Transcript — View — Lotus Base

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LotjaGi1g1v0257100.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0257100
Transcript ID	LotjaGi1g1v0257100.1
Lotus japonicus genome version	Gifu v1.2
Description	Nodulation signaling pathway 2; TAIR: AT4G08250.1 GRAS family transcription factor; Swiss-Prot: sp\|Q5NE24\|NSP2_MEDTR Nodulation-signaling pathway 2 protein; TrEMBL-Plants: tr\|Q2PEG7\|Q2PEG7_LOTJA Nodulation signaling pathway 2; Found in the gene: LotjaGi1g1v0257100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:62282020..62284595) extracted from Lotus japonicus Gifu genome v1.2.

CAGGTAGGCAGTCATGTAAGTCTCATAGCCCACATAACTCCATATTTTATATAATGACCAACCAGTTATTTTGGACTTCC ATTGTCTCATGCTTCGAACTCTTCCTCGATCTCTTTCGACTCTCAACCCCTTTATAAGCCTCCCTCTTACCCTTCTCCCT TCTCACACAAAAAGGATATATTCTTCTAAGCTATCACTTCTTTTGAATACACCCACAGTTACGTTATTTTCTCTCTTCTT TTGATGATTTTACTCAACTCAACAACCTCAGGCATGGAAATGGATATAGATTGCATCCATCACCTCGACTTCTCCGGACA CAGCACCCTCACCAACACCCCATCTTCCGACAACGATAACTACGGATGCAGCTGGAACCACTGGTCCCCTGTCGTCAACT GGGACGCCTTCACCGGCAACCAGGACGACTTCCACCACCTCATCGACTCCATGATTGACGACAACAACACTGGCCCCGCG TTTTCAGACCACACCGCATCCACCACCTCGGAGGAGGAAGAAGAAGAAGAAGCAACCACAACAACAATGACCACAACCAC GACAACAACAACCACCACGCCAGAAGCGGCAGACGACGACTTTAAGGGCCTGAGGCTGGTGCACCTGCTGATGGCCGGCG CGGAGGCCCTCACCGGCGCAAACAAGAACCGCGAACTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCAC ACCGACGGTACAAACATGGAGAGGCTTGCTGCGTATTTTACCGAAGCGCTGCAAGGCCTGCTAGAAGGCGCCGGGGGAGC GTACAATAGCAGCAGCAAGCACCACGTCATCGGAGGACCCCACCACGAACCCCAAAATGATGCTCTTGCTGCTTTCCAAT TGCTTCAAGACATGTCCCCTTACGTCAAGTTCGGCCACTTCACGGCCAACCAGGCCATTGTCGAGGCCGTGGCCCACGAA CGCCGGGTCCACATCGTCGACTACGACATCATGGAAGGGGTCCAATGGGCCTCACTAATGCAGGCCTTGGCCTCCAATCC CAACGGCCCTCACCTACGCATCACCGCGTTGTCTCGATCCGGCGTGGGTCGGAGGTCAATGGCCACCGTGCAGGAGACCG GAAGAAGGTTAACCGCCTTCGCGACCTCCCTGGGGCAACCCTTCTCATTCCACCACTCCAGACTTGAGTCCGACGAGACC TTTCGGCCCGCCGGGCTCAAGCTTGTGCGTGGAGAGGCCTTAGTGTTCAACTGCATGTTAAATTTGCCGCACCTTACTTA TCGCTCGCCTAATTCAGTTGCTTCGTTTCTAACTGCGGCCAAGGCGTTAAGGCCGAGGCTGGTGACGGTGGTGGAGGAGG AGGTGGGGTCCGCTCTCGGCGGGTTCGTGGAGCGGTTCATGGACTCGCTACACCACTTCTCCGCCGTGTTTGATTCATTG GAGGCTGGGTTTCCCATGCAAGGTCGGGCCAGGGCTTTGGTAGAACGCGTCTTCCTTGGGCCGAGGATCGTGGGCTCGTT GGCCCGGATCTACAGAACCGGTGGAGGAGGGGAGGAGAGAGGGTCCTGGAGGGAGTGGTTGCGTGCGGCAGGGTTCAGCG GAGTTGCCGTGAGCTCCGCCAATCATTGCCAATCGAACTTGTTGCTGGGTCTTTTCAATGACGGGTACAGGGTGGAGGAG CTGGGTAGTAATAAGTTGGTGTTGCATTGGAAAACCAGGCGTTTGCTTTCTGCATCCCTTTGGACTTGTTCTTCAGAATC AGATTGTGCATAGCTGTTAAATCGCTTCAGATCTCAATGTGCTTTTCTAATTGCTTTTAATGTTCATGTTGACCTTCCGA AAACAGAAGAAAAAAGAGTCAAAAACCATATGACATTTTCCTCTTATGGTATTATTAGGAATTAGGATCTTTGCTAACCT CCACGGTGACTTTAATTAGAACATGGGAAAATCCTAACACATACTATCATTCTTAGTGACTTTTTTCTTTCGTGTGATTA CTTACTTGGAGGATGATGAAATGAAAAACTTTACTCAATTATAAACATATCAGTAAGATCACTTTTCATGCACAATTTTA CGTCCATGAATATTGTCATGACACCTCAATAAGAATATTGTTTTCATCCCATGGAAATGGAGGATGAAAGAGAGGGATGT GAAGAAAAGATAGAAGAAATAAAGATATAATAAGTGATTTGATTGGAAAAAAAAAGATAAATAAATAGAAAATAACTGTG AAAAATAAGTGGAGGTGTGAAAGAATCATAACTCCAAAATAAATATGGAAAACTATCTTTAATTAGAACGATGATGGTTG TACCATTAAAATAAATGGTTGAGTTAGCATCACAATTTACGTTTTATAGCGATCCAATGTTAATTTTAACTCATTAACAT CGATCAAACCGACCGACTCAAAACCGATGCTAACGTACAAAATTTAAATTTGCTCCACCAAATAATAGATGACTAGTGTC TCCCATAGCCATTAACATTAGTTTGATCGATGATAAAAGTCATCAGTCAAATTAGCGCAGGCGATGCTAACTTGAAATGG ACTCGAGTCATTTAAC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0257100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTTTACTCAACTCAACAACCTCAGGCATGGAAATGGATATAGATTGCATCCATCACCTCGACTTCTCCGGACACAG CACCCTCACCAACACCCCATCTTCCGACAACGATAACTACGGATGCAGCTGGAACCACTGGTCCCCTGTCGTCAACTGGG ACGCCTTCACCGGCAACCAGGACGACTTCCACCACCTCATCGACTCCATGATTGACGACAACAACACTGGCCCCGCGTTT TCAGACCACACCGCATCCACCACCTCGGAGGAGGAAGAAGAAGAAGAAGCAACCACAACAACAATGACCACAACCACGAC AACAACAACCACCACGCCAGAAGCGGCAGACGACGACTTTAAGGGCCTGAGGCTGGTGCACCTGCTGATGGCCGGCGCGG AGGCCCTCACCGGCGCAAACAAGAACCGCGAACTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCACACC GACGGTACAAACATGGAGAGGCTTGCTGCGTATTTTACCGAAGCGCTGCAAGGCCTGCTAGAAGGCGCCGGGGGAGCGTA CAATAGCAGCAGCAAGCACCACGTCATCGGAGGACCCCACCACGAACCCCAAAATGATGCTCTTGCTGCTTTCCAATTGC TTCAAGACATGTCCCCTTACGTCAAGTTCGGCCACTTCACGGCCAACCAGGCCATTGTCGAGGCCGTGGCCCACGAACGC CGGGTCCACATCGTCGACTACGACATCATGGAAGGGGTCCAATGGGCCTCACTAATGCAGGCCTTGGCCTCCAATCCCAA CGGCCCTCACCTACGCATCACCGCGTTGTCTCGATCCGGCGTGGGTCGGAGGTCAATGGCCACCGTGCAGGAGACCGGAA GAAGGTTAACCGCCTTCGCGACCTCCCTGGGGCAACCCTTCTCATTCCACCACTCCAGACTTGAGTCCGACGAGACCTTT CGGCCCGCCGGGCTCAAGCTTGTGCGTGGAGAGGCCTTAGTGTTCAACTGCATGTTAAATTTGCCGCACCTTACTTATCG CTCGCCTAATTCAGTTGCTTCGTTTCTAACTGCGGCCAAGGCGTTAAGGCCGAGGCTGGTGACGGTGGTGGAGGAGGAGG TGGGGTCCGCTCTCGGCGGGTTCGTGGAGCGGTTCATGGACTCGCTACACCACTTCTCCGCCGTGTTTGATTCATTGGAG GCTGGGTTTCCCATGCAAGGTCGGGCCAGGGCTTTGGTAGAACGCGTCTTCCTTGGGCCGAGGATCGTGGGCTCGTTGGC CCGGATCTACAGAACCGGTGGAGGAGGGGAGGAGAGAGGGTCCTGGAGGGAGTGGTTGCGTGCGGCAGGGTTCAGCGGAG TTGCCGTGAGCTCCGCCAATCATTGCCAATCGAACTTGTTGCTGGGTCTTTTCAATGACGGGTACAGGGTGGAGGAGCTG GGTAGTAATAAGTTGGTGTTGCATTGGAAAACCAGGCGTTTGCTTTCTGCATCCCTTTGGACTTGTTCTTCAGAATCAGA TTGTGCATAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0257100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MILLNSTTSGMEMDIDCIHHLDFSGHSTLTNTPSSDNDNYGCSWNHWSPVVNWDAFTGNQDDFHHLIDSMIDDNNTGPAF SDHTASTTSEEEEEEEATTTTMTTTTTTTTTTPEAADDDFKGLRLVHLLMAGAEALTGANKNRELARVILVRLKELVSHT DGTNMERLAAYFTEALQGLLEGAGGAYNSSSKHHVIGGPHHEPQNDALAAFQLLQDMSPYVKFGHFTANQAIVEAVAHER RVHIVDYDIMEGVQWASLMQALASNPNGPHLRITALSRSGVGRRSMATVQETGRRLTAFATSLGQPFSFHHSRLESDETF RPAGLKLVRGEALVFNCMLNLPHLTYRSPNSVASFLTAAKALRPRLVTVVEEEVGSALGGFVERFMDSLHHFSAVFDSLE AGFPMQGRARALVERVFLGPRIVGSLARIYRTGGGGEERGSWREWLRAAGFSGVAVSSANHCQSNLLLGLFNDGYRVEEL GSNKLVLHWKTRRLLSASLWTCSSESDCA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31636 View details on PTHR31636 Search for proteins/transripts with this domain View external data on PTHR31636	21	501	481	9.4E-187	–
PANTHER	PTHR31636:SF25 View details on PTHR31636:SF25 Search for proteins/transripts with this domain View external data on PTHR31636:SF25	21	501	481	9.4E-187	IPR030028 Show description in modal box View details on IPR030028 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	74	116	43	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	99	115	17	-	–
ProSiteProfiles	PS50985 View details on PS50985 Search for proteins/transripts with this domain View external data on PS50985	116	501	386	80.123	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03514 View details on PF03514 Search for proteins/transripts with this domain View external data on PF03514	125	501	377	1.9E-100	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0257100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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