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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0106700 |
| Transcript ID | LotjaGi5g1v0106700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit; TAIR: AT5G06510.1 nuclear factor Y, subunit A10; Swiss-Prot: sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10; TrEMBL-Plants: tr|B3IX33|B3IX33_LOTJA Transcription factor CCAAT; Found in the gene: LotjaGi5g1v0106700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20176121..20180745) extracted from Lotus japonicus Gifu genome v1.2.
TATCAACTTGGTTCCTAAAAGATTTTTCCGCTAGCAAGTTAACCTTTGAAAAATTGAAATACATTCGAAAATTCTGAATG AGTAAAACGTCAATCAAGTTAATGTGTAGTTGACCAAATCTGAGCGTAGAGACTAACTTGACCGACTTTTTATACTACAC ATTAAGTATTTATGAGTATATTTTCTTTTTCTAGTGATAAAAACTTTTATACTCATACATCAATTTCACCATTCACTCTA TTTTGTCCGTATTCTTAAAACAATGTATTATTAATTATTCAAAAAATTAGTGACAAATGTTGAATCACTAAATGGTGTAG AGTATGGAAGGAAGAGCATTGAGTTAGAGTGAGTTTACAAATAAAAAATAGAATAACATAGTACTAAAAGGATGGTTGAG TTCCATATGATCAATGAATGCCAAAGTTCATTGGTGGTTTTGGCTCCAACTTCCATTACGCTTGTACGCTAATTCCTTTC TTCTCCCTATTCCACACTCTCTTTGTTTGTTGTTTTTTGACAATAACTCTCTTTGTTTGTTGATTCCTCTGTTTGTGTGT ATAAGTGTGTGGATTTGTGCATTTCCTTCATATTTTAGTACCGACATGACTCCAGCCTAATGGGGATTTATCTTCTTCTT CTTCTTTGTAGAAACCGATGCTGCTATTCATTCCCGTGCTTTTACCACTCACTCTGACAAGTGAGTCCTCTTCTCCCTTT CTTTAGTTCTGTTTCTTCTTTTTCTCTTCTCCCTTTCATGCTCCATTTTAGGAGCATTATAAAGTTCAAGTCCTTATGGC TAGGACTTTCTGTAATAACCACTTTAACTTGTTTTTCTTGAGTTTTTAGTGATAAGTTATGTAAATTCAAGCTTTGTATT GATGATTTTCTGTTTTTTTATCTTTTATGCTTTAATTTTCAGCTAGTCTCTCTTGATGTTCATGCTGAAGACTGGATAAA AGTCTTGAGGTAGAGCCATGGTTATCAGCGATCTTCATAACTATGAATTAAACATTTTTTAATGCTATTAGACAACCAGA CAGTGCAGCCACCCAACGGACAGCCACCCAACAGACACCCCTATTTTTCTTTTTACATCTCTTCTTATCACATCATCATA TATTACATCCATTATTTTCTCTTTTTCATCATTTCTCATTCTGGATGTCTGTTGAATAACTGCATGCAATGTATCTACGA ATTATTTTCTTTTTAACCGAGTCTTATTATTTTTTACTTCTGTTGGTAACTAACTACTTTTCAATGTTTGCTACAGGAAG CAGTTTAGTTTTTTAACTTGGTGTAACAATTAGTCCTTTGTTTTGGAGCATTTTGGAGCCTAATCCCTAGACATGGCGAT GCAAACTGTTTATCTGAAAGAACATGAAGGAATGGGCCACAGTTCTGTTGGACAGTTGTCATCTGTGACTTCAGCACCAT GGTGGGGGTCTCAATCAGTTTATGGAGACTCTTGTGGTCAGATCAAACCCTTTTCATTGGAGTTTTCCAACTACGTGGAC CACTTTGCTGCCAATAAGAACTCAGTACGAGGAGCTGAGCAATTGTTTGATAAAGGACTTACAACCCAGTTTACTATCTT TTCAGGTACTTAAATGTAATGTAATTTTCGGTGGATGTCTCTGTTAGAGTTCCATAGCTATCTACTCTTGTTTATGCCAG AGTTTTTGAAATAGTTGTGATTGTACATTATTGATTGATATCTCAAATACTACCTTTTTATTAGGCTTCACCGTGAGGGG GTGTGTTAAGGTCTCACATTGACTAGAGATAACCAAAATAGTCCTTATATATGGTAGAGAAAACCTAGCTATTCAGCTTC CTTTTTGCGGTAGAGTTAGGCCTAAATCATCCTTCTGCTATAATTTTTTAGAGATTCATATCATCTGAGGGGATCAGGAT CATTTTTAAATTGTGTTTATTTCTCTTTATATTTATGAAGATCGAAATATACACAAAGTTTCATATAACACTGTCATTGT CATTTGACATGAGATCCGAGATGATCTTAGTCCTATCTGATATGACTTACAATAATGAAATATGTAAATGATACAATTTG CCTACTATAAATTCTAGGTTGTGGGAGACAGCAAATTAAAAAATTATCATTGTGTAAGTTAAGTTCAATTATGGATCCCC TCCAATCTCTTGTACATATAATCAGTAATTGTCATGAAGTTATGTATTCTGCCATAACAACAAAAGAACAAAGAGGGTTT AGGCAGATAAACTAACTAGCTACCTCAAAAAAAAAACTTGAAAATGATCTCTTATGATGATTATTCTGCTGCATCAAACA AAAGATCTTTTATCAATTTTTTTGAAGTGAGAAACTTTGCTACATTGGATACTAGAACTTTCCACCCTCTGACCATTCTG ACATTTCCTCTTCAGATGATTGTAAAATGTCAGGTGAAGCACAAAACCTTGAGGCAACCTTATCACTGCAGCCATCAGTC ACCGTTGCTGAGCCGCGTAACCGTTTCGAGCTCGGGTTCAATCAGCCTATGGTAAAGCTTCTCACACAACAATCTCTTTG ATGTTTTAGTATTTTATTTCTGCTGCACATTAATTCATTATGCTTGGTGCCCTTTCCTTGCTAGATCTGTGCAAAATATC CTTACATGGATCAATTTTACGGGCTCTTCTCAGCTTATGGACCTCAAATTCCGGTTTGTTTTTACCTCAACCATTTTCTC AGTCTATGTAAATCATAGTGTATCAATATGCCTAAAGTGAATTTGTTTTTCTGCTGTAAATTATTCCCTGTGTTTATGAA CTCATTTATGTATCCATGTTTAATAAATTAGGGACGTATGATGCTTCCACTTAACTTGTCAACTGACGATGGACCGATTT ACGTGAATGCTAAGCAGTACCATGGCATTATCAGACGCAGGCAATCACGTGCAAAAGCTGTGCAAGAAAATAAATTGATC AAACGTAGCAAGGTATGAACCCTCATACAGGTTTCTCAAACATTTTGCCATGATAAATAATAAGTATAGTGTAACCTTGA AACAATGTAGTTGTAATAGAATGTTTTGACCAAACTTATGTGGAAAGTGTTACACTATCATTGTCAGGCTTCATAGTCAT GATTGCTTCTAAAAACATGACAAGAGACACTGGAGGAAGAGCACTTTGTGCATTCCATAGCAATTCACTTTTATTCTTTT GGACAGAAATCCTGTGTCCCGGTTCGGAGTACCCCTCCCTGTTCCACCTATCACATTGCACCCTGTTAATTAAAAAAAAT GAGTATGAGTAGTTTTAAAATGATATGGAATATTGCAATTGGTGGGACAGGAAATGAGACATCAAATAGGGACTAATGAT CTTAAATTCTTAATCTATTCTTGTGTTGTGTCAAATAGAAATGATATGAGGATAAGATATGAGACAGGTAAGTTGGAATT AAAAAGGCAACTTATGTTCAAGTCTCCAAGATCAAGTATTGAACTTTTATTACAACCAAAGATTGTGCTGAAAAACATCA ACATGCTACTCCTTTATTCAGTTAAAAGAAAAATTACTTACATTTACCCCCCTGATGACAATGTTTGACTACTTTTGAAA TAGTATTTTTTTTTTCCATTTGCCCCTTTTACACCTATTGAAGTTTTGGTGTTTGTTATGCAGCCATATATGCACGAATC GCGCCATCTACATGCAATGCGCCGGCCAAGGGGATGTGGTGGTCGGTTCTTGAACACAAGAAACTCTTCTGATGGAAATG GTAAAAGTGGAAGTGAACTGCATAAGAAAACTGGTGGCCTTGGCCGACATATGCAGTCCAGTGCCTCTCAGAGTTCTGAA GTCTTGCAATCTGAAGTTGGAACTTTAAACTCATCAAAGGAGACAAATGGAAGCAGTCCAAACATCTCAGGGTCAGAGGT GACCAGCATGTATTCACTGGGGGGTCTTGACAGCTTCGCTGTCAATCATCTTGGATCTGCCATCCACCACTCTCTGGCGG ACATGATCGATGGTGGGCATGGTATCATTATGCCCACAAAATGGGTTGGAGCAGCAGGAAGCTGCTTCAACCTTAAAGTC TGATCGGAAAGGACACAAGTGGGATTGATGCAAATTGGTGAAATATGTTTGCATCAAACCCGTCCTTTCTTCGACTTGAT GGAGAAGTTCTGTTGCAGTTTCATGTGTTTACTGTGACAAGTTCAGTTCTACATCTCGTTTGAAGGCAACTCATTCTTGG CTATGGTGCTTAGGAAATCCATCCTTGGCTCTCATTATATGTTATAGTACTGTCCTTTTCTTTCTGCAAAGCCCTGCCAG TGGCATTGGTGGACATTGTATTGGCTTGATATCCTGATTTAGTAGACTATGATGTGTCTGTCTGTGTTAGAATAAAAGCA TGACTAGCTACATGTGTGTGTTTTTAATCATGTCTAAGTGTGGTCTTTTGTTCTGTACTTCTGTATTTCTGACTTTGTGG AGCAATGTAACATAGAACTTTGTTATAATAAAACATTAATCTCCTCACAGATGCGAAATTTCTTTCTTACTCTTTTGAAG GAAAAACAAGATAGAAAGACTCAAGACATTCAAAAAAAAACTCACTTGTTTTGGAATTCATGGCT
CDS sequence (LotjaGi5g1v0106700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATGCAAACTGTTTATCTGAAAGAACATGAAGGAATGGGCCACAGTTCTGTTGGACAGTTGTCATCTGTGACTTC AGCACCATGGTGGGGGTCTCAATCAGTTTATGGAGACTCTTGTGGTCAGATCAAACCCTTTTCATTGGAGTTTTCCAACT ACGTGGACCACTTTGCTGCCAATAAGAACTCAGTACGAGGAGCTGAGCAATTGTTTGATAAAGGACTTACAACCCAGTTT ACTATCTTTTCAGATGATTGTAAAATGTCAGGTGAAGCACAAAACCTTGAGGCAACCTTATCACTGCAGCCATCAGTCAC CGTTGCTGAGCCGCGTAACCGTTTCGAGCTCGGGTTCAATCAGCCTATGATCTGTGCAAAATATCCTTACATGGATCAAT TTTACGGGCTCTTCTCAGCTTATGGACCTCAAATTCCGGGACGTATGATGCTTCCACTTAACTTGTCAACTGACGATGGA CCGATTTACGTGAATGCTAAGCAGTACCATGGCATTATCAGACGCAGGCAATCACGTGCAAAAGCTGTGCAAGAAAATAA ATTGATCAAACGTAGCAAGCCATATATGCACGAATCGCGCCATCTACATGCAATGCGCCGGCCAAGGGGATGTGGTGGTC GGTTCTTGAACACAAGAAACTCTTCTGATGGAAATGGTAAAAGTGGAAGTGAACTGCATAAGAAAACTGGTGGCCTTGGC CGACATATGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCTTGCAATCTGAAGTTGGAACTTTAAACTCATCAAAGGAGAC AAATGGAAGCAGTCCAAACATCTCAGGGTCAGAGGTGACCAGCATGTATTCACTGGGGGGTCTTGACAGCTTCGCTGTCA ATCATCTTGGATCTGCCATCCACCACTCTCTGGCGGACATGATCGATGGTGGGCATGGTATCATTATGCCCACAAAATGG GTTGGAGCAGCAGGAAGCTGCTTCAACCTTAAAGTCTGA
Protein sequence (LotjaGi5g1v0106700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMQTVYLKEHEGMGHSSVGQLSSVTSAPWWGSQSVYGDSCGQIKPFSLEFSNYVDHFAANKNSVRGAEQLFDKGLTTQF TIFSDDCKMSGEAQNLEATLSLQPSVTVAEPRNRFELGFNQPMICAKYPYMDQFYGLFSAYGPQIPGRMMLPLNLSTDDG PIYVNAKQYHGIIRRRQSRAKAVQENKLIKRSKPYMHESRHLHAMRRPRGCGGRFLNTRNSSDGNGKSGSELHKKTGGLG RHMQSSASQSSEVLQSEVGTLNSSKETNGSSPNISGSEVTSMYSLGGLDSFAVNHLGSAIHHSLADMIDGGHGIIMPTKW VGAAGSCFNLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 324 | 320 | 1.1E-169 | – | |
| PANTHER | 5 | 324 | 320 | 1.1E-169 | ||
| SMART | 157 | 218 | 62 | 1.5E-35 | ||
| ProSiteProfiles | 158 | 218 | 61 | 35.76 | ||
| PRINTS | 161 | 183 | 23 | 3.6E-22 | ||
| Pfam | 161 | 215 | 55 | 1.6E-25 | ||
| PRINTS | 192 | 215 | 24 | 3.6E-22 | ||
| MobiDBLite | 206 | 275 | 70 | - | – | |
| MobiDBLite | 241 | 275 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0106700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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