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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00365
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 100 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.053s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v0281040.1
LjFls2 flagellin-sensing 2-like protein [Lotus japonicus] gi|355346200|gb|AER60531.1| chr4 3284600 3289068 +
1 domain prediction
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Lj0g3v0100639.1
n.a. n.a. chr0 42535737 42541606 -
1 domain prediction
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Lj0g3v0100639.2
n.a. n.a. chr0 42535737 42541606 -
1 domain prediction
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Lj0g3v0196459.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357501759|ref|XP_003621168.1| chr0 95786710 95787511 -
1 domain prediction
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Lj0g3v0203199.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357439013|ref|XP_003589783.1| chr0 100705047 100707368 +
1 domain prediction
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Lj0g3v0205729.1
n.a. Leucine-rich repeat-containing protein [Medicago truncatula] gi|357489671|ref|XP_003615123.1| chr0 102342302 102346014 -
1 domain prediction
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Lj0g3v0207049.1
n.a. Leucine-rich repeat-containing protein [Medicago truncatula] gi|357489671|ref|XP_003615123.1| chr0 103324473 103327843 +
1 domain prediction
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Lj0g3v0247179.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum] gi|502148812|ref|XP_004507279.1| chr0 128097658 128101088 -
1 domain prediction
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Lj0g3v0278349.1
n.a. probable leucine-rich repeat receptor-like protein kinase At1g35710-like precursor [Glycine max] gi|359807163|ref|NP_001241099.1| chr0 144542642 144544812 -
1 domain prediction
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Lj0g3v0303549.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357516993|ref|XP_003628785.1| chr0 158016672 158020224 -
1 domain prediction
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Lj0g3v0331049.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum] gi|502148812|ref|XP_004507279.1| chr0 173005144 173009117 -
1 domain prediction
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Lj0g3v0336229.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Glycine max] gi|356506579|ref|XP_003522057.1| chr0 176102747 176107250 -
1 domain prediction
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Lj0g3v0359279.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561446|ref|XP_003548992.1| chr0 189146158 189148127 -
1 domain prediction
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Lj1g3v0112960.1
n.a. Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao] gi|508713910|gb|EOY05807.1| chr1 1212000 1218600 +
1 domain prediction
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Lj1g3v1060470.1
n.a. Kinase-like protein [Medicago truncatula] gi|357464125|ref|XP_003602344.1| chr1 13106600 13110033 +
1 domain prediction
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Lj1g3v2910560.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like isoform X1 [Cicer arietinum] gi|502106329|ref|XP_004492917.1| chr1 32782596 32784388 -
1 domain prediction
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Lj1g3v4515870.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Solanum lycopersicum] gi|460404056|ref|XP_004247501.1| chr1 53126599 53130958 -
1 domain prediction
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Lj1g3v5061080.1
n.a. PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] gi|356504209|ref|XP_003520891.1| chr1 62029906 62032098 +
1 domain prediction
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Lj2g3v0636420.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr2 10122703 10126263 -
1 domain prediction
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Lj2g3v0661330.1
n.a. leucine-rich repeat family protein [Arabidopsis lyrata subsp]. lyrata] gi|297847122|ref|XP_002891442.1| chr2 10630698 10642667 -
1 domain prediction
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Lj2g3v1241150.1
n.a. PREDICTED: receptor-like protein kinase 2-like [Glycine max] gi|356502639|ref|XP_003520125.1| chr2 19650481 19655160 -
1 domain prediction
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Lj2g3v1350520.1
n.a. probable leucine-rich repeat receptor-like protein kinase At1g35710-like precursor [Glycine max] gi|359807163|ref|NP_001241099.1| chr2 21293084 21296216 +
1 domain prediction
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Lj2g3v1550360.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum] gi|502162249|ref|XP_004512441.1| chr2 24680573 24684084 -
1 domain prediction
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Lj2g3v1550370.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum] gi|502162249|ref|XP_004512441.1| chr2 24680573 24684084 -
1 domain prediction
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Lj2g3v1588550.1
n.a. PREDICTED: leucine-rich repeat protein SHOC-2-like [Glycine max] gi|356538413|ref|XP_003537698.1| chr2 25230930 25234028 +
1 domain prediction
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Lj2g3v1707560.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cicer arietinum] gi|502161315|ref|XP_004512119.1| chr2 26400868 26405408 -
1 domain prediction
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Lj2g3v1984370.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1-like [Cicer arietinum] gi|502160581|ref|XP_004511796.1| chr2 29015057 29019497 -
1 domain prediction
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Lj2g3v1984380.1
n.a. receptor-like protein kinase 3 precursor [Glycine max] gi|351726467|ref|NP_001235080.1| chr2 29015251 29019497 -
1 domain prediction
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Lj2g3v2904860.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357493511|ref|XP_003617044.1| chr2 37956427 37959713 +
1 domain prediction
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Lj2g3v2904870.1
n.a. CM0545.400.nc [Lotus japonicus] gi|164605529|dbj|BAF98595.1| chr2 37956427 37959713 +
1 domain prediction
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Lj2g3v3223910.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561446|ref|XP_003548992.1| chr2 41179304 41182739 +
1 domain prediction
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Lj2g3v3223920.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561450|ref|XP_003548994.1| chr2 41179304 41182435 +
1 domain prediction
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Lj2g3v3223950.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357492251|ref|XP_003616414.1| chr2 41185140 41188544 +
1 domain prediction
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Lj2g3v3223970.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357495155|ref|XP_003617866.1| chr2 41195118 41197721 +
1 domain prediction
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Lj3g3v1204560.1
n.a. PREDICTED: leucine-rich repeat-containing protein 9-like isoform X1 [Cicer arietinum] gi|502083492|ref|XP_004487476.1| chr3 15892973 15896032 +
1 domain prediction
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Lj3g3v2733950.1
n.a. Protein phosphatase 1 regulatory subunit [Medicago truncatula] gi|357520899|ref|XP_003630738.1| chr3 33595214 33599527 +
1 domain prediction
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Lj3g3v2888220.1
n.a. Outer arm dynein light chain 1 protein [Arabidopsis thaliana] gi|30679417|ref|NP_192235.3| chr3 35662223 35677691 -
1 domain prediction
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Lj4g3v0189790.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max] gi|356510820|ref|XP_003524132.1| chr4 2366534 2371382 -
1 domain prediction
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Lj4g3v0423040.1
n.a. PREDICTED: receptor-like protein kinase 5-like [Vitis vinifera] gi|225470187|ref|XP_002268274.1| chr4 5588422 5591641 +
1 domain prediction
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Lj4g3v0450430.1
n.a. PREDICTED: receptor-like protein kinase 5-like [Vitis vinifera] gi|225470187|ref|XP_002268274.1| chr4 6298559 6307394 -
1 domain prediction
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Lj4g3v1463040.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Glycine max] gi|356562708|ref|XP_003549611.1| chr4 22517029 22522025 +
1 domain prediction
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Lj4g3v1463050.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Glycine max] gi|356562708|ref|XP_003549611.1| chr4 22517095 22522701 +
1 domain prediction
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Lj4g3v1474100.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max] gi|356513621|ref|XP_003525510.1| chr4 22554084 22558417 +
1 domain prediction
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Lj4g3v1474100.2
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max] gi|356513621|ref|XP_003525510.1| chr4 22554106 22558417 +
1 domain prediction
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Lj4g3v1474110.1
n.a. n.a. chr4 22554275 22559088 -
1 domain prediction
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Lj4g3v3115120.1
n.a. leucine-rich repeat family protein [Arabidopsis lyrata subsp]. lyrata] gi|297847122|ref|XP_002891442.1| chr4 42222257 42229565 +
1 domain prediction
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Lj5g3v1986530.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|358348670|ref|XP_003638367.1| chr5 27871532 27873710 -
1 domain prediction
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Lj5g3v1988620.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|358348670|ref|XP_003638367.1| chr5 27891969 27893313 -
1 domain prediction
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Lj5g3v2045230.1
n.a. Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao] gi|508713910|gb|EOY05807.1| chr5 29020088 29026688 -
1 domain prediction
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Lj5g3v2241160.1
n.a. n.a. chr5 32333963 32352193 -
1 domain prediction
 –