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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0449500 |
Transcript ID | LotjaGi4g1v0449500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | transcription repressor OFP17-like protein; TAIR: AT3G16070.1 LOW protein: ATP-dependent RNA helicase-like protein; Swiss-Prot: sp|Q84RF2|OPF17_ARATH Transcription repressor OFP17; TrEMBL-Plants: tr|A0A151T3L5|A0A151T3L5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0449500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82186102..82187226) extracted from Lotus japonicus Gifu genome v1.2.
TCATCATCAAAAAGGAAAAGGCAAAAGAATCTTTGGTGGCTCCTATGCTTCTATCATCTGTATAAAGAAACCTTCACTGT GATCATATCCAACTACAAAATACACACACATTTACATTCTGTTTTGTTTCCCTTCTCTGCATCATCAAAGTACAAACAGA ATAGAAGAATATTATCTCATCACTATCATTGTCATTGCAAAATGCTGATAAGAAGCTCCATTTCCAACACCAAGAAGCTC CTGCAAAAGACTCTGCAGAATTTCATGTCACTCTTCTGTCAAGGTTACCAAAAGCTTCCCAAAACACCTCCACACAATCA CTTCTCGTGTTCTGTGGCTGCAACTACTGTCATGAACATGGAGTTGGAGAAGTTCTACAGTGACTTCACTGAGCAATGGG ATTCAGAAATAGAGAAAACAAGGAGAAGAACTAAGAAGAAAGCTGCATTGCCAACTCCACTAGCAAAGCAAGAAGAAAAC AAGGTAGATAATCATGAAAGCTTCATAAGCTTGAACAGAACAAGCCCTGCAAAACAGAGGAATGAAATGGAGAAAATAGA GGAATGTGATGATCAAGAGAATAAAAGGAGCTTAACCCATCAAAGGGGAAAACAGAAACATTCAACCTTCAATTCTAAGA TGGAGGAGAAACTGAGAGAGTTGGAGAATTTGGACATGAGCAATGTGGACTATGTGCTAGACATTGAAGAGGTCCTTCAT TACTATTCTCGACTCACTTGCCCAATATATCTTGAAATTGTGGATAAATTCTTCATGGAAATGTACTCAGAGTTCTTAAG TGGTCCTGTGAGGCCTGTTACACCTTCTAGTGTCAACTCTAAGATGAAGCTGAGATCAGTGAAGTCTTAGACTCTGCCTT TGTTCTGTTTGGTGTTTCTACAAATGTGAAATTGCTTTGTTCAAGTATTTCGTTGATCAATGGAATAAATAGGCCTGCAC TTAGATATCAAAGTCTAGATTACATTTTATTTAAAAATTGATACGTTTCGGAAAATGAATGAATGTTTTTGAGCTTCTTT TTGTGGATGGTGCTGGCTGGGGTATGAAAAAATTTCGGTAGTATTCATTGAATTATTGAAAGCTTTAATCAGCTCAATAT GCGGA
CDS sequence (LotjaGi4g1v0449500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGATAAGAAGCTCCATTTCCAACACCAAGAAGCTCCTGCAAAAGACTCTGCAGAATTTCATGTCACTCTTCTGTCA AGGTTACCAAAAGCTTCCCAAAACACCTCCACACAATCACTTCTCGTGTTCTGTGGCTGCAACTACTGTCATGAACATGG AGTTGGAGAAGTTCTACAGTGACTTCACTGAGCAATGGGATTCAGAAATAGAGAAAACAAGGAGAAGAACTAAGAAGAAA GCTGCATTGCCAACTCCACTAGCAAAGCAAGAAGAAAACAAGGTAGATAATCATGAAAGCTTCATAAGCTTGAACAGAAC AAGCCCTGCAAAACAGAGGAATGAAATGGAGAAAATAGAGGAATGTGATGATCAAGAGAATAAAAGGAGCTTAACCCATC AAAGGGGAAAACAGAAACATTCAACCTTCAATTCTAAGATGGAGGAGAAACTGAGAGAGTTGGAGAATTTGGACATGAGC AATGTGGACTATGTGCTAGACATTGAAGAGGTCCTTCATTACTATTCTCGACTCACTTGCCCAATATATCTTGAAATTGT GGATAAATTCTTCATGGAAATGTACTCAGAGTTCTTAAGTGGTCCTGTGAGGCCTGTTACACCTTCTAGTGTCAACTCTA AGATGAAGCTGAGATCAGTGAAGTCTTAG
Protein sequence (LotjaGi4g1v0449500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIRSSISNTKKLLQKTLQNFMSLFCQGYQKLPKTPPHNHFSCSVAATTVMNMELEKFYSDFTEQWDSEIEKTRRRTKKK AALPTPLAKQEENKVDNHESFISLNRTSPAKQRNEMEKIEECDDQENKRSLTHQRGKQKHSTFNSKMEEKLRELENLDMS NVDYVLDIEEVLHYYSRLTCPIYLEIVDKFFMEMYSEFLSGPVRPVTPSSVNSKMKLRSVKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 218 | 217 | 1.1E-73 | – | |
PANTHER | 2 | 218 | 217 | 1.1E-73 | – | |
MobiDBLite | 120 | 144 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0449500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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