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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2066940 |
| Transcript ID | Lj6g3v2066940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Katanin p80 WD40-containing subunit B1 [Medicago truncatula] gi|357446405|ref|XP_003593480.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 610 | 610 | 0 | – | |
| PANTHER | 1 | 610 | 610 | 0 | – | |
| Hamap | 2 | 836 | 835 | 17.063 | ||
| CDD | 3 | 253 | 251 | 8.51E-66 | – | |
| SMART | 4 | 44 | 41 | 0.012 | ||
| SUPERFAMILY | 8 | 293 | 286 | 6.87E-70 | ||
| Gene3D | 8 | 295 | 288 | 1.10E-75 | ||
| Pfam | 9 | 43 | 35 | 0.037 | ||
| ProSiteProfiles | 11 | 248 | 238 | 58.266 | ||
| ProSiteProfiles | 11 | 53 | 43 | 9.64 | ||
| SMART | 47 | 86 | 40 | 1.50E-06 | ||
| Pfam | 49 | 86 | 38 | 3.70E-05 | ||
| ProSiteProfiles | 54 | 95 | 42 | 15.187 | ||
| SMART | 89 | 128 | 40 | 5.20E-09 | ||
| Pfam | 90 | 128 | 39 | 7.80E-07 | ||
| ProSiteProfiles | 96 | 137 | 42 | 14.92 | ||
| PRINTS | 115 | 129 | 15 | 3.10E-07 | ||
| SMART | 131 | 170 | 40 | 2.00E-11 | ||
| Pfam | 134 | 170 | 37 | 5.50E-10 | ||
| ProSiteProfiles | 138 | 179 | 42 | 17.627 | ||
| ProSitePatterns | 157 | 171 | 15 | – | ||
| PRINTS | 157 | 171 | 15 | 3.10E-07 | ||
| SMART | 173 | 212 | 40 | 7.50E-08 | ||
| Pfam | 174 | 212 | 39 | 1.10E-05 | ||
| ProSiteProfiles | 180 | 221 | 42 | 14.619 | ||
| ProSitePatterns | 199 | 213 | 15 | – | ||
| PRINTS | 199 | 213 | 15 | 3.10E-07 | ||
| SMART | 215 | 253 | 39 | 0.011 | ||
| Pfam | 228 | 248 | 21 | 0.13 | ||
| MobiDBLite | 606 | 628 | 23 | – | – | |
| PANTHER | 655 | 696 | 42 | 0 | – | |
| PANTHER | 655 | 696 | 42 | 0 | – | |
| MobiDBLite | 656 | 786 | 131 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. | ||
| Cellular component | Katanin complex | A complex possessing an activity that couples ATP hydrolysis to the severing of microtubules; usually a heterodimer comprising a catalytic subunit (often 60kDa) and a regulatory subunit (often 80 kDa). | ||
| Biological process | Microtubule severing | The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends |
Expression pattern of Lj6g3v2066940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2066940.1, powered by CORGI.
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