Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

  • Lotus japonicus Gifu v1.2 assembly

    Version 1.2 of the Lotus japonicus Gifu genome.

    • MD5 hash: ec94ee57478d395b9dc37bbabaa96767
    • Filename: Lotusjaponicus_Gifu_v1.2_genome.fa.gz
    • Size: 156.31M
    • lotus japonicus
    • genome
    115 downloads
  • Lotus japonicus Gifu v1.2 CDS

    Coding sequences predicted from v1.2 of the Lotus japonicus Gifu genome assembly

    • MD5 hash: d83e1b76005bf4db0bd548fdbc4ccbb9
    • Filename: Lotusjaponicus_Gifu_v1.2_cds.fa.gz
    • Size: 12.25M
    • lotus japonicus
    • genome
    • gifu
    75 downloads
  • Lotus japonicus Gifu v1.2 Proteins

    Predicted proteins based on v1.2 of the Lotus japonicus Gifu genome assembly

    • MD5 hash: 81ac5678e2a7ce46f01b242fcf1d1a85
    • Filename: Lotusjaponicus_Gifu_v1.2_proteins.fa.gz
    • Size: 7.59M
    • lotus japonicus
    • protein
    62 downloads
  • Lotus japonicus Gifu v1.2 assembly gene annotations

    Gene annotation of Lotus japonicus Gifu v1.2, written in gff3 format.

    • MD5 hash: 40c53437ba4e91b86caf045944bbdf42
    • Filename: Lotusjaponicus_Gifu_v1.2_predictedGenes.gff3.gz
    • Size: 10.86M
    • annotation
    • genome
    • lotus japonicus
    56 downloads
  • Lotus japonicus Gifu v1.2 gene ontology (GO) annotation file

    Gene annotation file with domain predictions performed using InterProScan

    • MD5 hash: 1f734344c29f6b568d704373f90d8c3d
    • Filename: Lotusjaponicus_Gifu_v1.2_geneOntology.gaf.gz
    • Size: 1.85M
    • lotus japonicus
    • genome
    • transcriptome
    39 downloads
  • Lotus japonicus Gifu v1.2 non-coding RNA

    Non-coding RNA of Lotus japonicus Gifu v1.2, written in gff3 format.

    • MD5 hash: 9368476672852cf621670a14c6fc1f6d
    • Filename: Lotusjaponicus_Gifu_v1.2_ncRNA.gff3.gz
    • Size: 43.77K
    • annotation
    • lotus japonicus
    • rna
    28 downloads
  • Lotus japonicus Gifu v1.2 repeats

    Repeats of Lotus japonicus Gifu v1.2, written in gff3 format.

    • MD5 hash: fecc99ad8d0f9137349a4e30b154caa6
    • Filename: Lotusjaponicus_Gifu_v1.2_repeats.gff3.gz
    • Size: 5.90M
    • annotation
    • lotus japonicus
    • repeat
    15 downloads
  • Lotus japonicus MG20 v3.0 Genome

    Lotus japonicus MG20 v3.0 genome assembly

    • MD5 hash: 08bdeb9d026debc04c35672063fd6959
    • Filename: Lotusjaponicus_MG20_v3.0_genome.fa.gz
    • Size: 115.99M
    • lotus japonicus
    • genome
    5,308 downloads
  • Lotus japonicus MG20 v3.0 cDNA (mRNA)

    Complementary DNA (cDNA) predicted based on v3.0 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: 350e40354f6b057d175fe5c8ff7dddae
    • Filename: Lotusjaponicus_MG20_v3.0_cdna.fa.gz
    • Size: 29.68M
    • lotus japonicus
    • transcriptome
    • genome
    890 downloads
  • Lotus japonicus MG20 v3.0 CDS

    Coding sequences predicted from v3.0 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: 731b433d489ebc7039305c67bd2b1d89
    • Filename: Lotusjaponicus_MG20_v3.0_cds.fa.gz
    • Size: 13.37M
    • lotus japonicus
    • genome
    870 downloads
  • Lotus japonicus MG20 v3.0 Proteins

    Predicted proteins based on v3.0 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: e501f31cf850d74cb8c51ba7f684f4bf
    • Filename: Lotusjaponicus_MG20_v3.0_proteins.fa.gz
    • Size: 9.47M
    • lotus japonicus
    • genome
    923 downloads
  • Lotus japonicus MG20 v3.0 assembly gene annotations

    Gene annotation of Lotus japonicus MG20 v3.0, written in gff3 format.

    • MD5 hash: baafdee6708503c328ad9e2382e88259
    • Filename: Lotusjaponicus_MG20_v3.0_annotations.gff3.gz
    • Size: 10.04M
    • annotation
    • genome
    • lotus japonicus
    1,192 downloads
  • Codon usage table for L. japonicus v3.0

    Mun et al. (2016) Sci Rep, 6. doi: 10.1038/srep39447

    • MD5 hash: c204765463f5f5f40f6f30da3639b27b
    • Filename: CodonUsageTable_Ljv3.0.xlsx
    • Size: 44.01K
    • lotus japonicus
    • genome
    1,963 downloads
  • Lotus japonicus MG20 v2.5 Genome

    Lotus japonicus MG20 v2.5 genome assembly

    • MD5 hash: bd2a7f9184837d05c86f910b1c6fc149
    • Filename: Lotusjaponicus_MG20_v2.5_LjSGA_genome.fa.gz
    • Size: 88.09M
    • lotus japonicus
    • genome
    1,898 downloads
  • Lotus japonicus MG20 v2.5 CDS

    Coding sequences predicted from v2.5 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: e5397bbb6b5b590ac31cac0e0594236f
    • Filename: Lotusjaponicus_MG20_v2.5_cds.fa.gz
    • Size: 8.94M
    • genome
    • lotus japonicus
    561 downloads
  • Lotus japonicus MG20 v2.5 Proteins

    Predicted proteins based on v2.5 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: 23d4daeec2441e055a7e7e6b69cd9388
    • Filename: Lotusjaponicus_MG20_v2.5_proteins.fa.gz
    • Size: 5.82M
    • lotus japonicus
    • protein
    633 downloads
  • Lotus japonicus MG20 v3.0 gene ontology (GO) annotation file

    Gene annotation file with domain predictions performed using InterProScan

    • MD5 hash: 7da04254fb8857717d00954966c9ffa3
    • Filename: Lotusjaponicus_MG20_v3.0_geneOntology.gaf.gz
    • Size: 790.07K
    • lotus japonicus
    • genome
    • transcriptome
    456 downloads
  • Lotus japonicus transcript mapping table

    A table containing bi-directional BLASTn hits for the MG20 2.5 to MG20 3.0 genome, as well as the MG20 3.0 to Gifu 1.2 genome.

    • MD5 hash: 10ede41cb6356c5cbb6eed7b912d1c74
    • Filename: Lotusjaponicus_TranscriptMapping.csv.gz
    • Size: 1.39M
    • lotus japonicus
    • transcript
    6 downloads
  • Readme file for FSTpoolit

    Urbański et al. (2012) Plant J, 69(4). doi: 10.1111/j.1365-313X.2011.04827.x

    • MD5 hash: fb20d5116621c5b275cd55836b5bf763
    • Filename: FSTpoolit_README.txt
    • Size: 10.98K
    • FSTpoolit
    • software
    • LORE1
    3,674 downloads
  • FSTpoolit program v0.21

    Urbański et al. (2012) Plant J, 69(4). doi: 10.1111/j.1365-313X.2011.04827.x

    • MD5 hash: 4839565966dd124926407f616ee564f0
    • Filename: FSTpoolit_v0.21.tar.gz
    • Size: 16.82M
    • FSTpoolit
    • software
    • LORE1
    1,377 downloads
  • Shortran v0.43

    Gupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496

    • MD5 hash: 34b1495171f58c48a95a77122e720af3
    • Filename: shortran_0.43.tar.gz
    • Size: 44.58M
    • shortran
    • software
    7,077 downloads
  • Shortran demo output

    Gupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496

    • MD5 hash: 2343ac9f3ec251b7c1f01d6f8c6a169a
    • Filename: shortran_demo-output.tar.gz
    • Size: 102.81M
    • software
    • shortran
    3,256 downloads
  • Shortran user manual

    Gupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496

    • MD5 hash: c7fc0b5e7f3fbe4adec75e1b46ad5c43
    • Filename: shortran_v.0.43_manual.pdf
    • Size: 853.37K
    • shortran
    • software
    6,617 downloads