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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0343300 |
| Transcript ID | LotjaGi2g1v0343300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CYCLOPS; TAIR: AT2G45910.1 U-box domain-containing protein kinase family protein; Swiss-Prot: sp|Q7Z7A1|CNTRL_HUMAN Centriolin; TrEMBL-Plants: tr|A9XMT3|A9XMT3_LOTJA CYCLOPS; Found in the gene: LotjaGi2g1v0343300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82066991..82072081) extracted from Lotus japonicus Gifu genome v1.2.
CAGCTTCTTAATATTTTAAATCCAAACACAACCAATGAATGTTCCTCAACATCACCATTATCCAATCAGCACCACCTGTG GCATTTGTTTAATACATTAGAAAAGATGACCAAGTTGTGATTAATTTAACACAATGATTCCCTTTGCTTCATTCAAAAGT TAAAATCTTTTCTCAGTTTTGAGCCTGCCCATCAAATTTCCACACGGTTTCCAACCGTTGAAAGACTATTTTTACTGCCG CAAAGATTTCTCCTTTCATTCTGCACAAGAGACAAATGAATGGTACATGGAATCTTTGGAGTATTTATTTCACTCTTAGA TGCCACAGCTCTCATATTTATTTCTTAATTTTAATGGGGAAGTATATTGACTATTGTGTTTGTCAAGAAACAAAGTAGTA AATGCTGAATTCTCACAATGTTTATTATTTCTATTCAAGAAAATTTTGAAGTTTCATGTGTTAATTGTTGCTCTGTTGCA TGTTAATTTCTGTGCTATTTGGATAAAACAGTTCATGAACTGATAATAGTAAAGTCTTCTTTTCTTCTTTTTTTTATCAG GAATAATTGCTAGGTTGACATGATTAAAAAAATTGGGTTTTGGGGTTGATTTTTTAGAGTGATATATGGTTTTGAAGAAG GGTATTATGATGATGGATGACAGAGAATTTAGATGAAAATTCTGTTCTGAAACCTGAAAGTGCTGTTGAGCCAAACTTGA GTTGAAAACAACAGCTTCAATTGGAAATGGAAGGGAGGGGGTTTTCTGGTTTATATAGAAACTCAAGTGAAGAATTGTTC CTGAAGACAGTGATGGAGAGCCCTATTGGTATGCCAGTTCCTTCAATGGAGATGCTGGGTTTCAAGAATGTTTCTCAAGG CTTTCGCGCAGATAGCGAGGAGCTTTTCAAACGCTGGCTAACAAATGGAGAGGCAAGATCATGTTACCTTGTTCTTTGTT GTTGTTTCTGTTATGGCTTGTGTCAAATATGAGATTAAAGTAGAAAATTTCCTTCATCCCAGTTTTCTATCTTGACATGC ATCTTTTGATTTCAAGTTTATGAAAAATTCCTGAACTTTGTATCTCTGAATTGTGTGTATTTGAGCATATATGATATATG CCTATTAACTATGATCAGGAGCATAGAAGTGAAAAATCAATTTGGCTTTCTATCAAGCAGCAACAATTAAATGACAAAGT TTTCTTCACCTTTTGAGTGGAATCATTTTGCTCTGATGCTCAGTTGACGATGCTTTCTACTTCATTTACTATAATAATGT ATCAAATAGACAATTATATGGCATGTCTTATGGTTTATTAAGGATGGTAATACACATCAATGCTATATAGACACTCTTCT GATTATGGAACATGTAATTGTTGGTTACTAGAATTATGTTTTCCCTAGCCACATTTCTGATTTTCAATTCCTTTCTATTG ATGTATCTTTGTTTTCTAAATCAGGGATACAATTCATCAAGCATAGGGTTTAGCAGTCGATTATCAAAGAGGTGAGTATG TTAGTGAAAGAAGAACTTTTTGTAAAAGTGCATCTTGTAATTGCTGATTTTTGTTGGGATCACTTTAAATATCTCCTGAA ACATCAGGCTTTGATTAGTTTTGTTATTGAGTTCCTTTTATATTTTGTACCTTCAGGATATCCACTGAACTAGTTAATGG ATCTAATCAGCTACAAGTTGGTGTAGCCTCAGATGGAAGAAACAATGACAAACCATTCATACAAAATAACCTTTTGGCAA ATGATGTTTCAGGTGATTTCAATTTTCCAATCAGGTAATTGCTCTATTCTTCCTCTAACAGTTATAGATATAAAATTTTA CAAACCAAAATTTATTTCAAGATGTGACAATCCTGGTAAAGAGCTTATTGCTCCTTTCTTATTTGATTGAGAAAGTTGTT CAATATTTCTAACTTAGTTTGCTGTCAATTTCATCAGAGATCCTGTTGATAGAGAACTGCAACCTAGTAACTTGTTTCTA GCCAAGGTTTGTTGATATCAAACTCTTTGCTAAAGCCTAAGTTCCATAAAGCTTCATGGTCATTCAGTGTCTCATTATTG ATGCAGGCCTGGTTTCTCAGTGATCAACGAATGACAAGAAGCCGGTCCTCTGAATTGCGGTACCATTATCACACCTTGCA TGTTCTTCAAAATGATAATTTTCTTTAACTCTACCCAAATTTCATCAAACACCTTGCACTATATTAATTCATCTGTTTTC TTTAGATCCTGGAGTTTGTGATTTCTACTTTTTCTTTGTTATTGTGATTTAATATCAACTGTTTGAGAGAAATTTCAAAC CACTCATTTGCTAGGCTTTCTCTGCAGGCGGCGATATTCTGAAATGCAAAATGGTCTAGCCACACAAGGAATAGAATCCA TTTGCATGGATCCTCAGCATGGTGCTGAGGCAACAAAACAAGAAGTTGCAAATTTCAATGGTTACAATTATCTCTCTATG TGTGAGCTTCCAAGTCAAAAGGGTTCATTCATGTCTCCGTCCAACTCATGTTCATCTAACTTCAACACACCTCAATTTGG CGACATGGATAAAGTTTCATCTTGTGTAAGTATGCTGAAAGGGACATTACAACGCCGGAGACTCAGCAGTCAACTTGAGA AAGAAGCTGCAGAAGATGACTTAAATGGAATTTTTTATCCTCAAGAACCTCTTTTCCAAACTGGCTTTGATCAAGGACAA GAAAACTGGAGTAATCAAACGCCAGTAAATGTTCAAGTAGACTCTATTGGTGAAGTTAAGGATCATGGAGTCCTGCAAAC ACTAGAAGGATCCACAAACCCTGTCGTTGATGGTTTTGCAAATCAGATAAACCAAATCTATGTCGGAACAGCTTCTGGAG AACCTTCTCAAAGTGAATCCTCTAATGCTGCACCAGTAATCTCCTCTGGTTTAGACACATGCGAAGGTCCCATAAACTCG AATCAAACTCTCTGCGAAAGCTCATGGAAACAAGTAGGAGTGAGTAAAAGTTCAGAAAATACTCAAAATAGAGTCAAAGG TATGCATATCACAAAATGATGGAATTGTTTACTAAATCATTGTTTATTGCACATCTTGAAGATTACTCATACCGAATTTT GACATAAGCGTGCAAAGAAATTTTCAGCATTATTTTAACTTCTTTTTTAGTTCTCAGCTTTTGAAAAATTTAATATGGAT GCATTACAGAGTTCAGAAATTGATCAGCTCAATTTGGTAGTGTGTTCTGTAAAAACCAACCCAACAAAGCTGTGACTACA AACTTGGAGTCCCCAGGCCCCAGCTTAAGCATATATGATTTCTTAATATTTGGAACTCTAGTTAACACAGAAATGTTTCA TATTTAACTTACAAACGATACACATTTATCTTATTAGACTACAATTGTGCTTTTGTGAAAATGCAGGTTTCAGAGAACAG ATCATGGATAATCTGAAAGATGATAAGAAGGTATAACCTACTCTTAGATAGTAATCTATTTTCTTTAGAGTTATGGTTTT CCCATTGGATTTTTTATTTGAGGGGTTAATTCTGCTAAATTGTGCAGAGAAAAAGTCTAGAAAGATATGGATCTATAACA TCAGCTGTTTCAGGTAGGCATTTACTTTTGGATTATATGGATTCATTGTGCTCTAAAACATGCATTAGAATTTTGATTCT CTTTATTGCTTCATCTGTTCTGAAGCTTTTGATCTTAATTTTAGAAAACTCAGGTTCTCTGTCCTGAAGCAAATATGTAA ATGATAGATATAACGAAACCATCAGAAGAATATTTGGCAGCCTGCATGAATCCAAAAAGATTAAACTTCCTTGTTTAGAT AATTGTAACTCTTAAGTCTTACCACATTCATTAATAAGTTCTGGTTTCTACCCTATCATACTATTGATTTAGATAATTGT AAATCCATCATCCTAATTATAAATCCACCAAAACTATTATATTATGCAAGATCACAAATTTCTGTTCCTATCACACACAA CATTTGATGTAATTATCATGGCTAAAAAAAAAATTAAAAAAGGAATGTTGTGTTAGGCATGTGGCAGCCAGCATAAAACT AGTTGTATCTTCAATATGGATCAAGTGATCCCTATAGCCGAACACAGTTAATGGGATAAGGCTCCCATTGTCGTTGAGTA GAAGTTTTGGTTGTTCTTTTCACAATTTAATTATCTATGTTCCTCTCTAACCAAATGATTCCACAGATGACAAGGGAGAC ACCACTAAAAAGCGTAGGGTGGAACGCTCAAGGAAGTATGCAACAAAAGAGTCTCTTCCTATCTATTAGTGTATTTTTGT ATTGGATGTGTGTTTAAACTTTCAATTTTGAAACCCTTGTTATGCAGAATGGCTGAAGCTAAGGAAAGAAATTCGACACC ATCAGTTCCCTCAGATATGCAAGCTGTCTTGAAGCGGTGCGAAAACCTTGAGAAGGAAGTTCGATCGCTAAAACTCAACT TGTCCTTCATGAATAGGTAATCAAACCAAATCAAAATTAAGTGTATGCTAAGATAAATTTCACATACATTCTTCCACATT AAACATTAAAGTATGATCATAATCATTTTAGGGCTGCATGTATCACAATCTTGATTGCTTATTACTTTTTATACTAAATG GAAATATGAATTTTAACATGATGCACCATGAATTTTCAGAAAGGATTCTGAACAAACAAAGCAGATAGAAGACCTTCAGA AGCAGAATGAAGAGCTGGCAGATGAAAAAGAGCGCCTCCTCGAAGAGATTGAAAGAATTCTATCAGAAACTGAAAAAATG TAATGATATGAGAATCAATGTTGTGCTCAAACACGCTATGACAAGAAAATCTCACCACAATCAACTTATGGTGTAAGAAT CTGGAGTCTCTTGGCCTAGCATAAATTGCAAGGAACCTCTATCTAGTAAAATTTTATTTGTGATTTGAGAATCACAGACC AGGGTTCTGTATGTTAATTTTGAAAACGGTCAACATCATTAGTCTGGATAAATGTCCAAATTCTATTAAACTAACTTTTA AGTATATTATCATATATAACAACTTGACAAGTGTTTGGCCTTTTGATTTCA
CDS sequence (LotjaGi2g1v0343300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGGAGGGGGTTTTCTGGTTTATATAGAAACTCAAGTGAAGAATTGTTCCTGAAGACAGTGATGGAGAGCCCTAT TGGTATGCCAGTTCCTTCAATGGAGATGCTGGGTTTCAAGAATGTTTCTCAAGGCTTTCGCGCAGATAGCGAGGAGCTTT TCAAACGCTGGCTAACAAATGGAGAGGGATACAATTCATCAAGCATAGGGTTTAGCAGTCGATTATCAAAGAGGATATCC ACTGAACTAGTTAATGGATCTAATCAGCTACAAGTTGGTGTAGCCTCAGATGGAAGAAACAATGACAAACCATTCATACA AAATAACCTTTTGGCAAATGATGTTTCAGGTGATTTCAATTTTCCAATCAGAGATCCTGTTGATAGAGAACTGCAACCTA GTAACTTGTTTCTAGCCAAGGCCTGGTTTCTCAGTGATCAACGAATGACAAGAAGCCGGTCCTCTGAATTGCGGCGGCGA TATTCTGAAATGCAAAATGGTCTAGCCACACAAGGAATAGAATCCATTTGCATGGATCCTCAGCATGGTGCTGAGGCAAC AAAACAAGAAGTTGCAAATTTCAATGGTTACAATTATCTCTCTATGTGTGAGCTTCCAAGTCAAAAGGGTTCATTCATGT CTCCGTCCAACTCATGTTCATCTAACTTCAACACACCTCAATTTGGCGACATGGATAAAGTTTCATCTTGTGTAAGTATG CTGAAAGGGACATTACAACGCCGGAGACTCAGCAGTCAACTTGAGAAAGAAGCTGCAGAAGATGACTTAAATGGAATTTT TTATCCTCAAGAACCTCTTTTCCAAACTGGCTTTGATCAAGGACAAGAAAACTGGAGTAATCAAACGCCAGTAAATGTTC AAGTAGACTCTATTGGTGAAGTTAAGGATCATGGAGTCCTGCAAACACTAGAAGGATCCACAAACCCTGTCGTTGATGGT TTTGCAAATCAGATAAACCAAATCTATGTCGGAACAGCTTCTGGAGAACCTTCTCAAAGTGAATCCTCTAATGCTGCACC AGTAATCTCCTCTGGTTTAGACACATGCGAAGGTCCCATAAACTCGAATCAAACTCTCTGCGAAAGCTCATGGAAACAAG TAGGAGTGAGTAAAAGTTCAGAAAATACTCAAAATAGAGTCAAAGGTTTCAGAGAACAGATCATGGATAATCTGAAAGAT GATAAGAAGAGAAAAAGTCTAGAAAGATATGGATCTATAACATCAGCTGTTTCAGATGACAAGGGAGACACCACTAAAAA GCGTAGGGTGGAACGCTCAAGGAAAATGGCTGAAGCTAAGGAAAGAAATTCGACACCATCAGTTCCCTCAGATATGCAAG CTGTCTTGAAGCGGTGCGAAAACCTTGAGAAGGAAGTTCGATCGCTAAAACTCAACTTGTCCTTCATGAATAGAAAGGAT TCTGAACAAACAAAGCAGATAGAAGACCTTCAGAAGCAGAATGAAGAGCTGGCAGATGAAAAAGAGCGCCTCCTCGAAGA GATTGAAAGAATTCTATCAGAAACTGAAAAAATGTAA
Protein sequence (LotjaGi2g1v0343300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGRGFSGLYRNSSEELFLKTVMESPIGMPVPSMEMLGFKNVSQGFRADSEELFKRWLTNGEGYNSSSIGFSSRLSKRIS TELVNGSNQLQVGVASDGRNNDKPFIQNNLLANDVSGDFNFPIRDPVDRELQPSNLFLAKAWFLSDQRMTRSRSSELRRR YSEMQNGLATQGIESICMDPQHGAEATKQEVANFNGYNYLSMCELPSQKGSFMSPSNSCSSNFNTPQFGDMDKVSSCVSM LKGTLQRRRLSSQLEKEAAEDDLNGIFYPQEPLFQTGFDQGQENWSNQTPVNVQVDSIGEVKDHGVLQTLEGSTNPVVDG FANQINQIYVGTASGEPSQSESSNAAPVISSGLDTCEGPINSNQTLCESSWKQVGVSKSSENTQNRVKGFREQIMDNLKD DKKRKSLERYGSITSAVSDDKGDTTKKRRVERSRKMAEAKERNSTPSVPSDMQAVLKRCENLEKEVRSLKLNLSFMNRKD SEQTKQIEDLQKQNEELADEKERLLEEIERILSETEKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 518 | 518 | 1.9E-230 | ||
| MobiDBLite | 401 | 451 | 51 | - | – | |
| MobiDBLite | 420 | 441 | 22 | - | – | |
| Coils | 452 | 518 | 67 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Arbuscular mycorrhizal association | A form of mutualism between a fungus and the roots of a vascular plant, where hyphae of the fungus penetrate the plant cell wall and invaginate its cell membrane. Once inside, the fungus forms highly branched structures for nutrient exchange with the plant called arbuscules. Aids in the acquisition by the plant of nutrients such as phosphorus from the soil. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0343300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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