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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0300200 |
| Transcript ID | LotjaGi5g1v0300200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PAR1 protein; TAIR: AT5G52390.1 PAR1 protein; Swiss-Prot: sp|B7VJP8|RDGC_VIBTL Recombination-associated protein RdgC; TrEMBL-Plants: tr|I3SN32|I3SN32_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0300200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61735160..61739805) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGTAGGCAGGGATCCACTATAACTGCCATTGTAAAACCATTATAAAAACACAAGCCCCATCAAACCTCATAACATCC ATTCCTCCAAACTCAAACACAAGTTACCAAAGCCTCTTCTTCTGCTTGAAGCCATGGCCTCTAACTTTAGCTTGATGAGT TTGGCAATACTTGCCCTCACATTTTCTCTCGCCGTGCAAGGCACTCTTGGTAAGTCTCCAAAACCTCTCAAATAATCTCT TAAACAAGCACACACATGACACATATGACTAATGAAATTCTTAATTCTTGTTCTTACAATCTAAACATCATAGTTAATGT TGAAATTAACATTGTTGCAGGAGGGATAGAATGTGAGAATCTGAGCGAGGAAACGTGCTCATTTGCCGTGTCATCTGGTG GAAAACGCTGTGTGCTTGAGAAGCGTGTGAAGAGAACAGGGGAGGAAGCATACACATGCAGGACATCTGAGATTGAAGCT GATAAATTGAAGGATCACATTGAAACTGAGCAGTGCGTCAAGGCTTGTGGATTGGACAGAAAATCCCTTGGAATCTCATC AGATTCTCTTCTTGAGTCCCGCTTCACTCACCAGCTTTGTTCCCCTCAGTGCTACCAGAGTTGCCCAAATGTTGTTGACT TATACTTCAATCTTGCAGCTGGTGAAGGTAACCAAAACAAAACATTTATGTTAAAAGGTCTTGCATTGATCAGAGAAATG GTCAAAAAACGATTAAGTCTACTTGAAAACTCATTTGAAAAACACACTAAAGCCAAAAGCATGGTAGTTTGTTTTTATTC ACCACTATGTGTTGCCTTCAAACAAGTTTTCAAAGATGCATTTAGGACAACTTTTCATTTATGAGCTAACTTTTGATATT AAGTTAGACTCATTTGGAAGAACTTATCATATGACTATGCATAAGCGCTTATAGAAGTGTTGAAGAGCTTATGTAGATTG TTTTAGATAAGCAAGAGCTTATGTAGATAGGTTTTTTTTTTTTGAAATTTTATGTAGATAGATTACAACCTACCTATAAG TTGTTTTGAACTTATTTTCGTAATTTATTCAGATTAATTCATGAGTGAGAGCTTATGCCTACTTATAACTTAATTTCACT TATTTCAAAAAGTTTCTCAAATTAACTAATAAAGAAGTTTTATAAGCACTTAATTAAGTTATTTACCCAAAATCACTTCA AAGCCCAATTGGGACATAGATGTGAGATATGTCAAAGTAAAAAGGGTAGAGAGGTAATTTCCTCATGAATAACCTTTTTA AGGTTTAATTAGGGTAAACTTGATTAAATTCTCAAGACATGTGCACATTCAACATATAGAATATGGTTGATTATGTAAAC AATATAAGTGTCATGCCTCACAAGATAATTTCCAATAAATTGTTCCAAATATGTTATATAGGTGTTGAGCATGAGCATTT TGTTGTGTGTTTGTAGGTGTGTTTCTTCCTATGTTGTGTGAAGCAGAAGGTGGGAATGCTCGTCGAGGAATGGCTGAACT CAAAAGCTCTGGCATTGTGGCACCAGGACCTGTTCACTTTGTGCAGTTTTTAGCTACACCTCCAGAGCCATTTAACCCTG TGGAGTTCGCAGCTGAGCCTGCGGCTACCCCATCATACCCACCATACTAAGTTGTAGTTTTTAGAGCATGCAAAAAAATT GAGTGGCATAATAAACAACTCAACGTCTTATTATTAAACAGGTTGAGTTCAGAGGCACACCATGTTTAGTTTGTAATAGC TAATGAAGTTGTTCCTACATATTTTGCTGGCAGTGGTGGATCTTCTCATAGTACCAATAAGGTGTGGCATCCACAATATT AGAGAAATAAAATTGCTGGTTATAATTAGAGACGTGTCTCTTATTCTGATCACATTGAGATAGCCCCTAATGAAAACGGC TTCTCGAATAAATTTCAATAAATAAGGGTCACCAGAAAACAGAAAGAAAATTTGAATTCGGATTTTAGCAAACCTCGCAT GAACTTCAATAATTCAATGAGTGAATGTTGTAACAGGATTTTTCGATTCAAATTAACCGCAATTAAAACACCAAAATCAC CACAGCTATATGAATTACTAGTCCTCTTTTGGTGCAAACTTTCCAGAGCAAAAACATATAAAATGTTGGATTGAAGTTAA TGGGAATCTCATTAAACCCGCAAAAAAATGTAACTTAGTACTACTAAGCATAAAAAAACATAAGCAGCAACTGATTCAAT CCAAGAGCTGAATATATCCAAGTCATCATTTTAATATCTAGGTCAATCCAGAAATTAAAACTGCATCATCATCTTAACAA TTATAACAGAAACATGCAGAAAAATAAAGACCCACCCTACAAACTAACATATCAGAAACCCCCTGAAAAAGGTATTCAGG TTGAGGGAGAAAAAGACAACATATGGCAAAAGTCTCATCATAACACACACACAGACAAAAACACCATTCAAAACATTACA ACTAAGAATCCTCCTCCTGAACTTCATCCTCATCTTCATAGTCATACCCCTCATCATCTGCAGTTGCATCCTGGTACTGC TGGTACTCCGAGACAAGGTCGTTCATGTTGCTCTCTGCCTCAGTGAACTCCATCTCATCCATACCCTCTCCGGTGTACCA ATGCAAGAAAGCCTTCCTGCGGAACATAGCTGTGAACTGCTCACTCACCCTCCGGAACATCTCTTGAATGGATGTGGAGT TGCCAATGAAGGTGGAAGCCATTTTGAGACCAGTTGGAGGGATGTCACAGACAGTGGACTTAACATTGTTGGGGATCCAC TCGACAAAGTAGGAGGAATTCTTGTTCTGGACATTGATCATCTGCTCATCAACCTCCTTGGTGCTCATCTTCCCACGGAA CATGGCAGAAGCTGTCAAGTAACGACCGTGTCGAGGATCAGCTGCGCACATCATGTTCTTGGCATCCCACATTTGTTGGG TCAACTCAGGCACAGTGAGGGCCCTGTACTGCTGTGATCCACGTGATGTGAGTGGGGCAAATCCCACCATGAAGAAATGC AGACGAGGGAAGGGAATGAGATTCACGGCCAGCTTCCGCAGATCAGAATTGAGTTGACCAGGGAATCGAAGACAGCATGT CACACCACTCATGGTGGCTGAAATGAGATGGTTCAAATCTCCAACTGCAACCAAACAACAAAAACAAAAAACCCAATTAG TTGATTTTAATCACAAAGCAATGCAAGCAAATATAGAAATAGTGCAAACATGAGTTGATGTGAACATACAGCTTGGAGTA GTGAGCTTAAGGGTTCGGAAGCAGATATCATAAAGAGCTTCATTATCCAACACCATGCATTCATCAGCGTTCTCAACAAG CTGGTGCACAGAGAGTGTGGCATTGTAAGGCTCAACAACAGTGTCAGATACCTTAGGCGATGGGAACACAGAGAAAGTGA GCATCATTCGATCAGGGTACTCTTCTCTGATCTTGGAAATCAAAAGTGTTCCCATTCCGGAACCAGTTCCACCACCAAGA GAGTGGCAAACCTGAAACCCTGAAAGAGTAAACCAGAAATGTTAAGAACCCTATTTACAAGCCAATAAAACAGTGAATAA CTCAATCAATGCATGCATGGAACATTTCTACAAACTGTGAAATAAATTCACATATCAACAAATATGGTAGTTCATCCTGA TTTCACAAATCTCACACCAACTTCAATTGAAAAATAACTGTTCATACAGTAGCATAATCAAGTTTGTAAGAACTACCAAA CTTCAAAATCAGCACAAACAAACGCTATTCACCAGATCAAGGTCCCATACTCTACGATTTAACTTCAAAACTTGATAACA CAGCGAGATTTGCAACTCAGAGTTCATCATTTTCATTCAAAACGCAGAGATCACTAAATCGTTAACAAACAAACAAGAAA ATCATCAACAACTAAAAATCAAATTGAAAAATAAACCGTAAACACAGAGTATACAACATTGTGGAGAAACAAACTGCAGA AAAAATTCAAAAAACAAAACCCTAAAATCTCAAAAAAACTTGGATCAGAAATTGAAGTGAAGTAGTAAACAATACCTTGA AGGCAATCACAGTTCTCAGCCTCCTTTCTGACCACATCGAGGACCGAGTCAATCAACTCAGCCCCCTCGGTGTAGTGACC CTTAGCCCAGTTGTTTCCGGCGCCGGACTGTCCGAAAACAAAGTTATCCGGCCGGAAAATCTGGCCGTATGGACCAGATC TGACACTGTCCATGGTGCCAGGCTCCAGATCCATGAGCACCGCCCTAGGTACAAACCTCCCGCAACTCGCTTCATTGTAG TAGACATTGACTCGCTCGAGTTGCATGTCAGTGTTCCCCTGGTACCTTCCGGTGGAGTCGATCCCGTGCTCCGCGCACAC CACCTCCCAGAACTTTGCTCCGATCTGGTTCCCGCATTGTCCTCCCTGGATGTGAAGAATCTCACGCATTTTGACTGAGT TCGGAGAACGAGTTTTAGAGAGAGAGAGAGGTGAGTGACGGAGCGAGTTCTAGAGAGAGAAAAGCAGAAAATGATGTCAG CGGGTCTGTGAAGTGAGAGGGAACAAGAATGACTGAAAGAGGTTCTTTATAGATGGGATGTGACGGGACCGTGACGGCGT TAGGCG
CDS sequence (LotjaGi5g1v0300200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTAACTTTAGCTTGATGAGTTTGGCAATACTTGCCCTCACATTTTCTCTCGCCGTGCAAGGCACTCTTGGAGG GATAGAATGTGAGAATCTGAGCGAGGAAACGTGCTCATTTGCCGTGTCATCTGGTGGAAAACGCTGTGTGCTTGAGAAGC GTGTGAAGAGAACAGGGGAGGAAGCATACACATGCAGGACATCTGAGATTGAAGCTGATAAATTGAAGGATCACATTGAA ACTGAGCAGTGCGTCAAGGCTTGTGGATTGGACAGAAAATCCCTTGGAATCTCATCAGATTCTCTTCTTGAGTCCCGCTT CACTCACCAGCTTTGTTCCCCTCAGTGCTACCAGAGTTGCCCAAATGTTGTTGACTTATACTTCAATCTTGCAGCTGGTG AAGGTGTGTTTCTTCCTATGTTGTGTGAAGCAGAAGGTGGGAATGCTCGTCGAGGAATGGCTGAACTCAAAAGCTCTGGC ATTGTGGCACCAGGACCTGTTCACTTTGTGCAGTTTTTAGCTACACCTCCAGAGCCATTTAACCCTGTGGAGTTCGCAGC TGAGCCTGCGGCTACCCCATCATACCCACCATACTAA
Protein sequence (LotjaGi5g1v0300200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNFSLMSLAILALTFSLAVQGTLGGIECENLSEETCSFAVSSGGKRCVLEKRVKRTGEEAYTCRTSEIEADKLKDHIE TEQCVKACGLDRKSLGISSDSLLESRFTHQLCSPQCYQSCPNVVDLYFNLAAGEGVFLPMLCEAEGGNARRGMAELKSSG IVAPGPVHFVQFLATPPEPFNPVEFAAEPAATPSYPPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 1 | 194 | 194 | 7.1E-115 | ||
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 194 | 194 | 7.1E-115 | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 198 | 172 | - | – | |
| Pfam | 28 | 171 | 144 | 2.1E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0300200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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