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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0074900 |
| Transcript ID | LotjaGi5g1v0074900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TRIO/F-actin-binding protein; TAIR: AT3G53320.1 mediator of RNA polymerase II transcription subunit-like protein; Swiss-Prot: sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B; TrEMBL-Plants: tr|A0A072VKF5|A0A072VKF5_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0074900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12406341..12410264) extracted from Lotus japonicus Gifu genome v1.2.
TCGTTTTGTCACACCTACCCACCTCAGACTCTCTATTTTTTATTTTTCTTGAAAAATTGACATGGTAGTATTATTTTCCC CCTAATTCAATTATTCAAACAAATCAACCTCCATAACCATAGCCACTTGTCCCAAAGTTGAAACTGTAACCGCAGTTTCT TCATCATCACAACTGAAACTGAAACTGAAACTGAAACTGAAAATCAAAACCCCCCGGCCCCAATCATCATGGCTGATGAT ACTTTTCTTCTCAGCAACACTGACCTTCGACGTCTCAGCCTCATCGACTTCTCTTCCGCCGACGATTCTCTCATCGCCAC CAGTCCCCAACATTCAGGTCCTTCCTTCGAAGATGCCGCCATCAAACTCCGAGAATGGGAGCAGGAACCTCAACCAAATG AGACTCAATCGCCGGAGAAAACTAGCAAGTGCAATTTGCGGGCCAGTTTGGCTTGGGATAAAGCATTTTTCACTAGTGCT GGTTCGTTAATTGTTATTGTTAATCACCATCAATTCCATCAATGTTGCTGTTACTTTGGCGCAATTTTCACAAACAATTT TATATTGTTAGTTTTTGATTTTGTGTGTGTTTTGTGTATGAATGATTAAATGGGGTGTTCAGGTGTTTTGGATCCTGAGG AGTTGAGTAGTATGATTGAGAAGAAGGGTGAGAAGCTTGCGTTGGCGTTACCGGGGATTCAAGAGGATGTGCAGGGGTCA TGTGAGTCTTTCTCTACCTTTGAAAGTGATAGCTTGACCCTGGAGAGTTTAGAGGCTGATTTGTTTGGGGATGTTAGAGC TTCTATTCAGAAATCCAGTAGCAGGGTGTCTAATGAGGCTAGTGTGAACAGCAAAGCCAGAGTTCCATCACCAAGGTTTC GAACTGATCGCTGTGAGTCTTTGTTTTTTATCTGCACCATGGACTTGGTAGTTGTTGTTGTTGGTATTGGCCAATTGTTG CTAGCATCCTTGCAGTCTGTTAGTTTCTGTTGGTGTGTCCAATTTGTGAACTGTGAAGAAAGCATGGATTTACACTTTAC ATAGATAGCTAAACTAGTTCAGGTTCAGTAGATTTTTTTTCTTCTAGGAGAATCTTGTGTGCTTCATACTTTAGCAGCCT CAATCTCTACTTGCCATAACCAATTACCAACAGCAGCACAATTATCACAAGTATCAAAATCTTTTGCTGCTGTCCTATTG ATTATTACTGTTAAGCAAACTCCTTTCTCCCGGACAAATATATATATAGAGAATTGAGAGATATACACCATGATAAAAAT ATGAGCAATGAAGGGAATATGATGTGGTGAATGTGTAAAGTTATGGCCATTTTCCTTCATAGCAAATATTTTATCCGTAG CTCATCTTTTTGTTATTTACTAACTTCCCTGGAAAAGAAATATCCTCCCAACTTGCGCGTGATGACATAAGTCAAGGATT GCTTCTCCTGCTGTGTTCATGTAAATGTGATCTGACAGTGAGATTTCACTCTTAGTTTTATTGGAAATTGGTACGAGACT TGTAGTTGTTAGGACATGGAATGACTGATTATCAAATACTTTCATCTTGTGTTTGCACTTTCTGAAAAGTTAGGAGCTAG GAGGTTGAATTTTATTTAATTTACTCTGCTTATGTTGTGGGGCACTGATTTACCTTTGATTGGTCAAATTAAACTATTTC TTGATTTTCATTTCAGTTTCAAAAAGGGATGGCATGGCTTCTTGTAATAAGGTAAATTGGATTGGTGAATGGACCAGAAA TATTTAGCATATATTTTTTAATAGTTTCTTTTTTATCCGAAGAATAGTTCAAGAAAATGATTGCAATAACTATTGATTTT GGATGAAGATCCCATCTTCTAAGAGTCCAAGTGCTGTCATGCAAGGAGCAGGGAAGCTGACAAAGAAGAGTCCTATTTTT TCACAACTTCCCGGGGTACGTAACTAAAGAAAACCATCAAAGAGACTTGTGCTGTGGTTCTCTACTTATGCTAGCTGATA CATTTGCAGAGAACTAAAGCAGCCATAGATCATGAAACTGAATTTTAGTGGCTTATGTGTCTGATAGTATTTTTTCTTTT TCAAAGACGCCTGTTGCTAGTAGGGAAGAGCCGTCTATCTTAAAGCAATCAAAGCTACTAGGAAAGTCTACTCCAAGTTC AACAATTTCATCCAAGAGAGCTTCCCCTAGCAATCTGCATGTCAAAAGTGAAAATGACAAAGCAAAAGGATTAATCGGTG GTTAGAACTTGTTTCAGTATATCTTTTTTCCTCTCATTTGGTTATAGTGATTGCCTTTTTCTCAATTGTTTTTCACTTTT AACTATAGTCAGTCTTTTCAGGTAAGGTCAATTCCATGACTAGCACACCTGTTTTTAAGGGCTCTCAAGTCATTGTACCT AAACCCACCATATCATCCAAATCCCCTTCAGGTCTGTCAGGTGCAACGAAAACAAAACCTAGAATTTCTACATCTTCCGG TAGCAACCTATCTGGTAGTATTGGTAAATCACTGTCAAATTCGTTATCTGGTAACATTGGAAAATCACCATCAAATTCCT TGAAAAGAAAAGTTGATGCTGGAACCAAAAAGCTCTCTCCTTCCTCAGTTGCCAGAACACCATTAAGAAATGCTTCAAGA GATAAAATTGGGTCTAGCAATTCTAGTCTTTCAGGCTTGATGTCTGTTACTAAACTCTCTTCTAGTATTTCTCCTGCTAG CTCTATTAGCAACTGGTCTTCAGAGTCCTCGTCATCAACTTCTATGGTTAAATATAGGTCTAATAGGTTAAGGACTAGTT TCGATAGTAGCTCTAGCAGAAAAGACTTATCAGATATCGATGCTCAACAATGTTCAAATTCTCAAAATCCTGAGAGTGCT TCAAGTGTAGAAAGGAAAAAGACTCAGCCTATCTTTCAGAGTGTAAGGACTGCTGCTTCAGGAATGGTTACTTCTCCATC TCCTCCTCAGAAACCTTCTCGCATTCGACTACCATCACCAAAGATCGGCTTCTTTGATGGCGTAGGTTTTGTATTGTTTT GTTGATATTTTATATTTTTATGAACTCATCTTTTCAGTACAATTTTCTTGGGGACATTCATGAAATGTGCTTCTGTTAAT TGTTTTTTTCCCATTAATACTTTCTTCATCTTTCCATTACCTCCCATTTGTTATATCGGTATTATTATGTTATGCAGGCA CGCACTCCTCGTCGGAGAATGCAACCACCCACTGCTGTATCACATAGCTTGCCCGGACATGGAACAGGAAGTTTCAGTCC ATCTCCAAGTGAAGGCCAAAACAAAACAAAGCTCCGAAAGCTGCAACCATCAGTCACATCAATTGATAACAAAAAATTCA ATGACCAGCATACATCGAATCCAGTTCCTCTTCATGAATCATTAGATGTTGCAATTAAGTCACCTACGGCATTGAAACAT GACAAAAGCTCTTGTGTAGCAACCATGGAAGTTCAAAATGAAACGCATCTTAAAGCTGGTGTAGTTAACTTGGACTCCAA TGATACCATGGCTGGAGGGAACCTTATACATGACCTGAATCTTGGTTCTACACAGGAAAATTCTCACTGTGATGATCAAG TTGATTGTTTGAGCAGACAAGTTGGACTTCTGGATATAAATTAGGAAGCACAAAGCATATTCTGGTATGCCAGTTTGCAG AAGGAGATACTATGATGTGAATGATTCCTTGGGCAATGTGGTGGCTTGGCAAATGCTTTCACAACAATTGTCTGAGAGCA TCATTACAGGAAAACTGGGTGATCAAAAGAAGTTAAACTATACATTCTTTGATTTTTTTTATATTGAAACTGAAATTGTA GAAGGTGAATTTTGATGTACTCGATCCTACTCTGGCTATTGAATAAAAAGATTTCATCATTATGAAGCACTTATTTTAGT TTGG
CDS sequence (LotjaGi5g1v0074900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGATACTTTTCTTCTCAGCAACACTGACCTTCGACGTCTCAGCCTCATCGACTTCTCTTCCGCCGACGATTC TCTCATCGCCACCAGTCCCCAACATTCAGGTCCTTCCTTCGAAGATGCCGCCATCAAACTCCGAGAATGGGAGCAGGAAC CTCAACCAAATGAGACTCAATCGCCGGAGAAAACTAGCAAGTGCAATTTGCGGGCCAGTTTGGCTTGGGATAAAGCATTT TTCACTAGTGCTGGTGTTTTGGATCCTGAGGAGTTGAGTAGTATGATTGAGAAGAAGGGTGAGAAGCTTGCGTTGGCGTT ACCGGGGATTCAAGAGGATGTGCAGGGGTCATGTGAGTCTTTCTCTACCTTTGAAAGTGATAGCTTGACCCTGGAGAGTT TAGAGGCTGATTTGTTTGGGGATGTTAGAGCTTCTATTCAGAAATCCAGTAGCAGGGTGTCTAATGAGGCTAGTGTGAAC AGCAAAGCCAGAGTTCCATCACCAAGGTTTCGAACTGATCGCTTTTCAAAAAGGGATGGCATGGCTTCTTGTAATAAGAT CCCATCTTCTAAGAGTCCAAGTGCTGTCATGCAAGGAGCAGGGAAGCTGACAAAGAAGAGTCCTATTTTTTCACAACTTC CCGGGACGCCTGTTGCTAGTAGGGAAGAGCCGTCTATCTTAAAGCAATCAAAGCTACTAGGAAAGTCTACTCCAAGTTCA ACAATTTCATCCAAGAGAGCTTCCCCTAGCAATCTGCATGTCAAAAGTGAAAATGACAAAGCAAAAGGATTAATCGGTGG TAAGGTCAATTCCATGACTAGCACACCTGTTTTTAAGGGCTCTCAAGTCATTGTACCTAAACCCACCATATCATCCAAAT CCCCTTCAGGTCTGTCAGGTGCAACGAAAACAAAACCTAGAATTTCTACATCTTCCGGTAGCAACCTATCTGGTAGTATT GGTAAATCACTGTCAAATTCGTTATCTGGTAACATTGGAAAATCACCATCAAATTCCTTGAAAAGAAAAGTTGATGCTGG AACCAAAAAGCTCTCTCCTTCCTCAGTTGCCAGAACACCATTAAGAAATGCTTCAAGAGATAAAATTGGGTCTAGCAATT CTAGTCTTTCAGGCTTGATGTCTGTTACTAAACTCTCTTCTAGTATTTCTCCTGCTAGCTCTATTAGCAACTGGTCTTCA GAGTCCTCGTCATCAACTTCTATGGTTAAATATAGGTCTAATAGGTTAAGGACTAGTTTCGATAGTAGCTCTAGCAGAAA AGACTTATCAGATATCGATGCTCAACAATGTTCAAATTCTCAAAATCCTGAGAGTGCTTCAAGTGTAGAAAGGAAAAAGA CTCAGCCTATCTTTCAGAGTGTAAGGACTGCTGCTTCAGGAATGGTTACTTCTCCATCTCCTCCTCAGAAACCTTCTCGC ATTCGACTACCATCACCAAAGATCGGCTTCTTTGATGGCGCACGCACTCCTCGTCGGAGAATGCAACCACCCACTGCTGT ATCACATAGCTTGCCCGGACATGGAACAGGAAGTTTCAGTCCATCTCCAAGTGAAGGCCAAAACAAAACAAAGCTCCGAA AGCTGCAACCATCAGTCACATCAATTGATAACAAAAAATTCAATGACCAGCATACATCGAATCCAGTTCCTCTTCATGAA TCATTAGATGTTGCAATTAAGTCACCTACGGCATTGAAACATGACAAAAGCTCTTGTGTAGCAACCATGGAAGTTCAAAA TGAAACGCATCTTAAAGCTGGTGTAGTTAACTTGGACTCCAATGATACCATGGCTGGAGGGAACCTTATACATGACCTGA ATCTTGGTTCTACACAGGAAAATTCTCACTGTGATGATCAAGTTGATTGTTTGAGCAGACAAGTTGGACTTCTGGATATA AATTAG
Protein sequence (LotjaGi5g1v0074900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADDTFLLSNTDLRRLSLIDFSSADDSLIATSPQHSGPSFEDAAIKLREWEQEPQPNETQSPEKTSKCNLRASLAWDKAF FTSAGVLDPEELSSMIEKKGEKLALALPGIQEDVQGSCESFSTFESDSLTLESLEADLFGDVRASIQKSSSRVSNEASVN SKARVPSPRFRTDRFSKRDGMASCNKIPSSKSPSAVMQGAGKLTKKSPIFSQLPGTPVASREEPSILKQSKLLGKSTPSS TISSKRASPSNLHVKSENDKAKGLIGGKVNSMTSTPVFKGSQVIVPKPTISSKSPSGLSGATKTKPRISTSSGSNLSGSI GKSLSNSLSGNIGKSPSNSLKRKVDAGTKKLSPSSVARTPLRNASRDKIGSSNSSLSGLMSVTKLSSSISPASSISNWSS ESSSSTSMVKYRSNRLRTSFDSSSSRKDLSDIDAQQCSNSQNPESASSVERKKTQPIFQSVRTAASGMVTSPSPPQKPSR IRLPSPKIGFFDGARTPRRRMQPPTAVSHSLPGHGTGSFSPSPSEGQNKTKLRKLQPSVTSIDNKKFNDQHTSNPVPLHE SLDVAIKSPTALKHDKSSCVATMEVQNETHLKAGVVNLDSNDTMAGGNLIHDLNLGSTQENSHCDDQVDCLSRQVGLLDI N
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 626 | 613 | 1.2E-106 | – | |
| PANTHER | 14 | 626 | 613 | 1.2E-106 | – | |
| MobiDBLite | 150 | 377 | 228 | - | – | |
| MobiDBLite | 183 | 197 | 15 | - | – | |
| MobiDBLite | 230 | 251 | 22 | - | – | |
| MobiDBLite | 268 | 342 | 75 | - | – | |
| MobiDBLite | 352 | 377 | 26 | - | – | |
| MobiDBLite | 390 | 420 | 31 | - | – | |
| MobiDBLite | 390 | 556 | 167 | - | – | |
| MobiDBLite | 429 | 476 | 48 | - | – | |
| MobiDBLite | 509 | 556 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0074900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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