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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • TRANSMEMBRANE
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 20223 results. Now displaying 1 of 405 with 50 rows per page. This search has taken 16.638s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3023720.1
LjKlavier leucine-rich repeat receptor-like kinase [Lotus japonicus] gi|353677868|dbj|BAL04590.1| chr1 34474974 34479067 +
1 domain prediction
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Lj1g3v4590690.1
LjEin2a PREDICTED: ethylene-insensitive protein 2-like [Cicer arietinum] gi|502111178|ref|XP_004493976.1| chr1 54762167 54769698 +
1 domain prediction
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Lj1g3v5061360.1
LjCastor RecName: Full=Ion channel CASTORgi|58430443|dbj|BAD89019.1| ion channel [Lotus japonicus] gi|62286596|sp|Q5H8A6.1|CASTO_LOTJA chr1 62096491 62107149 +
1 domain prediction
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Lj2g3v0776860.1
LjSst1 sst1 protein [Lotus japonicus] gi|112362444|emb|CAL36108.1| chr2 12152266 12158043 -
1 domain prediction
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Lj2g3v1467920.1
LjSymRK receptor-like kinase SYMRK [Lotus japonicus] gi|21622628|gb|AAM67418.1|AF492655_1 chr2 23244149 23250251 -
1 domain prediction
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Lj2g3v1828350.1
LjNfr5 Nod-factor receptor 5 [Lotus japonicus] gi|37651074|emb|CAE02597.1| chr2 27399749 27402036 -
1 domain prediction
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Lj2g3v2904690.1
LjNfr1 Nod-factor receptor 1b [Lotus japonicus] gi|37651060|emb|CAE02590.1| chr2 37916948 37922957 +
1 domain prediction
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Lj3g3v0809870.1
LjCkx8 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356539470|ref|XP_003538221.1| chr3 9845762 9848884 -
1 domain prediction
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Lj3g3v1739280.1
LjCCaMK RecName: Full=Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase; Short=LjCCaMKgi|116634228|emb|CAJ76699.1| calcium calmodulin-dependent protein kinase [Lotus japonicus] gi|122250440|sp|A0AAR7.1|CCAMK_LOTJA chr3 21980800 21987089 +
1 domain prediction
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Lj3g3v3375770.1
LjHar1 hypernodulation aberrant root formation protein [Lotus japonicus] gi|24940156|emb|CAD42335.1| chr3 41520393 41525499 +
1 domain prediction
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Lj3g3v3650360.1
LjCkx6 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356542934|ref|XP_003539919.1| chr3 44514871 44518966 +
1 domain prediction
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Lj4g3v0281040.1
LjFls2 flagellin-sensing 2-like protein [Lotus japonicus] gi|355346200|gb|AER60531.1| chr4 3284600 3289068 +
1 domain prediction
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Lj5g3v0659810.1
LjEin2b PREDICTED: ethylene-insensitive protein 2-like [Glycine max] gi|356548291|ref|XP_003542536.1| chr5 9367685 9375375 -
1 domain prediction
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Lj6g3v2275020.1
LjPollux RecName: Full=Ion channel POLLUXgi|58430445|dbj|BAD89020.1| ion channel [Lotus japonicus] gi|62287141|sp|Q5H8A5.1|POLLU_LOTJA chr6 26694056 26700672 -
1 domain prediction
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chr1.CM0094.110.r2.m n.a. Cleft lip and palate transmembrane protein, putative; n=1; Ricinus communis|RepID=B9RW92_RICCO E-value=0.0 .%ID=80.69 chr1 19435269 19441511 - – –
chr1.CM0104.1790.r2.d n.a. Transmembrane and coiled-coil domains protein, putative; n=1; Ricinus communis|RepID=B9SWJ7_RICCO E-value=3e-82 .%ID=84.38 chr1 49123883 49124452 + – –
chr1.CM0105.1610.r2.m n.a. Zinc ion transmembrane transporter; n=1; Medicago sativa|RepID=C9WEK2_MEDSA E-value=1e-164 .%ID=74.64 chr1 66348800 66349942 + – –
chr1.CM0105.1890.r2.m n.a. Leucine-rich repeat transmembrane protein kinase; n=1; Glycine max|RepID=C6ZRX0_SOYBN E-value=1e-149 .%ID=88.40 chr1 66525149 66532646 + – –
chr1.CM0393.670.r2.d n.a. Purine transmembrane transporter; n=1; Cucumis melo subsp. melo|RepID=E5GCA0_CUCME E-value=1e-59 .%ID=64.64 chr1 34468070 34468261 + – –
chr1.CM0393.680.r2.d n.a. Purine transmembrane transporter; n=1; Cucumis melo subsp. melo|RepID=E5GCA0_CUCME E-value=1e-59 .%ID=64.64 chr1 34469902 34470468 + – –
chr2.CM0803.410.r2.m n.a. Leucine-rich repeat transmembrane protein kinase; n=1; Glycine max|RepID=C6ZRN3_SOYBN E-value=1e-156 .%ID=94.62 chr2 25303256 25313284 + – –
chr3.CM0208.260.r2.m n.a. Zinc ion transmembrane transporter; n=1; Medicago sativa|RepID=C9WEK2_MEDSA E-value=1e-164 .%ID=74.64 chr3 33858065 33859288 + – –
chr4.CM0075.80.r2.m n.a. Transmembrane emp24 domain-containing protein 10, putative; n=1; Ricinus communis|RepID=B9S912_RICCO E-value=5e-93 .%ID=78.57 chr4 11718792 11721832 - – –
chr4.CM0432.3660.r2.d n.a. Proline and glycine rich transmembrane protein; n=1; Mycobacterium ulcerans Agy99|Rep: Proline and glycine rich transmembrane protein - Mycobacterium ulcerans (strain Agy99), partial (7%) chr4 8950399 8952661 + – –
chr5.CM0299.200.r2.m n.a. Calcium-binding EF-hand; Ferric reductase-like transmembrane component (Fragment); n=2; Medicago truncatula|RepID=Q5ENY3_MEDTR E-value=1e-177 .%ID=83.29 chr5 24497454 24504189 + – –
chr5.CM0299.210.r2.m n.a. Calcium-binding EF-hand; Ferric reductase-like transmembrane component (Fragment); n=2; Medicago truncatula|RepID=Q5ENY3_MEDTR E-value=1e-177 .%ID=83.29 chr5 24512743 24518342 + – –
chr5.CM0299.570.r2.d n.a. Calcium-binding EF-hand; Ferric reductase-like transmembrane component (Fragment); n=2; Medicago truncatula|RepID=Q5ENY3_MEDTR E-value=1e-177 .%ID=83.29 chr5 24693600 24700335 + – –
chr5.CM0299.580.r2.d n.a. Calcium-binding EF-hand; Ferric reductase-like transmembrane component (Fragment); n=2; Medicago truncatula|RepID=Q5ENY3_MEDTR E-value=1e-177 .%ID=83.29 chr5 24708895 24714488 + – –
chr5.CM0492.310.r2.m n.a. nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter; n=1; Arabidopsis thaliana|RepID=UPI000173920E E-value=4e-58 .%ID=81.68 chr5 37029804 37037239 - – –
chr5.CM0696.150.r2.m n.a. Lung seven transmembrane receptor, putative; n=1; Ricinus communis|RepID=B9SG95_RICCO E-value=0.0 .%ID=83.93 chr5 8210708 8212030 + – –
Lj0g3v0000059.1
n.a. PREDICTED: histone deacetylase 6-like [Takifugu rubripes] gi|410898956|ref|XP_003962963.1| chr0 11019 11812 +
1 domain prediction
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Lj0g3v0000109.1
n.a. n.a. chr0 29411 37463 +
1 domain prediction
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Lj0g3v0000249.1
n.a. n.a. chr0 118941 120950 -
1 domain prediction
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Lj0g3v0000559.1
n.a. PREDICTED: CLAVATA3/ESR (CLE)-related protein 6-like [Cicer arietinum] gi|502179021|ref|XP_004516357.1| chr0 240462 241193 -
1 domain prediction
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Lj0g3v0000569.1
n.a. n.a. chr0 241948 242253 -
1 domain prediction
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Lj0g3v0000719.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 312103 314781 +
1 domain prediction
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Lj0g3v0001669.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508701431|gb|EOX93327.1| chr0 417398 424800 -
1 domain prediction
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Lj0g3v0001749.1
n.a. type IV secretion protein Rhs [Pseudomonas sp]. GM18] gi|495209743|ref|WP_007934523.1| chr0 469184 470393 +
1 domain prediction
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Lj0g3v0001859.1
n.a. Receptor kinase [Medicago truncatula] gi|357501751|ref|XP_003621164.1| chr0 548278 551234 +
1 domain prediction
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Lj0g3v0001979.2
n.a. n.a. chr0 609467 615237 -
1 domain prediction
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Lj0g3v0002009.1
n.a. hypothetical protein LEMA_P110070.1 [Leptosphaeria maculans JN3] gi|396477202|ref|XP_003840221.1| chr0 622435 622833 -
1 domain prediction
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Lj0g3v0002109.1
n.a. n.a. chr0 669520 677708 +
1 domain prediction
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Lj0g3v0002119.1
n.a. PREDICTED: rho GTPase-activating protein gacA-like isoform X2 [Cicer arietinum] gi|502145805|ref|XP_004506186.1| chr0 669520 676725 -
1 domain prediction
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Lj0g3v0002119.2
n.a. PREDICTED: rho GTPase-activating protein gacA-like isoform X2 [Cicer arietinum] gi|502145805|ref|XP_004506186.1| chr0 669520 677708 -
1 domain prediction
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Lj0g3v0002119.3
n.a. PREDICTED: rho GTPase-activating protein gacA-like isoform X2 [Cicer arietinum] gi|502145805|ref|XP_004506186.1| chr0 669520 677708 -
1 domain prediction
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Lj0g3v0002139.1
n.a. unknown [Lotus japonicus] gi|388491638|gb|AFK33885.1| chr0 681014 681328 -
1 domain prediction
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Lj0g3v0002229.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357458551|ref|XP_003599556.1| chr0 702402 708057 -
1 domain prediction
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Lj0g3v0002279.1
n.a. ORF9 [Streptomyces phage VWB] gi|41057276|ref|NP_958289.1| chr0 716758 717164 -
1 domain prediction
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Lj0g3v0002769.1
n.a. transmembrane amino acid transporter protein-like protein [Leishmania mexicana MHOM]/GT/2001/U1103] gi|401420634|ref|XP_003874806.1| chr0 934231 934790 -
1 domain prediction
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Lj0g3v0003149.1
n.a. phosphate transporter 5 [Astragalus sinicus] gi|407911912|gb|AFU50504.1| chr0 1131293 1134500 +
1 domain prediction
 –