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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF88697
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 96 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007239.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Cicer arietinum] gi|502154147|ref|XP_004509600.1| chr0 2811159 2819313 -
2 domain predictions
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Lj0g3v0061709.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Cicer arietinum] gi|502152569|ref|XP_004508987.1| chr0 20689338 20692540 -
2 domain predictions
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Lj0g3v0128679.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356508242|ref|XP_003522868.1| chr0 58166236 58169952 +
2 domain predictions
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Lj0g3v0183909.1
n.a. PREDICTED: lon protease homolog 1, mitochondrial-like [Glycine max] gi|356533540|ref|XP_003535321.1| chr0 89371038 89383274 +
2 domain predictions
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Lj0g3v0265989.1
n.a. RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|238479547|ref|NP_001154572.1| chr0 137758445 137761195 +
2 domain predictions
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Lj0g3v0266169.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356546288|ref|XP_003541561.1| chr0 137822125 137828672 +
2 domain predictions
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Lj0g3v0269559.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Cicer arietinum] gi|502154147|ref|XP_004509600.1| chr0 139649442 139651574 -
2 domain predictions
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Lj0g3v0293009.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like isoform X1 [Cicer arietinum] gi|502123658|ref|XP_004498209.1| chr0 152088549 152092608 +
2 domain predictions
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Lj0g3v0303819.1
n.a. PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Glycine max] gi|356562795|ref|XP_003549654.1| chr0 158242561 158243615 -
2 domain predictions
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Lj0g3v0312049.1
n.a. PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Glycine max] gi|356508525|ref|XP_003523006.1| chr0 162880309 162891154 +
2 domain predictions
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Lj0g3v0328909.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like [Glycine max] gi|356577497|ref|XP_003556861.1| chr0 171938958 171939713 -
2 domain predictions
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Lj0g3v0342479.1
n.a. PREDICTED: ribosomal RNA large subunit methyltransferase I-like [Glycine max] gi|356526415|ref|XP_003531813.1| chr0 179535764 179541683 +
2 domain predictions
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Lj0g3v0350409.1
n.a. PREDICTED: protein cereblon-like [Glycine max] gi|356510047|ref|XP_003523752.1| chr0 184139627 184145228 +
2 domain predictions
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Lj0g3v0358999.1
n.a. PREDICTED: ATP sulfurylase 2-like [Cicer arietinum] gi|502148790|ref|XP_004507270.1| chr0 189005669 189009834 -
2 domain predictions
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Lj1g3v0052190.1
n.a. n.a. chr1 357500 364206 +
2 domain predictions
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Lj1g3v0318000.1
n.a. PREDICTED: ribosomal RNA small subunit methyltransferase E-like [Cicer arietinum] gi|502120160|ref|XP_004496867.1| chr1 3598316 3600641 +
2 domain predictions
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Lj1g3v0318000.2
n.a. PREDICTED: ribosomal RNA small subunit methyltransferase E-like [Cicer arietinum] gi|502120160|ref|XP_004496867.1| chr1 3598316 3600641 +
2 domain predictions
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Lj1g3v1008920.1
n.a. Malignant T cell-amplified sequence 1-A [Medicago truncatula] gi|357464025|ref|XP_003602294.1| chr1 12864016 12868133 -
2 domain predictions
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Lj1g3v2138380.1
n.a. PREDICTED: lon protease 2-like [Cicer arietinum] gi|502131384|ref|XP_004500968.1| chr1 25654692 25655304 +
2 domain predictions
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Lj1g3v2139540.1
n.a. PREDICTED: lon protease 2-like [Cicer arietinum] gi|502131384|ref|XP_004500968.1| chr1 25690960 25691490 +
2 domain predictions
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Lj1g3v3904410.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max] gi|356560426|ref|XP_003548493.1| chr1 45483181 45490448 -
2 domain predictions
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Lj1g3v4059050.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356504621|ref|XP_003521094.1| chr1 48012042 48015981 +
2 domain predictions
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Lj2g3v1988690.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Cicer arietinum] gi|502160472|ref|XP_004511756.1| chr2 29475390 29484392 -
2 domain predictions
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Lj2g3v1989010.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29682391 29694387 -
2 domain predictions
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Lj2g3v1989020.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29696910 29699948 -
2 domain predictions
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Lj2g3v1989030.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29702847 29705210 -
2 domain predictions
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Lj2g3v3085360.2
n.a. Ribosomal RNA small subunit methyltransferase B [Medicago truncatula] gi|357494215|ref|XP_003617396.1| chr2 39681153 39688654 -
2 domain predictions
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Lj2g3v3339680.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356499501|ref|XP_003518578.1| chr2 42793639 42797488 -
2 domain predictions
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Lj3g3v0369360.1
n.a. RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|238479547|ref|NP_001154572.1| chr3 2872905 2878588 +
2 domain predictions
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Lj3g3v0462070.1
n.a. PREDICTED: eukaryotic translation initiation factor 2D-like [Glycine max] gi|356544210|ref|XP_003540547.1| chr3 5081798 5087660 -
2 domain predictions
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Lj3g3v1309440.1
n.a. PREDICTED: lon protease 2-like [Glycine max] gi|356510000|ref|XP_003523729.1| chr3 16939757 16940590 +
2 domain predictions
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Lj4g3v1909910.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| chr4 27054406 27058264 -
2 domain predictions
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Lj5g3v2045020.1
n.a. PREDICTED: ATP sulfurylase 1, chloroplastic-like [Cicer arietinum] gi|502119550|ref|XP_004496657.1| chr5 28919768 28923182 -
2 domain predictions
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Lj5g3v2244670.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Cicer arietinum] gi|502106852|ref|XP_004493077.1| chr5 32535927 32538525 -
2 domain predictions
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Lj6g3v0156100.1
n.a. SET domain protein [Populus trichocarpa] gi|224126633|ref|XP_002329603.1| chr6 1604629 1606162 +
2 domain predictions
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Lj6g3v0156120.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like [Glycine max] gi|356577497|ref|XP_003556861.1| chr6 1629200 1630657 +
2 domain predictions
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Lj6g3v2193660.1
n.a. PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] gi|356525850|ref|XP_003531534.1| chr6 25438038 25459195 +
2 domain predictions
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Lj6g3v2193670.1
n.a. PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] gi|356525850|ref|XP_003531534.1| chr6 25457379 25459843 +
2 domain predictions
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LotjaGi1g1v0004400.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 804738 813954 +
2 domain predictions
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LotjaGi1g1v0004400.2
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 806178 813954 +
2 domain predictions
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LotjaGi1g1v0043900.1
n.a. Ribosomal RNA small subunit methyltransferase B; TAIR: AT1G06560.1 NOL1/NOP2/sun family protein; Swiss-Prot: sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6; TrEMBL-Plants: tr|K7M4N7|K7M4N7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0043900 LjG1.1_chr1 5963776 5971892 +
2 domain predictions
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LotjaGi1g1v0174700.1
n.a. Ribosomal RNA small subunit methyltransferase E; TAIR: AT1G50000.1 methyltransferase; Swiss-Prot: sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E; TrEMBL-Plants: tr|A0A0S3SM93|A0A0S3SM93_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0174700 LjG1.1_chr1 33491788 33495154 +
2 domain predictions
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LotjaGi1g1v0194200.1
n.a. RING finger protein 141; TAIR: AT1G18660.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|D3YY23|LONF1_MOUSE LON peptidase N-terminal domain and RING finger protein 1; TrEMBL-Plants: tr|K7KKL8|K7KKL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0194200 LjG1.1_chr1 38489712 38501349 -
2 domain predictions
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LotjaGi1g1v0290800.1
n.a. Malignant T-cell-amplified sequence 1; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q2KIE4|MCTS1_BOVIN Malignant T-cell-amplified sequence 1; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 LjG1.1_chr1 70646508 70650751 -
2 domain predictions
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LotjaGi1g1v0290800.2
n.a. Malignant T-cell-amplified sequence 1 like; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q86KL4|MCTS1_DICDI Malignant T-cell-amplified sequence 1 homolog; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 LjG1.1_chr1 70648467 70650598 -
2 domain predictions
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LotjaGi1g1v0409100.1
n.a. ATP-dependent protease LA (Lon) domain protein; TAIR: AT2G25740.1 ATP-dependent protease La (LON) domain protein; Swiss-Prot: sp|Q68EH9|CRBN_DANRE Protein cereblon; TrEMBL-Plants: tr|A0A0L9UH25|A0A0L9UH25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0409100 LjG1.1_chr1 89954280 89960967 -
2 domain predictions
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LotjaGi1g1v0633100.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|A0A0R0FUI7|A0A0R0FUI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633100 LjG1.1_chr1 118724052 118732969 -
2 domain predictions
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LotjaGi1g1v0655200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121468708 121473568 -
2 domain predictions
 –
LotjaGi1g1v0655200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
2 domain predictions
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LotjaGi1g1v0655200.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
2 domain predictions
 –