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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0343300 |
| Transcript ID | LotjaGi2g1v0343300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CYCLOPS; TAIR: AT2G45910.1 U-box domain-containing protein kinase family protein; Swiss-Prot: sp|Q7Z7A1|CNTRL_HUMAN Centriolin; TrEMBL-Plants: tr|A9XMT3|A9XMT3_LOTJA CYCLOPS; Found in the gene: LotjaGi2g1v0343300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82066213..82072212) extracted from Lotus japonicus Gifu genome v1.2.
CTATAATTTCATGTTTATGAACCAGAATAATGTTGACACATTGCCATGAAGAAAATTCATGGACGTGAGCTGAACGAACA TTTACATTGCAATTGCAGTGTGCTTAGCCAACAATGAAAGCATCTTCTCAACAGCTTCTTAATATTTTAAATCCAAACAC AACCAATGAATGTTCCTCAACATCACCATTATCCAATCAGCACCACCTGTGGCATTTGTTTAATACATTAGAAAAGATGA CCAAGTTGTGATTAATTTAACACAATGATTCCCTTTGCTTCATTCAAAAGTTAAAATCTTTTCTCAGTTTTGAGCCTGCC CATCAAATTTCCACACGGTTTCCAACCGTTGAAAGACTATTTTTACTGCCGCAAAGATTTCTCCTTTCATTCTGCACAAG AGACAAATGAATGGTACATGGAATCTTTGGAGTATTTATTTCACTCTTAGATGCCACAGCTCTCATATTTATTTCTTAAT TTTAATGGGGAAGTATATTGACTATTGTGTTTGTCAAGAAACAAAGTAGTAAATGCTGAATTCTCACAATGTTTATTATT TCTATTCAAGAAAATTTTGAAGTTTCATGTGTTAATTGTTGCTCTGTTGCATGTTAATTTCTGTGCTATTTGGATAAAAC AGTTCATGAACTGATAATAGTAAAGTCTTCTTTTCTTCTTTTTTTTATCAGGAATAATTGCTAGGTTGACATGATTAAAA AAATTGGGTTTTGGGGTTGATTTTTTAGAGTGATATATGGTTTTGAAGAAGGGTATTATGATGATGGATGACAGAGAATT TAGATGAAAATTCTGTTCTGAAACCTGAAAGTGCTGTTGAGCCAAACTTGAGTTGAAAACAACAGCTTCAATTGGAAATG GAAGGGAGGGGGTTTTCTGGTTTATATAGAAACTCAAGTGAAGAATTGTTCCTGAAGACAGTGATGGAGAGCCCTATTGG TATGCCAGTTCCTTCAATGGAGATGCTGGGTTTCAAGAATGTTTCTCAAGGCTTTCGCGCAGATAGCGAGGAGCTTTTCA AACGCTGGCTAACAAATGGAGAGGCAAGATCATGTTACCTTGTTCTTTGTTGTTGTTTCTGTTATGGCTTGTGTCAAATA TGAGATTAAAGTAGAAAATTTCCTTCATCCCAGTTTTCTATCTTGACATGCATCTTTTGATTTCAAGTTTATGAAAAATT CCTGAACTTTGTATCTCTGAATTGTGTGTATTTGAGCATATATGATATATGCCTATTAACTATGATCAGGAGCATAGAAG TGAAAAATCAATTTGGCTTTCTATCAAGCAGCAACAATTAAATGACAAAGTTTTCTTCACCTTTTGAGTGGAATCATTTT GCTCTGATGCTCAGTTGACGATGCTTTCTACTTCATTTACTATAATAATGTATCAAATAGACAATTATATGGCATGTCTT ATGGTTTATTAAGGATGGTAATACACATCAATGCTATATAGACACTCTTCTGATTATGGAACATGTAATTGTTGGTTACT AGAATTATGTTTTCCCTAGCCACATTTCTGATTTTCAATTCCTTTCTATTGATGTATCTTTGTTTTCTAAATCAGGGATA CAATTCATCAAGCATAGGGTTTAGCAGTCGATTATCAAAGAGGTGAGTATGTTAGTGAAAGAAGAACTTTTTGTAAAAGT GCATCTTGTAATTGCTGATTTTTGTTGGGATCACTTTAAATATCTCCTGAAACATCAGGCTTTGATTAGTTTTGTTATTG AGTTCCTTTTATATTTTGTACCTTCAGGATATCCACTGAACTAGTTAATGGATCTAATCAGCTACAAGTTGGTGTAGCCT CAGATGGAAGAAACAATGACAAACCATTCATACAAAATAACCTTTTGGCAAATGATGTTTCAGGTGATTTCAATTTTCCA ATCAGGTAATTGCTCTATTCTTCCTCTAACAGTTATAGATATAAAATTTTACAAACCAAAATTTATTTCAAGATGTGACA ATCCTGGTAAAGAGCTTATTGCTCCTTTCTTATTTGATTGAGAAAGTTGTTCAATATTTCTAACTTAGTTTGCTGTCAAT TTCATCAGAGATCCTGTTGATAGAGAACTGCAACCTAGTAACTTGTTTCTAGCCAAGGTTTGTTGATATCAAACTCTTTG CTAAAGCCTAAGTTCCATAAAGCTTCATGGTCATTCAGTGTCTCATTATTGATGCAGGCCTGGTTTCTCAGTGATCAACG AATGACAAGAAGCCGGTCCTCTGAATTGCGGTACCATTATCACACCTTGCATGTTCTTCAAAATGATAATTTTCTTTAAC TCTACCCAAATTTCATCAAACACCTTGCACTATATTAATTCATCTGTTTTCTTTAGATCCTGGAGTTTGTGATTTCTACT TTTTCTTTGTTATTGTGATTTAATATCAACTGTTTGAGAGAAATTTCAAACCACTCATTTGCTAGGCTTTCTCTGCAGGC GGCGATATTCTGAAATGCAAAATGGTCTAGCCACACAAGGAATAGAATCCATTTGCATGGATCCTCAGCATGGTGCTGAG GCAACAAAACAAGAAGTTGCAAATTTCAATGGTTACAATTATCTCTCTATGTGTGAGCTTCCAAGTCAAAAGGGTTCATT CATGTCTCCGTCCAACTCATGTTCATCTAACTTCAACACACCTCAATTTGGCGACATGGATAAAGTTTCATCTTGTGTAA GTATGCTGAAAGGGACATTACAACGCCGGAGACTCAGCAGTCAACTTGAGAAAGAAGCTGCAGAAGATGACTTAAATGGA ATTTTTTATCCTCAAGAACCTCTTTTCCAAACTGGCTTTGATCAAGGACAAGAAAACTGGAGTAATCAAACGCCAGTAAA TGTTCAAGTAGACTCTATTGGTGAAGTTAAGGATCATGGAGTCCTGCAAACACTAGAAGGATCCACAAACCCTGTCGTTG ATGGTTTTGCAAATCAGATAAACCAAATCTATGTCGGAACAGCTTCTGGAGAACCTTCTCAAAGTGAATCCTCTAATGCT GCACCAGTAATCTCCTCTGGTTTAGACACATGCGAAGGTCCCATAAACTCGAATCAAACTCTCTGCGAAAGCTCATGGAA ACAAGTAGGAGTGAGTAAAAGTTCAGAAAATACTCAAAATAGAGTCAAAGGTATGCATATCACAAAATGATGGAATTGTT TACTAAATCATTGTTTATTGCACATCTTGAAGATTACTCATACCGAATTTTGACATAAGCGTGCAAAGAAATTTTCAGCA TTATTTTAACTTCTTTTTTAGTTCTCAGCTTTTGAAAAATTTAATATGGATGCATTACAGAGTTCAGAAATTGATCAGCT CAATTTGGTAGTGTGTTCTGTAAAAACCAACCCAACAAAGCTGTGACTACAAACTTGGAGTCCCCAGGCCCCAGCTTAAG CATATATGATTTCTTAATATTTGGAACTCTAGTTAACACAGAAATGTTTCATATTTAACTTACAAACGATACACATTTAT CTTATTAGACTACAATTGTGCTTTTGTGAAAATGCAGGTTTCAGAGAACAGATCATGGATAATCTGAAAGATGATAAGAA GGTATAACCTACTCTTAGATAGTAATCTATTTTCTTTAGAGTTATGGTTTTCCCATTGGATTTTTTATTTGAGGGGTTAA TTCTGCTAAATTGTGCAGAGAAAAAGTCTAGAAAGATATGGATCTATAACATCAGCTGTTTCAGGTAGGCATTTACTTTT GGATTATATGGATTCATTGTGCTCTAAAACATGCATTAGAATTTTGATTCTCTTTATTGCTTCATCTGTTCTGAAGCTTT TGATCTTAATTTTAGAAAACTCAGGTTCTCTGTCCTGAAGCAAATATGTAAATGATAGATATAACGAAACCATCAGAAGA ATATTTGGCAGCCTGCATGAATCCAAAAAGATTAAACTTCCTTGTTTAGATAATTGTAACTCTTAAGTCTTACCACATTC ATTAATAAGTTCTGGTTTCTACCCTATCATACTATTGATTTAGATAATTGTAAATCCATCATCCTAATTATAAATCCACC AAAACTATTATATTATGCAAGATCACAAATTTCTGTTCCTATCACACACAACATTTGATGTAATTATCATGGCTAAAAAA AAAATTAAAAAAGGAATGTTGTGTTAGGCATGTGGCAGCCAGCATAAAACTAGTTGTATCTTCAATATGGATCAAGTGAT CCCTATAGCCGAACACAGTTAATGGGATAAGGCTCCCATTGTCGTTGAGTAGAAGTTTTGGTTGTTCTTTTCACAATTTA ATTATCTATGTTCCTCTCTAACCAAATGATTCCACAGATGACAAGGGAGACACCACTAAAAAGCGTAGGGTGGAACGCTC AAGGAAGTATGCAACAAAAGAGTCTCTTCCTATCTATTAGTGTATTTTTGTATTGGATGTGTGTTTAAACTTTCAATTTT GAAACCCTTGTTATGCAGAATGGCTGAAGCTAAGGAAAGAAATTCGACACCATCAGTTCCCTCAGATATGCAAGCTGTCT TGAAGCGGTGCGAAAACCTTGAGAAGGAAGTTCGATCGCTAAAACTCAACTTGTCCTTCATGAATAGGTAATCAAACCAA ATCAAAATTAAGTGTATGCTAAGATAAATTTCACATACATTCTTCCACATTAAACATTAAAGTATGATCATAATCATTTT AGGGCTGCATGTATCACAATCTTGATTGCTTATTACTTTTTATACTAAATGGAAATATGAATTTTAACATGATGCACCAT GAATTTTCAGAAAGGATTCTGAACAAACAAAGCAGATAGAAGACCTTCAGAAGCAGAATGAAGAGCTGGCAGATGAAAAA GAGCGCCTCCTCGAAGAGATTGAAAGAATTCTATCAGAAACTGAAAAAATGTAATGATATGAGAATCAATGTTGTGCTCA AACACGCTATGACAAGAAAATCTCACCACAATCAACTTATGGTGTAAGAATCTGGAGTCTCTTGGCCTAGCATAAATTGC AAGGAACCTCTATCTAGTAAAATTTTATTTGTGATTTGAGAATCACAGACCAGGGTTCTGTATGTTAATTTTGAAAACGG TCAACATCATTAGTCTGGATAAATGTCCAAATTCTATTAAACTAACTTTTAAGTATATTATCATATATAACAACTTGACA AGTGTTTGGCCTTTTGATTTCATCTGGCATTGACATTTTGTTTCTATCACTCAATTCTCTCCCTCTATTTGATGCTCAGC TAAATAAATTGTTGGAGGACAAATTCAATTTTATACTAATAAATACACAAGTTGGATTACTTTTTTTCTTCTTGTTATAG ATACCAGGTTGTGATGGAATTTGGATTTGAGAACTTACACAGTTAAATAAACAGTGGTAAGGTGTCCTAGAACAAAGTTT TTTTTTTTTTTTGAACTTTTAGAACAAAGTTGAGATTTGTGTGAGTGTCACAAATTATTAGATTGCAAAGGGAACTTGTT CACTTCTTTCTTTAGAGGTTTTATCATGCTGAGAAGAGAACAAAACCTGAAAAAGAACCGAGTTCTATTTTAAAATTCAA TAATATCAAATTGAATAAAAAATAGTGAATGATAAAAAGAACCGAGTTCTATTTAAAATTCAATATTATCAAATTGAATA AAAAATAGCGAATGACATTTTTTTTGTACAGCCAATGATAAATTTAATGAAGGAAGAGAACAATTATTATCATTTTTTAC TTCGGAAAGATAAATTACACCATGTGGGAATTGATCCATGGATCTTTCTCTAACTCTTACCACTTGAGTTAGCCTCTTCA CCCTTCATTTCCCCCAACCTTTATGCCCTATATCTCTTACCACTTGAGCTAACAAAATTAACACATTTGATTAACTTCAT TTGTATACTTTATATTTTCTTTAAAATTGGATTATGAAATATTAATTCTGTGAAATCATATTATGAATTTGATGTAGGAG
CDS sequence (LotjaGi2g1v0343300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCCCTAGCCACATTTCTGATTTTCAATTCCTTTCTATTGATGTATCTTTGTTTTCTAAATCAGGGATACAATTC ATCAAGCATAGGGTTTAGCAGTCGATTATCAAAGAGGATATCCACTGAACTAGTTAATGGATCTAATCAGCTACAAGTTG GTGTAGCCTCAGATGGAAGAAACAATGACAAACCATTCATACAAAATAACCTTTTGGCAAATGATGTTTCAGGTGATTTC AATTTTCCAATCAGAGATCCTGTTGATAGAGAACTGCAACCTAGTAACTTGTTTCTAGCCAAGGCCTGGTTTCTCAGTGA TCAACGAATGACAAGAAGCCGGTCCTCTGAATTGCGGCGGCGATATTCTGAAATGCAAAATGGTCTAGCCACACAAGGAA TAGAATCCATTTGCATGGATCCTCAGCATGGTGCTGAGGCAACAAAACAAGAAGTTGCAAATTTCAATGGTTACAATTAT CTCTCTATGTGTGAGCTTCCAAGTCAAAAGGGTTCATTCATGTCTCCGTCCAACTCATGTTCATCTAACTTCAACACACC TCAATTTGGCGACATGGATAAAGTTTCATCTTGTGTAAGTATGCTGAAAGGGACATTACAACGCCGGAGACTCAGCAGTC AACTTGAGAAAGAAGCTGCAGAAGATGACTTAAATGGAATTTTTTATCCTCAAGAACCTCTTTTCCAAACTGGCTTTGAT CAAGGACAAGAAAACTGGAGTAATCAAACGCCAGTAAATGTTCAAGTAGACTCTATTGGTGAAGTTAAGGATCATGGAGT CCTGCAAACACTAGAAGGATCCACAAACCCTGTCGTTGATGGTTTTGCAAATCAGATAAACCAAATCTATGTCGGAACAG CTTCTGGAGAACCTTCTCAAAGTGAATCCTCTAATGCTGCACCAGTAATCTCCTCTGGTTTAGACACATGCGAAGGTCCC ATAAACTCGAATCAAACTCTCTGCGAAAGCTCATGGAAACAAGTAGGAGTGAGTAAAAGTTCAGAAAATACTCAAAATAG AGTCAAAGGTTTCAGAGAACAGATCATGGATAATCTGAAAGATGATAAGAAGAGAAAAAGTCTAGAAAGATATGGATCTA TAACATCAGCTGTTTCAGATGACAAGGGAGACACCACTAAAAAGCGTAGGGTGGAACGCTCAAGGAAAATGGCTGAAGCT AAGGAAAGAAATTCGACACCATCAGTTCCCTCAGATATGCAAGCTGTCTTGAAGCGGTGCGAAAACCTTGAGAAGGAAGT TCGATCGCTAAAACTCAACTTGTCCTTCATGAATAGAAAGGATTCTGAACAAACAAAGCAGATAGAAGACCTTCAGAAGC AGAATGAAGAGCTGGCAGATGAAAAAGAGCGCCTCCTCGAAGAGATTGAAAGAATTCTATCAGAAACTGAAAAAATGTAA
Protein sequence (LotjaGi2g1v0343300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSLATFLIFNSFLLMYLCFLNQGYNSSSIGFSSRLSKRISTELVNGSNQLQVGVASDGRNNDKPFIQNNLLANDVSGDF NFPIRDPVDRELQPSNLFLAKAWFLSDQRMTRSRSSELRRRYSEMQNGLATQGIESICMDPQHGAEATKQEVANFNGYNY LSMCELPSQKGSFMSPSNSCSSNFNTPQFGDMDKVSSCVSMLKGTLQRRRLSSQLEKEAAEDDLNGIFYPQEPLFQTGFD QGQENWSNQTPVNVQVDSIGEVKDHGVLQTLEGSTNPVVDGFANQINQIYVGTASGEPSQSESSNAAPVISSGLDTCEGP INSNQTLCESSWKQVGVSKSSENTQNRVKGFREQIMDNLKDDKKRKSLERYGSITSAVSDDKGDTTKKRRVERSRKMAEA KERNSTPSVPSDMQAVLKRCENLEKEVRSLKLNLSFMNRKDSEQTKQIEDLQKQNEELADEKERLLEEIERILSETEKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 33 | 18 | - | – | |
| PANTHER | 22 | 479 | 458 | 2.3E-195 | ||
| Phobius | 34 | 479 | 446 | - | – | |
| MobiDBLite | 362 | 412 | 51 | - | – | |
| MobiDBLite | 381 | 402 | 22 | - | – | |
| Coils | 413 | 479 | 67 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Arbuscular mycorrhizal association | A form of mutualism between a fungus and the roots of a vascular plant, where hyphae of the fungus penetrate the plant cell wall and invaginate its cell membrane. Once inside, the fungus forms highly branched structures for nutrient exchange with the plant called arbuscules. Aids in the acquisition by the plant of nutrients such as phosphorus from the soil. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0343300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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