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357462393|ref|XP_003601478.1| chr0 140382825 140387367 +
1 domain prediction
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Lj0g3v0271059.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357462393|ref|XP_003601478.1| chr0 140382825 140387369 +
1 domain prediction
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Lj0g3v0272539.2
n.a. TLC ATP/ADP transporter [Theobroma cacao] gi|508728168|gb|EOY20065.1| chr0 141226759 141233165 -
1 domain prediction
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Lj0g3v0275219.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera] gi|359490131|ref|XP_002279967.2| chr0 142753684 142755758 +
1 domain prediction
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Lj0g3v0275409.1
n.a. n.a. chr0 142838478 142845948 +
1 domain prediction
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Lj0g3v0275679.1
n.a. Uncharacterized protein TCM_002254 [Theobroma cacao] gi|508701499|gb|EOX93395.1| chr0 143021269 143022417 +
1 domain prediction
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Lj0g3v0277419.1
n.a. PREDICTED: classical arabinogalactan protein 11-like [Cicer arietinum] gi|502126965|ref|XP_004499510.1| chr0 143972097 143973119 -
1 domain prediction
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Lj0g3v0278429.1
n.a. n.a. chr0 144567819 144568190 -
1 domain prediction
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Lj0g3v0278599.2
n.a. Uncharacterized protein TCM_014932 [Theobroma cacao] gi|508775642|gb|EOY22898.1| chr0 144635588 144636485 -
1 domain prediction
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Lj0g3v0278899.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic-like [Glycine max] gi|356569143|ref|XP_003552765.1| chr0 144757133 144760182 +
1 domain prediction
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Lj0g3v0279189.1
n.a. Uncharacterized protein TCM_017498 [Theobroma cacao] gi|508711176|gb|EOY03073.1| chr0 144862643 144864315 +
1 domain prediction
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Lj0g3v0279199.1
n.a. n.a. chr0 144862744 144863190 -
1 domain prediction
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Lj0g3v0280349.1
n.a. Kinase-like protein [Medicago truncatula] gi|357497897|ref|XP_003619237.1| chr0 145398995 145400678 -
1 domain prediction
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Lj0g3v0280349.2
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like isoform X1 [Cicer arietinum] gi|502124182|ref|XP_004498420.1| chr0 145398995 145400678 -
1 domain prediction
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Lj0g3v0282749.3
n.a. PREDICTED: aspartic proteinase oryzasin-1-like [Cicer arietinum] gi|502150663|ref|XP_004508063.1| chr0 146577804 146583673 -
1 domain prediction
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Lj0g3v0284719.1
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356565125|ref|XP_003550795.1| chr0 147741036 147743080 +
1 domain prediction
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Lj0g3v0285709.1
n.a. PREDICTED: laccase-5-like [Glycine max] gi|356540011|ref|XP_003538485.1| chr0 148334877 148339191 -
1 domain prediction
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Lj0g3v0286929.2
n.a. PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449433501|ref|XP_004134536.1| chr0 149148518 149149395 -
1 domain prediction
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Lj0g3v0287399.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508705964|gb|EOX97860.1| chr0 149335594 149338162 +
1 domain prediction
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Lj0g3v0287639.1
n.a. cysteine proteinase precursor [Glycine max] gi|351721126|ref|NP_001237199.1| chr0 149461775 149465973 +
1 domain prediction
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Lj0g3v0289849.2
n.a. cell wall protein [Nicotiana tabacum] gi|6723687|emb|CAB67122.1| chr0 150497203 150498368 +
1 domain prediction
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Lj0g3v0290889.1
n.a. PREDICTED: wall-associated receptor kinase 2-like [Glycine max] gi|356554681|ref|XP_003545672.1| chr0 150991874 150995211 +
1 domain prediction
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Lj0g3v0291629.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Glycine max] gi|356573811|ref|XP_003555049.1| chr0 151322489 151325256 -
1 domain prediction
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Lj0g3v0292609.1
n.a. PREDICTED: olee1-like protein-like [Cicer arietinum] gi|502078272|ref|XP_004485892.1| chr0 151881472 151883234 +
1 domain prediction
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Lj0g3v0293859.1
n.a. n.a. chr0 152602577 152604080 -
1 domain prediction
 –