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| Field | Value |
|---|---|
| Gene ID | Lj4g3v3113820 |
| Transcript ID | Lj4g3v3113820.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 0 | – | |
| PANTHER | 1 | 234 | 234 | 0 | – | |
| Phobius | 1 | 41 | 41 | – | – | |
| TMHMM | 42 | 64 | 23 | – | – | |
| Phobius | 42 | 63 | 22 | – | – | |
| Phobius | 64 | 703 | 640 | – | – | |
| SUPERFAMILY | 79 | 158 | 80 | 1.45E-17 | ||
| Gene3D | 87 | 153 | 67 | 5.00E-12 | ||
| Pfam | 92 | 157 | 66 | 1.30E-16 | ||
| SMART | 92 | 157 | 66 | 3.00E-22 | ||
| CDD | 92 | 153 | 62 | 1.01E-08 | – | |
| ProSiteProfiles | 99 | 389 | 291 | 40.972 | ||
| Coils | 142 | 162 | 21 | – | – | |
| SUPERFAMILY | 146 | 238 | 93 | 1.19E-38 | ||
| Gene3D | 158 | 236 | 79 | 2.00E-41 | ||
| Pfam | 204 | 387 | 184 | 5.40E-31 | ||
| SMART | 204 | 389 | 186 | 8.20E-30 | ||
| PANTHER | 304 | 392 | 89 | 0 | – | |
| PANTHER | 304 | 392 | 89 | 0 | – | |
| CDD | 308 | 384 | 77 | 2.78E-20 | – | |
| Gene3D | 311 | 385 | 75 | 2.00E-41 | ||
| SUPERFAMILY | 313 | 384 | 72 | 1.19E-38 | ||
| PRINTS | 314 | 328 | 15 | 1.10E-13 | ||
| PRINTS | 332 | 342 | 11 | 1.10E-13 | ||
| PRINTS | 349 | 367 | 19 | 1.10E-13 | ||
| PRINTS | 373 | 386 | 14 | 1.10E-13 | ||
| Gene3D | 409 | 538 | 130 | 4.90E-07 | – | |
| SUPERFAMILY | 410 | 535 | 126 | 5.52E-07 | ||
| ProSiteProfiles | 414 | 534 | 121 | 13.894 | ||
| PANTHER | 452 | 631 | 180 | 0 | – | |
| PANTHER | 452 | 631 | 180 | 0 | – | |
| SUPERFAMILY | 558 | 695 | 138 | 1.25E-32 | ||
| Gene3D | 558 | 698 | 141 | 3.70E-40 | – | |
| SMART | 559 | 691 | 133 | 1.70E-32 | ||
| ProSiteProfiles | 560 | 695 | 136 | 41.158 | ||
| Pfam | 561 | 691 | 131 | 1.10E-20 | ||
| CDD | 562 | 695 | 134 | 7.98E-30 | – | |
| PANTHER | 649 | 702 | 54 | 0 | – | |
| PANTHER | 649 | 702 | 54 | 0 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphorelay sensor kinase activity | Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. | ||
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Biological process | Phosphorylation | The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. | ||
| Molecular function | Transferase activity, transferring phosphorus-containing groups | Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). |
Expression pattern of Lj4g3v3113820.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v3113820.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.