Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0246200 |
Transcript ID | LotjaGi1g1v0246200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | senescence-associated family protein, putative (DUF581); TAIR: AT1G78020.1 senescence-associated family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3SKN3|I3SKN3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0246200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:59019499..59025084) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTCGTTAATGATGAACATCACACTCATTGATAACAAAATCAACGGCTGAGATTCACTCCTCAGTTTCAGGCTCTTG TTTTATCTTCCCAATGCTTCGCCGTTTTCTTCTGCACCTACCTGTAACCTGCTCCCACTCTCTCTCAAACCCTCCTTCTT CAATCACCACCATGCTAACTTAACACTCCACGCTCAAAATCATAGAGCAAAAAAACCAGAAATCTTCAACTTTTTTGTAG CAGAGTTGAAGCAAGCTAGAGTAGAGTGAAGGTTGAAGAACATGATGTTAGGGAAGAGACCTCGTCCTCCGATGAAGAGA ACCACCAGCATGTCGGAGATAACCTTCGATCTGAACACGGCGCCGGAAGATGGTGGTGCTACCGGCAACCGGCACGGAGG AGCTGCTGGTTTTAACGGTTCAGATCAGAGCAGGATTTTGGCCACGGTTTCGCCCAGAAATCACAGAACGCATTCTGTGG ATTTTGCTCAAACCCCTGATTTCTTGCGTTGTTGCTTCCTCTGTAAACGCCGTTTGGCTCCTGGCCGTGACATCTACATG TACAGGTAGTTACTTATCCCCAGATCACTTTTTCAGTTTCAGAATCTGGTGTTTCGATTTCACTTTTGTCTGTTTGGTAC TTTGGTTGTGTGGTGTGTTTATGTTCATAATCACTTTTGGACAAGTTATAAAGTTTTTTATTTTTTATAAGCAAAAATTG GATTTAAGGATGTTTCAGACAAGTGCCTGTTTGGATTTCGTTGAACTCAACATGAACTAATCTTACTTTTCTGATAACTT GTCACATTTGAACTTTGCGCGAATGTCAAATCAAATATGCATACGGTGAAGTCAAAATCATAGTGAATGAAAAATTTCCT TAGATTTTTTTTTGTGACCGTACATCATAATTTTGGTTTTTAAGCTTATCACTAACTTCTAGCGCTGTTCATTAGACTCC CCAGAAATCCAATCAATCTTACACTATTATCTGGACACATAATTATAGTGTATAAATCATATACAAGCCACCAATAACAC GTTTGGGATGAGCTTCTCTGCTGTTAAAATTAATTTTGGAACTCAGAAAATGAAGCTCTCCCTAAAAATGATATTTAGCT AAAAAATAAGCAACTGAAATTCTATGATGGAACAGGTTAAAAATCTGGTCAGTGGTCACCCATAAACTACATATGTTTTT ACTTTAATTTTTTTTAAGGGACAAAACCCAAAATCAAGTATTTTCAAACATTCCTTTTCAAAAAAAAAGGTATTTTCAAA CATTCATCAAACTTTTGCATTTTATATTTCCAATTCAAAATCTCTGCTAATTGGAAAACAATGAAAAATTGCAGGGGTGA TAGTGCATTTTGCAGTCTAGAGTGCCGTCAGCAGCAGATGAACCAAGATGAGAGAAAGGATAAGTGTTGTGTGGCATCAA AGAAACAAGTTGTGGCTACTGCTGGGTCTCAAGTCACCAGTACCAAAGGGGAAACTGTGGTTGCCACAAAGTCGTAGCAT TCCCCAACAAGGATTAATACTAATGATGCAGTATTATTATTAATTCCTAGCTATGTCGTCTAGCTATGCCTATGCTCTTT CATATAATTAATTAATTAAGGTTAATTCTGTGGTGCCCAGAATTTTTTTGGGTGTGGTACTCCATGTGATATCTTAAGTT ATAATTTTGTTGAAAAAAGGTGAAATGAATTATTATTGCAATTTTAAAAAGGTTAATAATCAACTTAAAGAATTAATAAC ATAGACTTTTAAAGTTTGTTTATGTTATATAATACACAATATGAAAATTACGGTTTAGTTCAACTTGTAATTCTGAGAGA TCATCTAAATTCCTTTTATGTCAGGATCTTCTTCCTTCATGCTCCACCCATATTAAACATCTAAATCTTCCTCCATCCTC TTCCTCTAAGTTTGAATTGTATGTTTTCTATTGCTCTATATCATTTTAGGGTACCACACCTTGATCTGGATTAAGGTACC ATAGCAAGCACCATTAATTAATGTGTTGATATAAATACATAGCCCATCACTCCCCTCTCCATCTACCTGATTTGGATCTC TTTTTTGCCTTTTGTTCTGGCTTTGTAATTTTTCATATCATGGCTTTTTATGGAGAGTGGTCTTTTTGCTTGTTAATGGG CAACATGGGCATGTGTTTCTGAAGTGCACGCTAGCTATAGTAATTTCCATGGGATTTTGAACAAATATTATAACTCATAG TAATTAGCCCTCTTCTTGTTATCCACAAGGGTAGCTTAATTGCAACACAGATCCGAGTGTGTGCATAGAACTCTCGGGTT TGATCCCCGCACATTACACTAGAATTTGAAATTGGCTGCATCCAGGGGCGGACCCACATAGTGTTGAGGGGGTTCAACTG ACCCCCCTGAAAAAAAAAAAAATTCCTACCTACCCCCCTATAATAAATTTTTTTTGACCCCTTTGAAATTTTAAAATTGC ACCCAGCCACCCTGACCCCACTACTCACTCACACTCCTTTCTCTCTCTCTCTCTCTCAGTCTCTCACGCTCACGCACTCA CCCTCTCTCAAACTCTCACGCACAGACGCACTCATTCACACAGCACCACCACCACCGGCTGCCGCACCGCCACGGCACGA CACCACCGGCCACCACCACGGCACCACTGGCGCCACCGTCCATCTTTGCAAGCTGTTGAAGGTTAGTACTTAGTTAGGTT TAGGTTTGGAAAACCCCAAAATTGAAAACCCCAAAATTGAAAACCCAAAAATTGAAAATCCCTTGATATATTTGCAAGCT GTGGAATTTATCCTCTAATTTCTGATTGTCAACCTTCACGTTTTACAGACTTGCTCCTTTTGTTTTAAAGGTTAGTTTCC TTCCCATGGACTTATTTGGCACAACTCCTTTGTATCAGAGGGATTATTTCAATGCAACATTGATGTTCTTTGCAATTGGT TTCTCAGATATTAACTTAAGAGATGTGTGATACAATCATCCAAGTGATTTAACTATAGTATAAAATGTAACAAATCAGTA TTCAGAATTTTTTAACTCTCTTTGTAGTTAAAATATATGCTTGTTGTCAAAACTGAAAGGAATTTTGTGTTAAGTATCCG TCCATCTTTGCAAGCTGTCGAACTAATTTAAGTCTACTCTATCTTGTGAAGGTCATGGATAAATTTTTAGTAAAAAGAGC AAGGTCATCAAGTGAGCAATGTGGATCAAGCTCGTCACAACAACAACCACCACATGTTGAAGTTAATCTAAATGAGTTGC CATCGGATCCTGGATTGCGACCAAGAATTACAACATATCATCCTAATGATCAAGATAAGATACGGAGAGCATATTTGCAA AAAGGACCATGTCAACCTAAGAATCACAACTTTCCACAAAAGAAAGTCGGAACCTCAAAAAGAAGATTTTCCACGGCATG GTTCACTGAATTTGGAAGTTGGTTAGAGTACAGCATTGAAAAAGATGCTGCATATTGTTTGTGTTGCTATCTCTTTAGGC CCGATCAAGGAAACCAAGGTGGTGGTGAGACATTTGTCACCAAGGGATTCAACAAATGGAACAACAAAGAAAGGATCACA CTTCATGTTGGAAGTCCTAATAGTGCTCATAACATTGCTTTCAAGAAATGTCAGGACTTAATGAAACAAGATCAACATAT TGACACTGTCATGTCTAGGCATTCTGACACACAACGCAACATCTACAGAACACGCTTAAAGGCAACAATTGATTGTGTTT GTTGGCTACTAAAGCAAGGCTTAGCTTTTCGTGGTCATGATGAGTCAAAGGGTTCTACCAGACAAGGTAACTTCCTTGAG CTACTTAAATTTCTTGCCATGCACAATGATTTGATAAAAAGTGTTGTTTTGGATAATGCTCCTGAAAACCATCAATTAAT TGCTCCAACAATCCAAAAAGATATTGCTCATGCTGCTGCATCAGAAACTACTAATGCTATTATTGCTGATATTGGAAATG AATTCTTTGCTATTCTTGTTGATGAAGCTCGTGACATATCAACTAAAGAACAAATGGCAATTGCTCTGCTTTATGTTAAT AAAACTGGAAGTATTGTTGAGCGTTTTTTAGGCATTGTTCATGTTAAGGATACCACTGCTTCATCATTGAAATCAGCAAT TGATGAACTATTTTGTAAACATGGGCTTAGTATATCAAGTATCCGTGGACAAGGTTATGATGGTGCTAGCAACATGAGTG GAGAATTTAATGGTCTGAAAAGTTTAATTTTAAGGGAGAATCCATGTGCATATTATGTCCATTGCTTTGCTCATCAATTA CAACTTACTTTAGTTGCTATTGCTCAAGAACATGGTGAAGTTTCCTTATTTTTTAACTTAGTCTCCAAGTTAATGAATGT TGTTGGGGGATCTTGCAAGCGAGTTGACATGCTTCATGAAAAACAATTGGAACATATTAGAGAAGAATTAAGCAGAGGAG AAATTTCTAGTGGGCAAGGTCTTAACCAAGAAACTAATCTGGCACGCCCTGCTGATACTCGTTGGAGTTCTCATTATGTC ACTTTGGTTAGGATAATATTGATGTATTCTGCTATTATTGATGTTCTGCACATTATGAAAGAAGACGGATACCCCCGACA GGCAAAAGGTGAAGCATCTGGTCTTTTAATTATGTTGCAAGGTTTTGATTTTGTATTCTTCTTGCATTTGATGAGACGTG TATTGGGTATTTCACATGAATTGTCACAATCATTGCAAAGGAAAGATCAAGACATCATGAGTGCTATGAACTTGGTTAAC ATCACAAAGACTAGGTTTGCATCACTTAGGAATGATGGATGGGAGCCTTTATTGAAGGAAGTCACTTTATTTTGCAATAA GCAATCTATTAGTGTTCCTCCTATGGAAAGTGTGTTTGTTAGTGGGCAGTCACGGCGTCAAACGCGTAGCATTACAACAG AGCATCATTATCGTGTTGAGTTATTTTATACCGTGATAGATATGCAGCTTCAAGAACTCAATGACCGTTTTAGTGAGATT AATACCCAATTGCTCCTTTGTTTGGCTTCTTTGGATCCATCTAATTTGTTCTCTGCTTTTGATAAGGCAAAGGTGTTGGA ATTTGCAAGTTTTTATCCAAATGAGTTCACTCCATTTAATTTAGTGATGCTTGATAATGCACTAGAATGTTACATCATGG ATATGCGAACAAGTGATGAATTTGCCTCTTTGGAAGGACTCCAACAACTTTCAGAGAAGTTGGTTGAAAAAGGAAGACAT GTTGTGTATCCACTTGTTTATCTTCTTTTGAAATTGGCACTGATTTTGCCTGTTGCAACAGCCACTGTAGAAAGAGCTTT CTCTGCTATGAATATTGTGAAGAATAGGCTGCGTAACCGAATTGGAGATACATGGATGAATGATTGTTTAGTTACTTATA TTGAGAGTGATGTATTTAATAACATTGACTCTGAGCTTATTGTTCAACGATTTCAGAATATGAAATCGCGTAGAGGACAA CTATGATTTGTATAATTTCTTATGTATAAACATATTACAGTTGTTTTTAATTATTTTTTATCGATG
CDS sequence (LotjaGi1g1v0246200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTAGGGAAGAGACCTCGTCCTCCGATGAAGAGAACCACCAGCATGTCGGAGATAACCTTCGATCTGAACACGGC GCCGGAAGATGGTGGTGCTACCGGCAACCGGCACGGAGGAGCTGCTGGTTTTAACGGTTCAGATCAGAGCAGGATTTTGG CCACGGTTTCGCCCAGAAATCACAGAACGCATTCTGTGGATTTTGCTCAAACCCCTGATTTCTTGCGTTGTTGCTTCCTC TGTAAACGCCGTTTGGCTCCTGGCCGTGACATCTACATGTACAGGGGTGATAGTGCATTTTGCAGTCTAGAGTGCCGTCA GCAGCAGATGAACCAAGATGAGAGAAAGGATAAGTGTTGTGTGGCATCAAAGAAACAAGTTGTGGCTACTGCTGGGTCTC AAGTCACCAGTACCAAAGGGGAAACTGTGGTTGCCACAAAGTCGTAG
Protein sequence (LotjaGi1g1v0246200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLGKRPRPPMKRTTSMSEITFDLNTAPEDGGATGNRHGGAAGFNGSDQSRILATVSPRNHRTHSVDFAQTPDFLRCCFL CKRRLAPGRDIYMYRGDSAFCSLECRQQQMNQDERKDKCCVASKKQVVATAGSQVTSTKGETVVATKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 145 | 145 | 6.6E-58 | – | |
PANTHER | 1 | 145 | 145 | 6.6E-58 | – | |
SignalP_GRAM_POSITIVE | 1 | 10 | 10 | - | – | |
MobiDBLite | 24 | 47 | 24 | - | – | |
Pfam | 68 | 116 | 49 | 6.3E-26 | ||
ProSiteProfiles | 73 | 117 | 45 | 26.558 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0246200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…