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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0360500 |
| Transcript ID | LotjaGi1g1v0360500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-like protein; TAIR: AT1G27840.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q13216|ERCC8_HUMAN DNA excision repair protein ERCC-8; TrEMBL-Plants: tr|I1K866|I1K866_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0360500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83540885..83546486) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTATGAACCATTAGAGACCATAGTGAATCAATCGATTGAGCCGAATGTGAAAGTTTCATTGGGCCGCTTATCGAGT CCGTTGACTTTTTTTGCACAAATCTCTTTAAAACAAAAACCAGAGAAGTAAAGAAAAGCAAAAGAGGGGCAGAAATAGCA GTAGAGGAGAAGAAGATGAACTAGTGTTGCGAATGTGGAAGCAAATCAGAGACAGAGAATCAGGCAAATTGCGACCTAAC CATTTCACCAATCGCGTTTCCTCCAATCGCGTTTCTCATCTCCAATTATCCAATCACAAAGACCTCATCTCCCCTCACAA AGGCGCAATCAACTCCCTTCAGGTAACGCACGCGTGCTTTCTTCCTCACCTCACTCTCCTCGTTTCTTCATTCAAACCCT CCTCCCAATTTGACCGTGAATTCAGATTGATTTGACAGAAGGAAGATACTTGTTGTCTGCTGCTTCCGATGCATCTGTGG CGGTTTACGACGTTCAACGCCCTAGCGAGTATGAAGCCGGTGGTGCCATAGCGAAGCACAGGTGTATATTTGTTATTGAT AAACAGCATCAATTGGCTCATAAGTATGCGGTGTCTTCTGCTATTTGGTATCCCATTGATACTGGCTTGTTCGTCACTGG CTCATATGATCATCATGTTAATGTTTGGGACACTAACACCACCCAGGTTATCATCATCATCATCATTGTAATTGGTTTAT TCACATGCTGTTGATTCTCTATTTCTAAATTTAGTTTTCTTGTTGTTGTGTTATACTGCAGGTGGTGGTGAATTTCAAAA TGCCTGGAAAGGTTTATAGGACTGCCATGTCCACTTTGTCAACATCTCACATGCTTATTGCTTCTGCAACTGAGGATGTT CAGGTTCGCCTTTGTGACATTGCTACCGGGGCGTTTACTCACACTTTGTCTGGTCATCGTGGTATGTCACTACTTTTAAA CCTTTTTTGTTTTGTTTTTCTGTGTCTATCATGTCATTTTCATGTGTATGTTCGATTTTTGCGGTCTTCTCGATCGATTG CTGCTATGTAATTTGAGTTGTATGTCTATTTGGCAAGAGCCATCACATCACTAGTTAGTGCTTCTATGAGGAAGTGTTGA AATATATTGTCTGCAGTGCTGAATGAAAACAGAGTTAGGGAGAATAGTTTATTTATCGAATTCATTATACTTCCTTAAGC CTCTGACTGACTAACAAGATTAAGAGTTAAGACTAATTATAACTAACAACAACTAACTGAGCTATGAAAAACTAACGGAG CTTGTTAGTATCGGTAACTATAAATGTGTAACTAACTAACTAAAGAGAATTCCCCTAGTAAAAAAGTAAAAACAATAACC AGATATGGATCTCTGAGTGTCAATACATTCTCCCCAATCTATGTTGGAAAAACCTCGCAACTCAATGAAGGGTTCCTGGC AAATAACTATCCAGAACCCGGTGAGTTGTTTCAATATTTTTTGACCCTAATGGCTTCCCTATGGTGAGTTAAGGGCGCTT CTTGCCTTCTGCATTTATCAGGACCTGTGAATCATCATAAACATCATGACTAATTTGCCAACACTGAAACCCTCATTCCC AATAGAAGGTGGATTCTGTAATCTTGCTCCTTGAACATCTTCACATTCTGAATTGCATCACATCTACAATGGCACAGGGA ACTTGCGCTGATAGTGCTCCAGCTCTTATAGAACTTTGAATTGTTTAAAGTAGTCAATAAGTAACAAAGAACCTTGCTTG AACTCATTGGTTTCTTACTGTAATTCAGAAACCCGCGCAAGATCTTCCTGTGGGAACCTCTCCTTGAGATCTGTCCATCC ATCACAAGCATTCTCAATATACTCTACTCTGAGCTATAGAAGAAGTCACCGAGTTAAGAATCTATGATAATATATCAATT GTTGCACTGTTCCCAAGCATCGTGATTTAGATCCGGAGGCGACAGAGTTGGAGTGCCGCCGCTGGGAAGATGGGATTTGT TCTTCGAGGTCAAGGGCCAATTCATCACTCAAGCCCCAATAATGGTGTTTTTTCTCGGTGAGCAAAGGATTTTCACCTGA ATGGATATAGTATGGGCTCAGTGGATTATGGGTAGGATCTGCAATCACCATGCTCGTCGAGCTTCCTTGCATATTGGAAC TCTGATAATTCAAACTTCTGACCATTTTTGGTAGCAGAAAGTGATGGCAGAGCCTTAATCAGGGCTCTGATACCATCTTA GGTAAGTGAACAGATTGAAAACAGAGCGAGATCATATTTATTGTACTTTCTTAACTGATTAATACAACCAGCTGGTGACT TATATAGGAAAGTTACTCTGCTATATAATAGACATGTATCATGGCTTTAACTGAATAATAGAATTAAAACTCACTATAGC CTTTTTTTTATAGGCAAATGTTAGTTGTTAGTAAATTAGTCCCATTAACTAACTGAGCTACCAGCAACTAGCTGAACAAC CAGCAACTGACTGAGCTCACATTAACTAACTAACTGATATTATCCTCTAATAATGATTTAACATGTAATTTCTGTGAAGG CAGATGGAGTAATGTCTGTTGAATGGTCGGCTTCAAGTGAATGGGTCTTAATTACTGGGGGATTGGACGGTGCAATACGT TTCTGGGATATCAGGCGTGCTGGGTGTTTCCAAGTTCTAGATCAATCTCGGACTCAGCTTGGAAGACGTCCATCTATACT CAAACACTCCATGATAACGAAGGTTTTTTTTCTTTCTCTTTTATGTTTTTTTTTTTTAGTTTGGCCGTGAATAGTGAGTC TAAGTGCATGATTGGATACACGGTGGAAAACCACGGTGGACAGAAGCAACTCCTCTTAGCCTTTTGGGGCTATCCACTGT CATTTTGGCTTCACCATGGTTCTCCGCCATGTATCCTAACATGCTAAATAATGGAACTCATGACCGTTTTATTCATGTAG CTGAAATTGTACCAAGTATTATAGAATTTGTGCTTGTTATAATCCTAAAGTCTTACCACTCACAGGATTCAAGCACCAAA AATCGTGCTGTGCAGAAGAAACATGCTAATGGAAGTGGTAGCAGACAACCGCCAATTGGTAGAGTTCCATCTAGGGGACC AATGAAGCAGAGATTACATCCAGGAATGCTGTCCACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGGTTAA AAGTAACAGAGGATGGCATGTATCTCTTAAGTGCAGGTTGTTTTTTTTATTAGTACAAGTTATAAGAATAAAAATTATGT ATGCAATAGTAATTTCTTATGAGACTCTAGATCAAACTCCTTATCTGTTTCCTTATAATGCATCAAAACACAGTTCATAT CCAAATTCTTACCCTCTCCCTAATTGGTGTGCTGTTGGATCACAGGGTCTGATTCAAGATTGAGGTTGTGGGATGTGGAA TCTGGCTGTGATACACTTGTGAACTTCGAAACTGTCCGCTTGCAAACAAACAAACCTATTCAATTAGCCACGACTCAAGA CTCAACCCCTGTTTTCGTTCCCTGCATGAGAGCTGTGAAAGTACATCTTTCTTTTAGTTTATTATATATTTTAATTTTAA CTTTTGACTAGATGTACAAATACAATGAGAGGAATACTGACCTCACTTATGGATTAATCAGGCATTTGATATGTGGTCTG GGAATGCGCACACAATACTACGTGGCCACTATGAATGTGTGAACTCGTGCTGGTTTAATCAACAAGATCAGGTACGTTCA AGAGGTGGTGGTTTATTTTCTTTCCCTACTCCTCCCTTGTCAGTGGTTAACCAAATTCTTGTGTTGATGTTGAAATCCAT TAGGCTTGTCAGGTCTGCATGCTCAGTTTCCAGTTAAACTCTTTTTATAGAGTTATATCATATGAAATATGAATAGACTT TTACCTTTTTCTCTCATTGAAATTTATTCTAAGTTCATAGTATTGCCACTGCACAAATATACATCTAAACTTCTATGAAC ATCTCGCGCAGCATGTGGATGGCCTTTCCTTTTTTTTTTCTTCTTTCCATTTTAACCTCTTCTTATAAATTTCACTCTTA TAAAAAAAAAAAAAAGATAAAAGGCAAAGATTAGAACACGGCGGTTGTAAATTGTGTATATGTGGGATCATCTGTCCTTT TTCTTCTTGGATGTAAGGAGTATTATCTTTAGGAAGAATAGAGATTTTTATGAGGATTTTCTTATATTGACCACTTTTGG ATGGTGTATAAACTTAGATGAAACTAAACTTGATGAACAATGAGGTAAGTCATGCCACCTATGGCTGTACCTTGCTCAGT TGCTCCCCAACTGATTAAACTGAAAATATTCATTGCTGAGGCGGATACTTTCAACACCATTGCTTTTCTGGACTGAAGTC AGTATCTTTTGACCACAATTGAAGGGACCATAAGAAGAATTTTTTCAGTTTGTTATACTTTACATTAATAAATTCATATG ATTAAATAACGGACCGATAGAACAGCTAAGTCCTCGTATATGCTTCTCAATGTACGTGGACATATGGATTATATGATACT ATTCTCATCATTTCTCAAATTCTATTGTATTGAGCTTTGCTTGAAATGTATTGCTTTCTCATAGAACCCAAATTCCTATT TTTTTAACGATTTTCTTTATTGTCACAGGAATTATACACTGGTGGAAATGATAGGCAAATTCTTGTCTGGTCACCTGCTA GATCAATTGCTGATGAAATTGTACATTGTTTGAATCAATCTATTGAGATTATCATGCTTATATGTCATGCTAGAGCACCT TCCACTTTGTTATTGTCTGACCTTGTGTGTTAAACTACAGGAGGAAGGAGCTGCCGAGGATGAGGATACCTGGAGTAGCT AAGTTTTGCCTTTGATTGAATCACATCTTTTCCTTGTTTGGCACCTTTGCCACTTGTGTCAAATGTTTGTGGGATTTGTA AATGAAGGCATGTTCTGGTTTTGGAGAATATATGAAATGCTTAAAGGTGCTGCAGAACTGTATACTAGTAGCTCATTGCT TTTGTATATAGTTTTTTTTCCTTTATATTTTATATTTAATCAGTGTATAAATGTTGAATTGATCTCTGTCCTGTTAGTTA TAGCATAAACACTTCTTTAGGAATGCTTTGCTATATCAGGTTGTATATATATGTGCGGACTCGAATGCAATGGTAATTTA CCTTTCAGTTTCAGGTTTATACTTTATCAGAAAAGAAAAAAGACACCAAGAATCCAGATAAAAACAATGCCAATAAATTA TATAATTTAATCATACAGGTTATACTTTTACAAAGATTGATCTTTATTTAGCTTGACGTGCTGGCTCACTGAGTACTTAT TTTTCCTTCTGCAAGCATCACGAATATGTTGGCCATGACCAGTTGATCATTATTTAATTTGAATTAAGTGAGCATGGCTG CCTAAAGGGAAAAAATGGATATTGCACATGTCTCTTGCAGTATTCAGATTATGCCCATATTCAATAGACGAATATTTTTT TTAGGGTTACATATGTTTTTAGTACCTCTAAAATAGGGGAAAACTGAATTGGTAGGTGATCCTTCAATTTGTTCAAAAAT AG
CDS sequence (LotjaGi1g1v0360500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAAGCAAATCAGAGACAGAGAATCAGGCAAATTGCGACCTAACCATTTCACCAATCGCGTTTCCTCCAATCGCGT TTCTCATCTCCAATTATCCAATCACAAAGACCTCATCTCCCCTCACAAAGGCGCAATCAACTCCCTTCAGATTGATTTGA CAGAAGGAAGATACTTGTTGTCTGCTGCTTCCGATGCATCTGTGGCGGTTTACGACGTTCAACGCCCTAGCGAGTATGAA GCCGGTGGTGCCATAGCGAAGCACAGGTGTATATTTGTTATTGATAAACAGCATCAATTGGCTCATAAGTATGCGGTGTC TTCTGCTATTTGGTATCCCATTGATACTGGCTTGTTCGTCACTGGCTCATATGATCATCATGTTAATGTTTGGGACACTA ACACCACCCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTTTATAGGACTGCCATGTCCACTTTGTCAACATCTCAC ATGCTTATTGCTTCTGCAACTGAGGATGTTCAGGTTCGCCTTTGTGACATTGCTACCGGGGCGTTTACTCACACTTTGTC TGGTCATCGTGATGGAGTAATGTCTGTTGAATGGTCGGCTTCAAGTGAATGGGTCTTAATTACTGGGGGATTGGACGGTG CAATACGTTTCTGGGATATCAGGCGTGCTGGGTGTTTCCAAGTTCTAGATCAATCTCGGACTCAGCTTGGAAGACGTCCA TCTATACTCAAACACTCCATGATAACGAAGGATTCAAGCACCAAAAATCGTGCTGTGCAGAAGAAACATGCTAATGGAAG TGGTAGCAGACAACCGCCAATTGGTAGAGTTCCATCTAGGGGACCAATGAAGCAGAGATTACATCCAGGAATGCTGTCCA CTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGTAACAGAGGATGGCATGTATCTCTTAAGTGCA GGGTCTGATTCAAGATTGAGGTTGTGGGATGTGGAATCTGGCTGTGATACACTTGTGAACTTCGAAACTGTCCGCTTGCA AACAAACAAACCTATTCAATTAGCCACGACTCAAGACTCAACCCCTGTTTTCGTTCCCTGCATGAGAGCTGTGAAAGCAT TTGATATGTGGTCTGGGAATGCGCACACAATACTACGTGGCCACTATGAATGTGTGAACTCGTGCTGGTTTAATCAACAA GATCAGGAATTATACACTGGTGGAAATGATAGGCAAATTCTTGTCTGGTCACCTGCTAGATCAATTGCTGATGAAATTGA GGAAGGAGCTGCCGAGGATGAGGATACCTGGAGTAGCTAA
Protein sequence (LotjaGi1g1v0360500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWKQIRDRESGKLRPNHFTNRVSSNRVSHLQLSNHKDLISPHKGAINSLQIDLTEGRYLLSAASDASVAVYDVQRPSEYE AGGAIAKHRCIFVIDKQHQLAHKYAVSSAIWYPIDTGLFVTGSYDHHVNVWDTNTTQVVVNFKMPGKVYRTAMSTLSTSH MLIASATEDVQVRLCDIATGAFTHTLSGHRDGVMSVEWSASSEWVLITGGLDGAIRFWDIRRAGCFQVLDQSRTQLGRRP SILKHSMITKDSSTKNRAVQKKHANGSGSRQPPIGRVPSRGPMKQRLHPGMLSTQDRATAHYGAVTGLKVTEDGMYLLSA GSDSRLRLWDVESGCDTLVNFETVRLQTNKPIQLATTQDSTPVFVPCMRAVKAFDMWSGNAHTILRGHYECVNSCWFNQQ DQELYTGGNDRQILVWSPARSIADEIEEGAAEDEDTWSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 439 | 439 | 1.9E-175 | ||
| Gene3D | 1 | 267 | 267 | 1.4E-65 | ||
| SMART | 32 | 72 | 41 | 0.43 | ||
| SUPERFAMILY | 39 | 419 | 381 | 1.54E-51 | ||
| ProSiteProfiles | 39 | 81 | 43 | 9.172 | ||
| ProSiteProfiles | 39 | 426 | 388 | 23.836 | ||
| SMART | 87 | 132 | 46 | 6.3E-4 | ||
| ProSiteProfiles | 99 | 141 | 43 | 10.375 | ||
| Pfam | 114 | 132 | 19 | 0.081 | ||
| PRINTS | 119 | 133 | 15 | 1.3E-6 | ||
| SMART | 179 | 219 | 41 | 2.1E-8 | ||
| Pfam | 182 | 219 | 38 | 2.8E-7 | ||
| ProSiteProfiles | 186 | 228 | 43 | 13.917 | ||
| ProSitePatterns | 206 | 220 | 15 | - | ||
| PRINTS | 206 | 220 | 15 | 1.3E-6 | ||
| MobiDBLite | 247 | 288 | 42 | - | – | |
| MobiDBLite | 247 | 267 | 21 | - | – | |
| Gene3D | 279 | 420 | 142 | 5.2E-29 | ||
| SMART | 288 | 330 | 43 | 4.0E-4 | ||
| ProSiteProfiles | 298 | 339 | 42 | 14.084 | ||
| Pfam | 299 | 330 | 32 | 0.0016 | ||
| PRINTS | 317 | 331 | 15 | 1.3E-6 | ||
| ProSitePatterns | 317 | 331 | 15 | - | ||
| SMART | 378 | 417 | 40 | 1.1E-4 | ||
| Pfam | 383 | 417 | 35 | 0.0089 | ||
| ProSiteProfiles | 385 | 417 | 33 | 10.575 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Transcription-coupled nucleotide-excision repair | The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway. |
Expression pattern of LotjaGi1g1v0360500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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