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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • cd00009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 532 results. Now displaying 1 of 11 with 50 rows per page. This search has taken 0.083s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0045059.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502091202|ref|XP_004489475.1| chr0 14809885 14814337 +
1 domain prediction
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Lj0g3v0047499.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357493209|ref|XP_003616893.1| chr0 15886067 15893084 -
1 domain prediction
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Lj0g3v0050609.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357493209|ref|XP_003616893.1| chr0 17224612 17227251 -
1 domain prediction
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Lj0g3v0058969.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Fragaria vesca subsp]. vesca] gi|470128173|ref|XP_004300022.1| chr0 19474318 19479241 +
1 domain prediction
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Lj0g3v0061699.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Glycine max] gi|356563427|ref|XP_003549964.1| chr0 20680891 20689343 -
1 domain prediction
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Lj0g3v0064119.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 22003038 22014728 -
1 domain prediction
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Lj0g3v0064119.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 22003038 22014728 -
1 domain prediction
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Lj0g3v0064119.3
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 22003038 22014728 -
1 domain prediction
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Lj0g3v0069249.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic-like isoform X2 [Cicer arietinum] gi|502178413|ref|XP_004516247.1| chr0 24946848 24953550 +
1 domain prediction
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Lj0g3v0077349.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Glycine max] gi|356553056|ref|XP_003544874.1| chr0 29661584 29669624 +
1 domain prediction
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Lj0g3v0085309.1
n.a. PREDICTED: DNA replication licensing factor mcm4-B-like [Glycine max] gi|356538731|ref|XP_003537854.1| chr0 34113337 34118635 -
1 domain prediction
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Lj0g3v0085309.2
n.a. PREDICTED: DNA replication licensing factor mcm4-B-like [Glycine max] gi|356538731|ref|XP_003537854.1| chr0 34113755 34118635 -
1 domain prediction
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Lj0g3v0088449.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357491999|ref|XP_003616288.1| chr0 36134096 36136359 +
1 domain prediction
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Lj0g3v0097779.1
n.a. TIR-NBS-LRR RCT1-like resistance protein [Medicago sativa] gi|193584702|gb|ACF19651.1| chr0 41362190 41364781 +
1 domain prediction
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Lj0g3v0102289.1
n.a. PREDICTED: replication factor C subunit 3-like [Glycine max] gi|356511754|ref|XP_003524588.1| chr0 43507085 43512829 +
1 domain prediction
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Lj0g3v0104279.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Glycine max] gi|356568662|ref|XP_003552529.1| chr0 44583675 44585230 +
1 domain prediction
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Lj0g3v0116309.1
n.a. PREDICTED: ruvB-like 1-like [Cicer arietinum] gi|502132683|ref|XP_004501479.1| chr0 51157047 51158428 +
1 domain prediction
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Lj0g3v0121839.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 54397865 54401816 +
1 domain prediction
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Lj0g3v0122529.1
n.a. PREDICTED: 26S proteasome regulatory subunit 4 homolog A-like [Glycine max] gi|356505102|ref|XP_003521331.1| chr0 54724839 54728135 +
1 domain prediction
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Lj0g3v0125859.1
n.a. PREDICTED: cell division cycle protein 48 homolog [Cicer arietinum] gi|502121999|ref|XP_004497529.1| chr0 56582836 56586596 -
1 domain prediction
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Lj0g3v0130989.1
n.a. Chaperone protein clpB [Medicago truncatula] gi|357466045|ref|XP_003603307.1| chr0 59549708 59550600 -
1 domain prediction
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Lj0g3v0133229.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 60912920 60921656 +
1 domain prediction
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Lj0g3v0134599.1
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-like [Solanum lycopersicum] gi|460390712|ref|XP_004240969.1| chr0 61757708 61765976 +
1 domain prediction
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Lj0g3v0139779.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Cicer arietinum] gi|502123616|ref|XP_004498190.1| chr0 64041624 64047127 +
1 domain prediction
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Lj0g3v0162289.1
n.a. TIR-NBS-LRR RCT1-like resistance protein [Medicago sativa] gi|193584702|gb|ACF19651.1| chr0 76512312 76513776 -
1 domain prediction
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Lj0g3v0165709.1
n.a. PREDICTED: chaperone protein ClpB4, mitochondrial-like [Glycine max] gi|356507345|ref|XP_003522428.1| chr0 78669764 78671891 -
1 domain prediction
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Lj0g3v0166219.1
n.a. F-box protein [Medicago truncatula] gi|357504105|ref|XP_003622341.1| chr0 79052711 79057831 +
1 domain prediction
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Lj0g3v0167069.1
n.a. Disease resistance-like protein [Medicago truncatula] gi|357486563|ref|XP_003613569.1| chr0 79417979 79420367 -
1 domain prediction
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Lj0g3v0183909.1
n.a. PREDICTED: lon protease homolog 1, mitochondrial-like [Glycine max] gi|356533540|ref|XP_003535321.1| chr0 89371038 89383274 +
1 domain prediction
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Lj0g3v0195169.1
n.a. PREDICTED: mitochondrial chaperone BCS1-like [Glycine max] gi|356571258|ref|XP_003553796.1| chr0 95220144 95222275 -
1 domain prediction
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Lj0g3v0217929.1
n.a. Os06g0225900 [Oryza sativa Japonica Group] gi|297605428|ref|NP_001057200.2| chr0 111009332 111010309 +
1 domain prediction
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Lj0g3v0223409.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr0 115180723 115187482 +
1 domain prediction
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Lj0g3v0238769.1
n.a. PREDICTED: peroxisomal biogenesis factor 6-like, partial [Cucumis sativus] gi|449498547|ref|XP_004160567.1| chr0 123902037 123904301 -
1 domain prediction
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Lj0g3v0250689.1
n.a. ATPase family AAA domain-containing protein 1-A isoform 2, partial [Theobroma cacao] gi|508775200|gb|EOY22456.1| chr0 129955004 129959211 -
1 domain prediction
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Lj0g3v0250689.2
n.a. ATPase family AAA domain-containing protein 1-A isoform 1 [Theobroma cacao] gi|508775199|gb|EOY22455.1| chr0 129955004 129957281 -
1 domain prediction
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Lj0g3v0254349.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 132058195 132060524 +
1 domain prediction
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Lj0g3v0258049.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 133969077 133974426 +
1 domain prediction
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Lj0g3v0263339.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136542223 136546874 +
1 domain prediction
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Lj0g3v0263339.2
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136544328 136546874 +
1 domain prediction
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Lj0g3v0273379.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Cicer arietinum] gi|502162893|ref|XP_004512653.1| chr0 141690230 141699140 +
1 domain prediction
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Lj0g3v0273649.1
n.a. PREDICTED: cell division control protein 6 homolog [Cicer arietinum] gi|502129264|ref|XP_004500243.1| chr0 141850761 141856471 -
1 domain prediction
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Lj0g3v0273739.2
n.a. FTSH protease 12 isoform 2 [Theobroma cacao] gi|508722244|gb|EOY14141.1| chr0 141886606 141895230 -
1 domain prediction
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Lj0g3v0283799.1
n.a. PREDICTED: LOW QUALITY PROTEIN: midasin-like [Cicer arietinum] gi|502156332|ref|XP_004510421.1| chr0 147141284 147166777 +
1 domain prediction
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Lj0g3v0291009.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like isoform X1 [Cicer arietinum] gi|502136340|ref|XP_004502651.1| chr0 151058645 151063584 +
1 domain prediction
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Lj0g3v0294279.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 152895123 152897638 -
1 domain prediction
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Lj0g3v0297389.2
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr0 154572869 154582454 -
1 domain prediction
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Lj0g3v0302489.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 157373359 157379450 -
1 domain prediction
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Lj0g3v0302489.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 157375434 157379450 -
1 domain prediction
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Lj0g3v0331109.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506778|ref|XP_003522153.1| chr0 173038503 173053389 +
1 domain prediction
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Lj0g3v0334159.1
n.a. PREDICTED: fidgetin-like protein 1-like [Glycine max] gi|356511805|ref|XP_003524613.1| chr0 174874264 174882338 -
1 domain prediction
 –