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IPR009856

Source: InterPro

Description

IPR009856 is a Light regulated Lir1.

<p>This family consists of several plant specific light regulated Lir1 proteins. Lir1 mRNA accumulates in the light, reaching maximum and minimum steady-state levels at the end of the light and dark period, respectively. Plants germinated in the dark have very low levels of lir1 mRNA, whereas plants germinated in continuous light express lir1 at an intermediate but constant level. It is thought that lir1 expression is controlled by light and a circadian clock [[cite:PUB00013042]]. Lir1 interacts with LEAF-TYPE Ferredoxin-NADP(+) oxidoreductase (LFNR), an essential chloroplast enzyme functioning in the last step of photosynthetic linear electron transfer, and forms a thylakoid protein complex with LFNR, TIC62 and TROL [[cite:PUB00087327]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009507
Cellular component Chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
Lj1g3v3904290.1
– PREDICTED: light-regulated protein-like [Cicer arietinum] gi|502106837|ref|XP_004493072.1|
Domains
4
LotjaGi3g1v0038700.1
– Light-regulated protein; TAIR: AT3G26740.1 CCR-like protein; Swiss-Prot: sp|Q03200|LIRP1_ORYSJ Light-regulated protein; TrEMBL-Plants: tr|A9PJH2|A9PJH2_9ROSI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0038700
Domains
4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
PTHR36762:SF3 PANTHER 1 50.00