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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SignalP-noTM_GRAM_NEGATIVE
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 885 results. Now displaying 1 of 18 with 50 rows per page. This search has taken 15.033s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3023720.1
LjKlavier leucine-rich repeat receptor-like kinase [Lotus japonicus] gi|353677868|dbj|BAL04590.1| chr1 34474974 34479067 +
1 domain prediction
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Lj4g3v0281040.1
LjFls2 flagellin-sensing 2-like protein [Lotus japonicus] gi|355346200|gb|AER60531.1| chr4 3284600 3289068 +
1 domain prediction
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Lj6g3v1249630.1
LjCkx4 FAD linked oxidase, N-terminal [Medicago truncatula] gi|124360772|gb|ABN08744.1| chr6 15350730 15354064 -
1 domain prediction
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Lj0g3v0003259.3
n.a. PREDICTED: UPF0420 protein C16orf58 homolog [Glycine max] gi|356545865|ref|XP_003541354.1| chr0 1185009 1188936 +
1 domain prediction
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Lj0g3v0018789.1
n.a. PREDICTED: thioredoxin reductase 2-like [Glycine max] gi|356561017|ref|XP_003548782.1| chr0 7397213 7400094 +
1 domain prediction
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Lj0g3v0019309.1
n.a. PREDICTED: protein COBRA-like [Glycine max] gi|356568809|ref|XP_003552600.1| chr0 7656745 7660099 -
1 domain prediction
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Lj0g3v0019969.1
n.a. Glucan endo-1,3-beta-glucosidase [Medicago truncatula] gi|357462665|ref|XP_003601614.1| chr0 7960728 7962056 -
1 domain prediction
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Lj0g3v0022029.1
n.a. Kinase-like protein [Medicago truncatula] gi|357491853|ref|XP_003616214.1| chr0 8901816 8902952 +
1 domain prediction
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Lj0g3v0035439.1
n.a. PREDICTED: probable receptor-like protein kinase At1g11050-like [Cicer arietinum] gi|502124054|ref|XP_004498364.1| chr0 11295149 11297703 -
1 domain prediction
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Lj0g3v0036679.1
n.a. Plant glycogenin-like starch initiation protein 6 isoform 2 [Theobroma cacao] gi|508718936|gb|EOY10833.1| chr0 11737660 11738534 -
1 domain prediction
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Lj0g3v0036859.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 4-like [Glycine max] gi|356525258|ref|XP_003531243.1| chr0 11839473 11842994 +
1 domain prediction
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Lj0g3v0037469.1
n.a. VosA [Aspergillus flavus] gi|293573315|gb|ADE45325.1| chr0 12042980 12044177 -
1 domain prediction
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Lj0g3v0045329.1
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Cicer arietinum] gi|502114811|ref|XP_004495057.1| chr0 14905769 14908489 +
1 domain prediction
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Lj0g3v0046999.1
n.a. PREDICTED: fasciclin-like arabinogalactan protein 13-like [Cicer arietinum] gi|502082512|ref|XP_004487189.1| chr0 15682400 15683023 +
1 domain prediction
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Lj0g3v0048599.1
n.a. PREDICTED: 50S ribosomal protein L28, chloroplastic-like [Cicer arietinum] gi|502123083|ref|XP_004497992.1| chr0 16402774 16405526 -
1 domain prediction
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Lj0g3v0054479.1
n.a. Uncharacterized protein TCM_042320 [Theobroma cacao] gi|508787480|gb|EOY34736.1| chr0 17488571 17491063 +
1 domain prediction
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Lj0g3v0055049.1
n.a. PREDICTED: germin-like protein 5-1-like [Glycine max] gi|356572882|ref|XP_003554594.1| chr0 17656151 17657382 +
1 domain prediction
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Lj0g3v0055079.1
n.a. PREDICTED: cathepsin B-like [Glycine max] gi|356572872|ref|XP_003554589.1| chr0 17728277 17733704 +
1 domain prediction
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Lj0g3v0059499.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like isoform X2 [Cicer arietinum] gi|502166662|ref|XP_004513950.1| chr0 19683288 19688507 +
1 domain prediction
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Lj0g3v0060629.1
n.a. PREDICTED: beta-galactosidase 1-like [Glycine max] gi|356526021|ref|XP_003531618.1| chr0 20224714 20226884 -
1 domain prediction
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Lj0g3v0061669.1
n.a. Pectinesterase inhibitor [Medicago truncatula] gi|357513037|ref|XP_003626807.1| chr0 20678264 20678856 -
1 domain prediction
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Lj0g3v0062509.1
n.a. mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana] gi|42570018|ref|NP_671802.2| chr0 21023116 21024008 -
1 domain prediction
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Lj0g3v0062829.1
n.a. Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao] gi|508704884|gb|EOX96780.1| chr0 21170605 21171919 -
1 domain prediction
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Lj0g3v0062829.2
n.a. Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao] gi|508704884|gb|EOX96780.1| chr0 21170605 21171919 -
1 domain prediction
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Lj0g3v0063399.1
n.a. PREDICTED: leucine-rich repeat extensin-like protein 3-like [Cicer arietinum] gi|502137809|ref|XP_004503194.1| chr0 21508234 21509373 +
1 domain prediction
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Lj0g3v0063859.1
n.a. PREDICTED: classical arabinogalactan protein 1-like [Cicer arietinum] gi|502079397|ref|XP_004486247.1| chr0 21798880 21799467 +
1 domain prediction
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Lj0g3v0064009.1
n.a. PREDICTED: protein RALF-like 9-like [Cicer arietinum] gi|502183646|ref|XP_004517180.1| chr0 21890968 21891198 -
1 domain prediction
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Lj0g3v0065389.1
n.a. Seed specific protein Bn15D18B [Medicago truncatula] gi|357474035|ref|XP_003607302.1| chr0 22714753 22715165 -
1 domain prediction
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Lj0g3v0066349.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Cicer arietinum] gi|502134366|ref|XP_004502093.1| chr0 23322310 23323491 +
1 domain prediction
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Lj0g3v0069349.1
n.a. PREDICTED: wall-associated receptor kinase-like 8-like [Glycine max] gi|356532447|ref|XP_003534784.1| chr0 25034120 25036247 +
1 domain prediction
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Lj0g3v0069539.2
n.a. PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum] gi|502155265|ref|XP_004510012.1| chr0 25149280 25154621 +
1 domain prediction
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Lj0g3v0070479.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 9-like [Cicer arietinum] gi|502129446|ref|XP_004500308.1| chr0 25683767 25688056 -
1 domain prediction
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Lj0g3v0070759.1
n.a. 21 kDa protein [Medicago truncatula] gi|357455917|ref|XP_003598239.1| chr0 25885860 25886937 -
1 domain prediction
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Lj0g3v0073579.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like isoform X1 [Cicer arietinum] gi|502096414|ref|XP_004490730.1| chr0 27615994 27623359 +
1 domain prediction
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Lj0g3v0073579.3
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Glycine max] gi|356551958|ref|XP_003544339.1| chr0 27615994 27623359 +
1 domain prediction
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Lj0g3v0076019.1
n.a. Mannan endo-1,4-beta-mannosidase [Medicago truncatula] gi|357483557|ref|XP_003612065.1| chr0 28937468 28950475 +
1 domain prediction
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Lj0g3v0077119.1
n.a. PREDICTED: aspartic proteinase-like [Glycine max] gi|356555682|ref|XP_003546159.1| chr0 29506857 29510333 -
1 domain prediction
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Lj0g3v0078649.1
n.a. PREDICTED: monocopper oxidase-like protein SKU5-like [Glycine max] gi|356563298|ref|XP_003549901.1| chr0 30301033 30305727 +
1 domain prediction
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Lj0g3v0079909.1
n.a. PREDICTED: acid phosphatase 1-like [Cicer arietinum] gi|502158378|ref|XP_004511128.1| chr0 30878956 30882758 -
1 domain prediction
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Lj0g3v0080529.1
n.a. Cu/Zn-superoxide dismutase copper chaperone [Glycine max] gi|351722110|ref|NP_001235441.1| chr0 31227500 31233353 +
1 domain prediction
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Lj0g3v0083289.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 32893415 32902115 +
1 domain prediction
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Lj0g3v0083289.2
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 32893415 32896729 +
1 domain prediction
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Lj0g3v0084019.1
n.a. PREDICTED: wall-associated receptor kinase 3-like [Glycine max] gi|356518585|ref|XP_003527959.1| chr0 33421371 33422413 +
1 domain prediction
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Lj0g3v0085029.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr0 33944955 33946695 +
1 domain prediction
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Lj0g3v0086549.1
n.a. Beta-galactosidase [Medicago truncatula] gi|357455519|ref|XP_003598040.1| chr0 34968797 34971304 +
1 domain prediction
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Lj0g3v0090439.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum] gi|502148812|ref|XP_004507279.1| chr0 37254703 37257214 -
1 domain prediction
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Lj0g3v0090919.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120-like isoform X1 [Cicer arietinum] gi|502124346|ref|XP_004498487.1| chr0 37590076 37591309 +
1 domain prediction
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Lj0g3v0090929.1
n.a. n.a. chr0 37590076 37593037 -
1 domain prediction
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Lj0g3v0091339.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 37827665 37829782 +
1 domain prediction
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Lj0g3v0092319.1
n.a. hypothetical protein PGUG_01383 [Meyerozyma guilliermondii ATCC 6260] gi|190345406|gb|EDK37285.2| chr0 38402843 38403064 -
1 domain prediction
 –