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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00514
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 183 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.052s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0072459.1
n.a. Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1| chr0 26881203 26882884 -
2 domain predictions
1 GO term
Lj0g3v0076489.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr0 29166796 29174490 +
2 domain predictions
1 GO term
Lj0g3v0076649.1
n.a. PREDICTED: vacuolar protein 8-like [Glycine max] gi|356532060|ref|XP_003534592.1| chr0 29291299 29293291 +
2 domain predictions
1 GO term
Lj0g3v0179259.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Glycine max] gi|356532089|ref|XP_003534606.1| chr0 87006597 87011369 +
2 domain predictions
1 GO term
Lj0g3v0180319.1
n.a. PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max] gi|356521809|ref|XP_003529543.1| chr0 87722407 87723520 -
2 domain predictions
1 GO term
Lj0g3v0188449.2
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502129552|ref|XP_004500342.1| chr0 92100909 92112078 -
2 domain predictions
1 GO term
Lj0g3v0200239.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357514475|ref|XP_003627526.1| chr0 98752758 98760421 -
2 domain predictions
1 GO term
Lj0g3v0230519.1
n.a. Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1| chr0 119415477 119418526 +
2 domain predictions
1 GO term
Lj0g3v0235399.1
n.a. Armadillo/beta-catenin-like repeat, C2 calcium/lipid-binding domain (CaLB) protein isoform 1 [Theobroma cacao] gi|508724457|gb|EOY16354.1| chr0 121975395 121986177 +
2 domain predictions
1 GO term
Lj0g3v0248689.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Cicer arietinum] gi|502090026|ref|XP_004489097.1| chr0 128895576 128896850 -
2 domain predictions
1 GO term
Lj0g3v0248789.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Glycine max] gi|356568604|ref|XP_003552500.1| chr0 128931432 128934505 +
2 domain predictions
1 GO term
Lj0g3v0252669.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 131072397 131073677 -
2 domain predictions
1 GO term
Lj0g3v0274039.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357438777|ref|XP_003589665.1| chr0 142049615 142057959 -
2 domain predictions
1 GO term
Lj0g3v0274039.2
n.a. U-box domain-containing protein [Medicago truncatula] gi|357438777|ref|XP_003589665.1| chr0 142049615 142055794 -
2 domain predictions
1 GO term
Lj0g3v0274989.1
n.a. Importin subunit alpha-2 [Medicago truncatula] gi|357475937|ref|XP_003608254.1| chr0 142631409 142633639 -
2 domain predictions
1 GO term
Lj0g3v0286609.1
n.a. PREDICTED: vacuolar protein 8-like [Glycine max] gi|356522654|ref|XP_003529961.1| chr0 148895010 148897537 -
2 domain predictions
1 GO term
Lj0g3v0343689.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180194569 180204934 -
2 domain predictions
1 GO term
Lj0g3v0343689.2
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180197934 180204934 -
2 domain predictions
1 GO term
Lj0g3v0343689.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180200209 180204251 -
2 domain predictions
1 GO term
Lj0g3v0363829.3
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508725730|gb|EOY17627.1| chr0 191979785 191983250 +
2 domain predictions
1 GO term
Lj1g3v0053660.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628227 -
2 domain predictions
1 GO term
Lj1g3v0053660.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628268 -
2 domain predictions
1 GO term
Lj1g3v0415480.1
n.a. PREDICTED: U-box domain-containing protein 38-like [Cicer arietinum] gi|502133980|ref|XP_004501958.1| chr1 5320888 5323441 -
2 domain predictions
1 GO term
Lj1g3v0449060.1
n.a. n.a. chr1 6015729 6018980 -
2 domain predictions
1 GO term
Lj1g3v1008930.1
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356518651|ref|XP_003527992.1| chr1 12869719 12875003 -
2 domain predictions
1 GO term
Lj1g3v2739210.1
n.a. PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1| chr1 31474305 31478297 +
2 domain predictions
1 GO term
Lj1g3v2741270.1
n.a. PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1| chr1 31514990 31518305 +
2 domain predictions
1 GO term
Lj1g3v3459850.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr1 40194576 40202272 +
2 domain predictions
1 GO term
Lj1g3v4433200.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr1 51667606 51672748 -
2 domain predictions
1 GO term
Lj1g3v4515400.1
n.a. PREDICTED: U-box domain-containing protein 3-like [Glycine max] gi|356572260|ref|XP_003554287.1| chr1 52872716 52877549 +
2 domain predictions
1 GO term
Lj1g3v5020920.1
n.a. PREDICTED: U-box domain-containing protein 9-like [Cicer arietinum] gi|502113800|ref|XP_004494763.1| chr1 61173643 61175993 +
2 domain predictions
1 GO term
Lj2g3v0922620.1
n.a. PREDICTED: U-box domain-containing protein 3-like [Cicer arietinum] gi|502090462|ref|XP_004489236.1| chr2 14724074 14725652 -
2 domain predictions
1 GO term
Lj2g3v1020040.1
n.a. PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1| chr2 15918016 15920723 -
2 domain predictions
1 GO term
Lj2g3v1391600.1
n.a. PREDICTED: U-box domain-containing protein 19-like [Cicer arietinum] gi|502093005|ref|XP_004489855.1| chr2 22066031 22068403 +
2 domain predictions
1 GO term
Lj2g3v1415490.1
n.a. Armadillo repeat only 4 [Theobroma cacao] gi|508708711|gb|EOY00608.1| chr2 22480142 22482817 -
2 domain predictions
1 GO term
Lj2g3v2002780.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 3-like [Cicer arietinum] gi|502160109|ref|XP_004511636.1| chr2 30461113 30470358 -
2 domain predictions
1 GO term
Lj2g3v2209750.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356553040|ref|XP_003544866.1| chr2 32896520 32901452 +
2 domain predictions
1 GO term
Lj2g3v2412460.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356499010|ref|XP_003518337.1| chr2 34236718 34242135 -
2 domain predictions
1 GO term
Lj2g3v2794440.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Glycine max] gi|356499213|ref|XP_003518436.1| chr2 36759411 36762100 +
2 domain predictions
1 GO term
Lj2g3v3336120.1
n.a. PREDICTED: armadillo repeat-containing protein 8-like isoform X1 [Cicer arietinum] gi|502099759|ref|XP_004491554.1| chr2 42243670 42251694 -
2 domain predictions
1 GO term
Lj3g3v1421800.1
n.a. PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum] gi|502146392|ref|XP_004506434.1| chr3 18405235 18407914 +
2 domain predictions
1 GO term
Lj3g3v1421810.1
n.a. PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum] gi|502146392|ref|XP_004506434.1| chr3 18405235 18407914 +
2 domain predictions
1 GO term
Lj3g3v1907650.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502158133|ref|XP_004511041.1| chr3 24556222 24558094 -
2 domain predictions
1 GO term
Lj3g3v3189720.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502145080|ref|XP_004505870.1| chr3 39447089 39448669 -
2 domain predictions
1 GO term
Lj3g3v3189730.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Glycine max] gi|356539016|ref|XP_003537996.1| chr3 39447514 39452228 -
2 domain predictions
1 GO term
Lj3g3v3374660.1
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356541541|ref|XP_003539233.1| chr3 41472136 41476293 +
2 domain predictions
1 GO term
Lj3g3v3374660.2
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356541541|ref|XP_003539233.1| chr3 41472136 41476293 +
2 domain predictions
1 GO term
Lj3g3v3374660.3
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356541541|ref|XP_003539233.1| chr3 41472136 41476293 +
2 domain predictions
1 GO term
Lj3g3v3486850.1
n.a. PREDICTED: probable disease resistance RPP8-like protein 2-like [Cicer arietinum] gi|502144957|ref|XP_004505810.1| chr3 42459311 42460134 -
2 domain predictions
1 GO term
Lj4g3v0153910.1
n.a. PREDICTED: abnormal spindle-like microcephaly-associated protein homolog isoform X3 [Cicer arietinum] gi|502149885|ref|XP_004507699.1| chr4 1808643 1817730 -
2 domain predictions
1 GO term