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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0414350 |
| Transcript ID | LotjaGi3g1v0414350.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulation signaling protein 1; TAIR: AT3G13840.1 GRAS family transcription factor; Swiss-Prot: sp|Q4VYC8|NSP1_MEDTR Nodulation-signaling pathway 1 protein; TrEMBL-Plants: tr|A1DQP9|A1DQP9_LOTJA Nodulation signaling pathway 1 protein; Found in the gene: LotjaGi3g1v0414350 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81961144..81962772) extracted from Lotus japonicus Gifu genome v1.2.
ATGACCATGGAACCAAACTCAACAACTTCAGATCACATACTGGATTGGCTTGAAGGTTCTGTCTCTTTCTTCCCATCATT CTTAGATGAACCATGTAACAACTCTGGTTACATCCAAGAGTACCACTTGTGGGATCAGTACCAAACTGATGCAAATACTG GCTCTTCACCTAATGCCACAAACAGCACCACCGCCACTATAGTTGCTACTAGTGCCACCAGCACAACATCCCTTGAGCCT TGTGGCTCTAACAACAACCAACCACTTTCTGATTTGCCCAAGAAACGAAATGCCACTGATGAATCAAGCCTCAAACCGCC ACAAAACAAGAACAAGAGAATCAAGACCCGTCCAATGAATGAACCTGAGAATGGAGATGCAGTTAGAAAAAACAAGAAAG GTGGAGCTAAGGCCAATGGAAGCAACTGCAACAGTGGAAATAGCAAAGAAGGTAGATGGGCAGAGCAATTGCTCAACCCT TGTGCTGCAGCCATAGCCGGCGGAAACGTGAACCGTGTGCAGCATCTTTTATATGTTCTCCACGAGCTAGCCTCGCCTAC CGGTGATCCTAACCACCGGCTCGCGGCTCATGGTCTCCGAGCACTGACACACCACTTATCCTCTTCTTCTTCATCACCTA CCTCTTCAGGGACTATAACTTTTGCATCTACAGAACCAAGGTTCTTCCAGAAGTCACTGCTGAAGTTCTATGAGGTTAGT CCTTGGTTTTCCTTTCCCAATAACATAGCAAATGCTTCAATCCTGCAAGTTCTTGCTGAAGAGGCGAACATCACTTCGCG TACCCTCCACATCCTTGACATTGGAGTCTCACATGGCGTGCAATGGCCGACTCTGCTCGATGCCTTGAGTCGTCGATCCG GTGGACCGCCTTCAGTAGTTCGCCTCACGGTGGTTACAGCTGAAAATGACCAAAACATGGAGACCCCATTTTCAAAAGCT CCACCTGGTTATAACTACTATCCTAGGCTCCTTGGTTATGCTCAGTCCATAAACATCAATTTGCAGATAAACAGGATAGA AAATCACTCATTACAGACACTGAATGCTCAGAGTATCAGTGCCTCCCCGGATGAAATTTTAATTGTCTGTGCCCAGTTCA GGCTGCATCACTTGAATCATAACAGCCCTGACGAGAGGAGTGAGTTTCTGAAGGTGTTGAGGAACATGGAGCCCAGAGGG GTGATACTAAGCGAGAACAATACAGAGTGTTGCTGCAGTGGATGTGGGAACTTCGCGGCTGGGTTCACTCGGAGAGTGGA GTACTTGTGGAGGTTCTTGGATTCAACCAGCTCAGCGTTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTG AGGCTGCGAAAGCACTGACAAACCAGCGGGAGATGAATGAAGAGAAAGAGAAATGGTGTGGAAGAATGAAAGAAGCAGGG TTTGCAGGGGAAGTGTTCGGAGAGGATGCCGTTGATGGAGGTCGAGCTTTGTTGAGGAAGTATGACAGTAATTGGGAGAT GAAAGTTGAAGAAAAGAACACAAGTGTGGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTTTGTGGAAGCTGG ATGGGAATGACCAGGGTGGCACAAGCTGA
CDS sequence (LotjaGi3g1v0414350.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCATGGAACCAAACTCAACAACTTCAGATCACATACTGGATTGGCTTGAAGGTTCTGTCTCTTTCTTCCCATCATT CTTAGATGAACCATGTAACAACTCTGGTTACATCCAAGAGTACCACTTGTGGGATCAGTACCAAACTGATGCAAATACTG GCTCTTCACCTAATGCCACAAACAGCACCACCGCCACTATAGTTGCTACTAGTGCCACCAGCACAACATCCCTTGAGCCT TGTGGCTCTAACAACAACCAACCACTTTCTGATTTGCCCAAGAAACGAAATGCCACTGATGAATCAAGCCTCAAACCGCC ACAAAACAAGAACAAGAGAATCAAGACCCGTCCAATGAATGAACCTGAGAATGGAGATGCAGTTAGAAAAAACAAGAAAG GTGGAGCTAAGGCCAATGGAAGCAACTGCAACAGTGGAAATAGCAAAGAAGGTAGATGGGCAGAGCAATTGCTCAACCCT TGTGCTGCAGCCATAGCCGGCGGAAACGTGAACCGTGTGCAGCATCTTTTATATGTTCTCCACGAGCTAGCCTCGCCTAC CGGTGATCCTAACCACCGGCTCGCGGCTCATGGTCTCCGAGCACTGACACACCACTTATCCTCTTCTTCTTCATCACCTA CCTCTTCAGGGACTATAACTTTTGCATCTACAGAACCAAGGTTCTTCCAGAAGTCACTGCTGAAGTTCTATGAGGTTAGT CCTTGGTTTTCCTTTCCCAATAACATAGCAAATGCTTCAATCCTGCAAGTTCTTGCTGAAGAGGCGAACATCACTTCGCG TACCCTCCACATCCTTGACATTGGAGTCTCACATGGCGTGCAATGGCCGACTCTGCTCGATGCCTTGAGTCGTCGATCCG GTGGACCGCCTTCAGTAGTTCGCCTCACGGTGGTTACAGCTGAAAATGACCAAAACATGGAGACCCCATTTTCAAAAGCT CCACCTGGTTATAACTACTATCCTAGGCTCCTTGGTTATGCTCAGTCCATAAACATCAATTTGCAGATAAACAGGATAGA AAATCACTCATTACAGACACTGAATGCTCAGAGTATCAGTGCCTCCCCGGATGAAATTTTAATTGTCTGTGCCCAGTTCA GGCTGCATCACTTGAATCATAACAGCCCTGACGAGAGGAGTGAGTTTCTGAAGGTGTTGAGGAACATGGAGCCCAGAGGG GTGATACTAAGCGAGAACAATACAGAGTGTTGCTGCAGTGGATGTGGGAACTTCGCGGCTGGGTTCACTCGGAGAGTGGA GTACTTGTGGAGGTTCTTGGATTCAACCAGCTCAGCGTTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTG AGGCTGCGAAAGCACTGACAAACCAGCGGGAGATGAATGAAGAGAAAGAGAAATGGTGTGGAAGAATGAAAGAAGCAGGG TTTGCAGGGGAAGTGTTCGGAGAGGATGCCGTTGATGGAGGTCGAGCTTTGTTGAGGAAGTATGACAGTAATTGGGAGAT GAAAGTTGAAGAAAAGAACACAAGTGTGGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTTTGTGGAAGCTGG ATGGGAATGACCAGGGTGGCACAAGCTGA
Protein sequence (LotjaGi3g1v0414350.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMEPNSTTSDHILDWLEGSVSFFPSFLDEPCNNSGYIQEYHLWDQYQTDANTGSSPNATNSTTATIVATSATSTTSLEP CGSNNNQPLSDLPKKRNATDESSLKPPQNKNKRIKTRPMNEPENGDAVRKNKKGGAKANGSNCNSGNSKEGRWAEQLLNP CAAAIAGGNVNRVQHLLYVLHELASPTGDPNHRLAAHGLRALTHHLSSSSSSPTSSGTITFASTEPRFFQKSLLKFYEVS PWFSFPNNIANASILQVLAEEANITSRTLHILDIGVSHGVQWPTLLDALSRRSGGPPSVVRLTVVTAENDQNMETPFSKA PPGYNYYPRLLGYAQSININLQINRIENHSLQTLNAQSISASPDEILIVCAQFRLHHLNHNSPDERSEFLKVLRNMEPRG VILSENNTECCCSGCGNFAAGFTRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQREMNEEKEKWCGRMKEAG FAGEVFGEDAVDGGRALLRKYDSNWEMKVEEKNTSVGLWWKGQPVSFCSLWKLDGNDQGGTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 73 | 150 | 78 | - | – | |
| MobiDBLite | 73 | 93 | 21 | - | – | |
| PANTHER | 98 | 532 | 435 | 6.8E-180 | – | |
| PANTHER | 98 | 532 | 435 | 6.8E-180 | ||
| MobiDBLite | 114 | 133 | 20 | - | – | |
| ProSiteProfiles | 145 | 532 | 388 | 57.892 | ||
| Pfam | 155 | 532 | 378 | 5.7E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0414350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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