Transcript — View — Lotus Base

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LotjaGi6g1v0251600.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0251600
Transcript ID	LotjaGi6g1v0251600.1
Lotus japonicus genome version	Gifu v1.2
Description	senescence-associated family protein (DUF581); TAIR: AT5G49120.1 DUF581 family protein, putative (DUF581); Swiss-Prot: sp\|Q8LGS1\|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr\|I3STR5\|I3STR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0251600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:56366351..56367942) extracted from Lotus japonicus Gifu genome v1.2.

CAACCATTGAAAAGATTAGGAGATGGTTACACTCAGCTAAAACGATGCTACCAATACCAAACACACATTAACACAAGCAG ACAAAAACCTGCATAAAAGGAAAAAAATTGTACCTCAAAAGAAAATGAAAGGGAAACTACAAAAACCTATACGTGGCAAT TTGATAGCAAAAGCAGTCAAATTGCTGATCGTTCTTTGTTACTGCTCCTTTATAGCTGTAGGGGGACCCACCACCCTCAA CCCTCACCTTTCTTCTCTTCATTTCATTTCCCTTCTCTAGTAAGTAATTTTGGTCTTCAAATTTTCTTTCCATCTTCCTT TTCTCTCTTCTTCTAGCTATAGCTACTTATTATTATGTGATTTCATCACAGCACTTTCCATTCACCACCATAGAAACCAA AGAGAAGGCCAAAAAAATATAAAAAAATGAAGTGACATAGAGAGTTTGATTTTTTTTTTTTGAAATATGATGGTGGGTCT GAGTGTGGTGTTGGAAGCACAGAAGGGTGGTGGTGTTAGCAAGGAGACACCCCAAGTGATTAACAAAACCATGATGCTAA GCAGCAGCAGCAGCATCAACAAACACTCTTCTTCTTCTTTTTCTTCTTCTTCTATGTCCTGGAATTCCCAGCACTCAGCT TTTCAAGAACCAGCTTTTCTAGAGCTCTGTTTTCTCTGCAGGAAGAGGCTGATGCAAGGGAAAGACATTTACATGTACAA GTGAGTCATTGAAACTTCAAACCCGGATCTTATTTTGGTCTATTACACTTTTTATATGGCATGCCTCTTGTTTCTTCTTC TGGGTATGTCAAAACGCAAGATCTTTATGCATGGTGTTTGAGCTCTGTTCTGTTTGATGTTTTTCTTTGTGCTCTGTTTT TTCTTTTGTAATTTTTTGGTTTCTTTTTTGAAACATGAACATTTGAAGAGGGGACAGAGCTTTCTGTAGCGAGGAGTGCA GGTGCAAGCAGATTTTCATGGATGAGGAAGAGACTGTTCAGACAGAAAACTGCTCCATGGCTGCAATGAGACCCACATCC TCTGCCTCCTCCTCTGTTTCTTCTTCTTCTTCAACTCCTCATCGTAAGAAAGGATCAAGAAACAGAAGGGGTGGTTTTGC TTACTGATGAGGAGAGGAAGGAAGCTACTAAGCTTAGAGTAGAGAAGAGAGAAAATACAAAAATGGGGGGTCTTTGTTTT TTTGGAAGCAATATTCCAGTTTTACCCATGCTTTATGTTGTAATAAGTAATAACCTCCTAGTGTTTTGTCCTTTTGCTTC CTAGTATGAAGCCAAAATGTCCTCTCAACTTTTAGTTTTATGTCATGGGGCTCCATTCTCCAACCTGTTGGCTATAAACC TGTTAGTTCTGGTGCATTGCATTTAAGTGCTTTTCATTATTGCCCAGAAACTAGAGACATTTCATAATATATGATGTGTT TTTAGATTTATGATGGTTGAACTTTACTTCTTCAATTCATGTTGTGAGTGTTAAAATCTTACTTTCTCCTTTGTGGGTTG AGAATTGAGATGTATGTTTTATAATCAAGCACAAACATGTGTTGATAAAAGAATTTGAATTCTATGCTGTTA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0251600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGTGGGTCTGAGTGTGGTGTTGGAAGCACAGAAGGGTGGTGGTGTTAGCAAGGAGACACCCCAAGTGATTAACAA AACCATGATGCTAAGCAGCAGCAGCAGCATCAACAAACACTCTTCTTCTTCTTTTTCTTCTTCTTCTATGTCCTGGAATT CCCAGCACTCAGCTTTTCAAGAACCAGCTTTTCTAGAGCTCTGTTTTCTCTGCAGGAAGAGGCTGATGCAAGGGAAAGAC ATTTACATGTACAAAGGGGACAGAGCTTTCTGTAGCGAGGAGTGCAGGTGCAAGCAGATTTTCATGGATGAGGAAGAGAC TGTTCAGACAGAAAACTGCTCCATGGCTGCAATGAGACCCACATCCTCTGCCTCCTCCTCTGTTTCTTCTTCTTCTTCAA CTCCTCATCGTAAGAAAGGATCAAGAAACAGAAGGGGTGGTTTTGCTTACTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0251600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMVGLSVVLEAQKGGGVSKETPQVINKTMMLSSSSSINKHSSSSFSSSSMSWNSQHSAFQEPAFLELCFLCRKRLMQGKD IYMYKGDRAFCSEECRCKQIFMDEEETVQTENCSMAAMRPTSSASSSVSSSSSTPHRKKGSRNRRGGFAY

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33059:SF84 View details on PTHR33059:SF84 Search for proteins/transripts with this domain View external data on PTHR33059:SF84	2	145	144	7.6E-49	–
PANTHER	PTHR33059 View details on PTHR33059 Search for proteins/transripts with this domain View external data on PTHR33059	2	145	144	7.6E-49	–
Pfam	PF04570 View details on PF04570 Search for proteins/transripts with this domain View external data on PF04570	55	105	51	2.1E-23	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51795 View details on PS51795 Search for proteins/transripts with this domain View external data on PS51795	63	107	45	24.093	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	119	150	32	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	119	136	18	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0251600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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