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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0343900 |
| Transcript ID | LotjaGi4g1v0343900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit B; TAIR: AT2G47810.1 nuclear factor Y, subunit B5; Swiss-Prot: sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5; TrEMBL-Plants: tr|A0A0B2QYD6|A0A0B2QYD6_GLYSO Nuclear transcription factor Y subunit B-5; Found in the gene: LotjaGi4g1v0343900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72373176..72374451) extracted from Lotus japonicus Gifu genome v1.2.
AACGACATTCATATGTGACTAAGCTCTTAATATATATGTACATGATGCATCATCGACTAACATGTTTGGATAAACTTCTT TTTTCTCAGAAGAAATTATAACACCCAAAATCTTCTCTCCATAATTGATTTTGCCTTTAAAATTAAGATTTGCAAACATG CACTACACGTAGATGTGAGTTTTCACTATTTACAAGGAATCGAAAGCAAATCAGAAGTTAAACACACTATATATATGCTA GGATTCTGTCTGACCTTGATTACCACTCTAACTAAGTCATAGTCAAAGAGAGAAAGAAACTTAAGTTAATTTATTCCTGG GACATCAAGAGAATGGAGGATCACATTGGAAGCAGTTCCTCTAATGGTGGCATCAAGGAACAAGACCGGTTGTTGCCAAT AGCCAATGTTGGCAGGATCATGAAGCAGATTCTACCTCAGAATGCAAAAATCTCCAAGGAATCAAAGGAGACAATGCAAG AGTGTGTGTCAGAGTTCATAAGCTTCGTCACGAGTGAGGCCTCGGAGAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAAT GGAGATGACATATGCTGGGCCTTGGGAACACTAGGATTTGATGATTATGCAGATCCAATGAGAAGGTATTTGCACAGATA CAGAGAACTAGAGGTAGATAGAACTCATCAAGAAAGAGGTAATAGCCCTGAAGAGAAGGATGAACTTTTTAAGCTGTCCC AAAGAGGAACTAGGCACTGAAATTAATAGCATGTTTGGTTTCACGATTTTACACAAAATCCAAAGCACGTTTACTCAGAA GCTAAGATCTGATTTTGGCTTCAGAATCAACTGTAGCTTATCAGCAGAAGTAATTATGGAGCATTTCACGGTGGAACCAA AAATGCTGTAAAACCAAAATCAGGAGTAGAATTAATTTGTCTTGGACTGAGAGTAGGTGAAGATATCTCCATCTTAAAGC CAGTTTAAGGTTTTGAGCATGAGATATAATGTAATGGTTTTATTGTCTTAACTGGATTTAATTGCGTGAAGATTCAAGAA CTAAATTACTTGTTGTTTATTGTTATATGTACTTCCTTGTTTATGCAATTGATTTTTTTCCTCCCATTTTGAGATCAATG AATTCTGGACTTGGTTCTGCAGAATTCAGTTGTTGAAATTAAGTACTTCCACACCATGTTATTGCTTGCCCATACTCAAG ATACATCCACTAATCATACTTTACAAAACTTTCCTTCCAGTCCCCACCTCCACATGTTCTCTCATTCATAATTGAT
CDS sequence (LotjaGi4g1v0343900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATCACATTGGAAGCAGTTCCTCTAATGGTGGCATCAAGGAACAAGACCGGTTGTTGCCAATAGCCAATGTTGG CAGGATCATGAAGCAGATTCTACCTCAGAATGCAAAAATCTCCAAGGAATCAAAGGAGACAATGCAAGAGTGTGTGTCAG AGTTCATAAGCTTCGTCACGAGTGAGGCCTCGGAGAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAATGGAGATGACATA TGCTGGGCCTTGGGAACACTAGGATTTGATGATTATGCAGATCCAATGAGAAGGTATTTGCACAGATACAGAGAACTAGA GGTAGATAGAACTCATCAAGAAAGAGGTAATAGCCCTGAAGAGAAGGATGAACTTTTTAAGCTGTCCCAAAGAGGAACTA GGCACTGA
Protein sequence (LotjaGi4g1v0343900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDHIGSSSSNGGIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDI CWALGTLGFDDYADPMRRYLHRYRELEVDRTHQERGNSPEEKDELFKLSQRGTRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 119 | 113 | 5.0E-73 | – | |
| PANTHER | 7 | 119 | 113 | 5.0E-73 | – | |
| Gene3D | 10 | 134 | 125 | 3.0E-43 | ||
| SUPERFAMILY | 17 | 118 | 102 | 1.71E-38 | ||
| Pfam | 20 | 84 | 65 | 3.0E-27 | ||
| PRINTS | 48 | 66 | 19 | 1.1E-17 | – | |
| ProSitePatterns | 51 | 67 | 17 | - | ||
| PRINTS | 67 | 85 | 19 | 1.1E-17 | – | |
| PRINTS | 86 | 104 | 19 | 1.1E-17 | – | |
| MobiDBLite | 109 | 135 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi4g1v0343900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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