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  • Lotus japonicus Gifu v1.2 assembly

    Version 1.2 of the Lotus japonicus Gifu genome.

    • MD5 hash: ec94ee57478d395b9dc37bbabaa96767
    • Filename: Lotusjaponicus_Gifu_v1.2_genome.fa.gz
    • Size: 156.31M
    • lotus japonicus
    • genome
    3,306 downloads
  • Lotus japonicus Gifu v1.3 CDS

    Updated coding sequences predicted from v1.2 of the Lotus japonicus Gifu genome assembly. This supersedes the v1.2 CDS file.

    • MD5 hash: 39fd2b5aa169e8eb18d55e4350fbc33c
    • Filename: Lotusjaponicus_Gifu_v1.3_cds.fa.gz
    • Size: 12.28M
    • lotus japonicus
    • genome
    • gifu
    194 downloads
  • Lotus japonicus Gifu v1.3 Proteins

    Updated predicted proteins based on v1.2 of the Lotus japonicus Gifu genome assembly. This supersedes the v1.2 proteins file.

    • MD5 hash: a297c83c5e213c1ca5a287316caccb36
    • Filename: Lotusjaponicus_Gifu_v1.3_proteins.fa.gz
    • Size: 7.62M
    • lotus japonicus
    • protein
    179 downloads
  • Lotus japonicus Gifu v1.2 assembly gene annotations (updated as v1.3)

    Gene annotation of Lotus japonicus Gifu v1.2, written in gff3 format. This supersedes the v1.2 gff3 file.

    • MD5 hash: 444d7a31a4d70b0136974a1fa3aa3204
    • Filename: Lotusjaponicus_Gifu_v1.3_predictedProteins.gff3.gz
    • Size: 7.04M
    • annotation
    • genome
    • lotus japonicus
    252 downloads
  • Lotus japonicus Gifu v1.2 CDS

    Coding sequences predicted from v1.2 of the Lotus japonicus Gifu genome assembly

    • MD5 hash: d83e1b76005bf4db0bd548fdbc4ccbb9
    • Filename: Lotusjaponicus_Gifu_v1.2_cds.fa.gz
    • Size: 12.25M
    • lotus japonicus
    • genome
    • gifu
    383 downloads
  • Lotus japonicus Gifu v1.2 Proteins

    Predicted proteins based on v1.2 of the Lotus japonicus Gifu genome assembly

    • MD5 hash: 81ac5678e2a7ce46f01b242fcf1d1a85
    • Filename: Lotusjaponicus_Gifu_v1.2_proteins.fa.gz
    • Size: 7.59M
    • lotus japonicus
    • protein
    445 downloads
  • Lotus japonicus Gifu v1.2 assembly gene annotations

    Gene annotation of Lotus japonicus Gifu v1.2, written in gff3 format.

    • MD5 hash: 40c53437ba4e91b86caf045944bbdf42
    • Filename: Lotusjaponicus_Gifu_v1.2_predictedGenes.gff3.gz
    • Size: 10.86M
    • annotation
    • genome
    • lotus japonicus
    593 downloads
  • Lotus japonicus Gifu v1.2 gene ontology (GO) annotation file

    Gene annotation file with domain predictions performed using InterProScan

    • MD5 hash: 1f734344c29f6b568d704373f90d8c3d
    • Filename: Lotusjaponicus_Gifu_v1.2_geneOntology.gaf.gz
    • Size: 1.85M
    • lotus japonicus
    • genome
    • transcriptome
    401 downloads
  • Lotus japonicus Gifu v1.2 non-coding RNA

    Non-coding RNA of Lotus japonicus Gifu v1.2, written in gff3 format.

    • MD5 hash: 9368476672852cf621670a14c6fc1f6d
    • Filename: Lotusjaponicus_Gifu_v1.2_ncRNA.gff3.gz
    • Size: 43.77K
    • annotation
    • lotus japonicus
    • rna
    105 downloads
  • Lotus japonicus Gifu v1.2 repeats

    Repeats of Lotus japonicus Gifu v1.2, written in gff3 format.

    • MD5 hash: fecc99ad8d0f9137349a4e30b154caa6
    • Filename: Lotusjaponicus_Gifu_v1.2_repeats.gff3.gz
    • Size: 5.90M
    • annotation
    • lotus japonicus
    • repeat
    91 downloads
  • Lotus japonicus MG20 v3.0 Genome

    Lotus japonicus MG20 v3.0 genome assembly

    • MD5 hash: 08bdeb9d026debc04c35672063fd6959
    • Filename: Lotusjaponicus_MG20_v3.0_genome.fa.gz
    • Size: 115.99M
    • lotus japonicus
    • genome
    7,052 downloads
  • Lotus japonicus MG20 v3.0 cDNA (mRNA)

    Complementary DNA (cDNA) predicted based on v3.0 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: 350e40354f6b057d175fe5c8ff7dddae
    • Filename: Lotusjaponicus_MG20_v3.0_cdna.fa.gz
    • Size: 29.68M
    • lotus japonicus
    • transcriptome
    • genome
    1,092 downloads
  • Lotus japonicus MG20 v3.0 CDS

    Coding sequences predicted from v3.0 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: 731b433d489ebc7039305c67bd2b1d89
    • Filename: Lotusjaponicus_MG20_v3.0_cds.fa.gz
    • Size: 13.37M
    • lotus japonicus
    • genome
    1,351 downloads
  • Lotus japonicus MG20 v3.0 Proteins

    Predicted proteins based on v3.0 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: e501f31cf850d74cb8c51ba7f684f4bf
    • Filename: Lotusjaponicus_MG20_v3.0_proteins.fa.gz
    • Size: 9.47M
    • lotus japonicus
    • genome
    1,392 downloads
  • Lotus japonicus MG20 v3.0 assembly gene annotations

    Gene annotation of Lotus japonicus MG20 v3.0, written in gff3 format.

    • MD5 hash: baafdee6708503c328ad9e2382e88259
    • Filename: Lotusjaponicus_MG20_v3.0_annotations.gff3.gz
    • Size: 10.04M
    • annotation
    • genome
    • lotus japonicus
    2,122 downloads
  • Codon usage table for L. japonicus v3.0

    Mun et al. (2016) Sci Rep, 6. doi: 10.1038/srep39447

    • MD5 hash: c204765463f5f5f40f6f30da3639b27b
    • Filename: CodonUsageTable_Ljv3.0.xlsx
    • Size: 44.01K
    • lotus japonicus
    • genome
    2,806 downloads
  • Lotus japonicus MG20 v2.5 Genome

    Lotus japonicus MG20 v2.5 genome assembly

    • MD5 hash: bd2a7f9184837d05c86f910b1c6fc149
    • Filename: Lotusjaponicus_MG20_v2.5_LjSGA_genome.fa.gz
    • Size: 88.09M
    • lotus japonicus
    • genome
    1,953 downloads
  • Lotus japonicus MG20 v2.5 CDS

    Coding sequences predicted from v2.5 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: e5397bbb6b5b590ac31cac0e0594236f
    • Filename: Lotusjaponicus_MG20_v2.5_cds.fa.gz
    • Size: 8.94M
    • genome
    • lotus japonicus
    600 downloads
  • Lotus japonicus MG20 v2.5 Proteins

    Predicted proteins based on v2.5 of the Lotus japonicus MG20 genome assembly

    • MD5 hash: 23d4daeec2441e055a7e7e6b69cd9388
    • Filename: Lotusjaponicus_MG20_v2.5_proteins.fa.gz
    • Size: 5.82M
    • lotus japonicus
    • protein
    723 downloads
  • LORE1 insertions (MG20 v3.0)

    LORE1 insertions mapped against the Lotus japonicus MG20 v3.0 genome. File is in GFF3 format.

    • MD5 hash: 35440b6e3c5c55c9d9d5945c3923fdb1
    • Filename: LORE1ins_MG20_3.0.gff3.gz
    • Size: 12.53M
    • lore1
    15 downloads
  • Raw data of LORE1 insertions (MG20 v3.0)

    LORE1 insertions mapped against the Raw data of Lotus japonicus MG20 v3.0 genome. File is in tab-separated format.

    • MD5 hash: 6cd5a37b4d282fc13f97119102e87de5
    • Filename: LORE1ins_MG20_3.0.txt.gz
    • Size: 28.98M
    • lore1
    17 downloads
  • Lotus japonicus MG20 v3.0 gene ontology (GO) annotation file

    Gene annotation file with domain predictions performed using InterProScan

    • MD5 hash: 7da04254fb8857717d00954966c9ffa3
    • Filename: Lotusjaponicus_MG20_v3.0_geneOntology.gaf.gz
    • Size: 790.07K
    • lotus japonicus
    • genome
    • transcriptome
    611 downloads
  • Lotus japonicus transcript mapping table

    A table containing bi-directional BLASTn hits for the MG20 2.5 to MG20 3.0 genome, as well as the MG20 3.0 to Gifu 1.2 genome.

    • MD5 hash: 10ede41cb6356c5cbb6eed7b912d1c74
    • Filename: Lotusjaponicus_TranscriptMapping.csv.gz
    • Size: 1.39M
    • lotus japonicus
    • transcript
    104 downloads
  • Readme file for FSTpoolit

    Urbański et al. (2012) Plant J, 69(4). doi: 10.1111/j.1365-313X.2011.04827.x

    • MD5 hash: fb20d5116621c5b275cd55836b5bf763
    • Filename: FSTpoolit_README.txt
    • Size: 10.98K
    • FSTpoolit
    • software
    • LORE1
    5,522 downloads
  • FSTpoolit program v0.21

    Urbański et al. (2012) Plant J, 69(4). doi: 10.1111/j.1365-313X.2011.04827.x

    • MD5 hash: 4839565966dd124926407f616ee564f0
    • Filename: FSTpoolit_v0.21.tar.gz
    • Size: 16.82M
    • FSTpoolit
    • software
    • LORE1
    1,397 downloads
  • Shortran v0.43

    Gupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496

    • MD5 hash: 34b1495171f58c48a95a77122e720af3
    • Filename: shortran_0.43.tar.gz
    • Size: 44.58M
    • shortran
    • software
    7,125 downloads
  • Shortran demo output

    Gupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496

    • MD5 hash: 2343ac9f3ec251b7c1f01d6f8c6a169a
    • Filename: shortran_demo-output.tar.gz
    • Size: 102.81M
    • software
    • shortran
    8,309 downloads
  • Shortran user manual

    Gupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496

    • MD5 hash: c7fc0b5e7f3fbe4adec75e1b46ad5c43
    • Filename: shortran_v.0.43_manual.pdf
    • Size: 853.37K
    • shortran
    • software
    7,683 downloads