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Version 1.2 of the Lotus japonicus Gifu genome.
ec94ee57478d395b9dc37bbabaa96767Lotusjaponicus_Gifu_v1.2_genome.fa.gz156.31MUpdated coding sequences predicted from v1.2 of the Lotus japonicus Gifu genome assembly. This supersedes the v1.2 CDS file.
39fd2b5aa169e8eb18d55e4350fbc33cLotusjaponicus_Gifu_v1.3_cds.fa.gz12.28MUpdated predicted proteins based on v1.2 of the Lotus japonicus Gifu genome assembly. This supersedes the v1.2 proteins file.
a297c83c5e213c1ca5a287316caccb36Lotusjaponicus_Gifu_v1.3_proteins.fa.gz7.62MGene annotation of Lotus japonicus Gifu v1.2, written in gff3 format. This supersedes the v1.2 gff3 file.
444d7a31a4d70b0136974a1fa3aa3204Lotusjaponicus_Gifu_v1.3_predictedProteins.gff3.gz7.04MCoding sequences predicted from v1.2 of the Lotus japonicus Gifu genome assembly
d83e1b76005bf4db0bd548fdbc4ccbb9Lotusjaponicus_Gifu_v1.2_cds.fa.gz12.25MPredicted proteins based on v1.2 of the Lotus japonicus Gifu genome assembly
81ac5678e2a7ce46f01b242fcf1d1a85Lotusjaponicus_Gifu_v1.2_proteins.fa.gz7.59MGene annotation of Lotus japonicus Gifu v1.2, written in gff3 format.
40c53437ba4e91b86caf045944bbdf42Lotusjaponicus_Gifu_v1.2_predictedGenes.gff3.gz10.86MGene annotation file with domain predictions performed using InterProScan
1f734344c29f6b568d704373f90d8c3dLotusjaponicus_Gifu_v1.2_geneOntology.gaf.gz1.85MNon-coding RNA of Lotus japonicus Gifu v1.2, written in gff3 format.
9368476672852cf621670a14c6fc1f6dLotusjaponicus_Gifu_v1.2_ncRNA.gff3.gz43.77KRepeats of Lotus japonicus Gifu v1.2, written in gff3 format.
fecc99ad8d0f9137349a4e30b154caa6Lotusjaponicus_Gifu_v1.2_repeats.gff3.gz5.90MLotus japonicus MG20 v3.0 genome assembly
08bdeb9d026debc04c35672063fd6959Lotusjaponicus_MG20_v3.0_genome.fa.gz115.99MComplementary DNA (cDNA) predicted based on v3.0 of the Lotus japonicus MG20 genome assembly
350e40354f6b057d175fe5c8ff7dddaeLotusjaponicus_MG20_v3.0_cdna.fa.gz29.68MCoding sequences predicted from v3.0 of the Lotus japonicus MG20 genome assembly
731b433d489ebc7039305c67bd2b1d89Lotusjaponicus_MG20_v3.0_cds.fa.gz13.37MPredicted proteins based on v3.0 of the Lotus japonicus MG20 genome assembly
e501f31cf850d74cb8c51ba7f684f4bfLotusjaponicus_MG20_v3.0_proteins.fa.gz9.47MGene annotation of Lotus japonicus MG20 v3.0, written in gff3 format.
baafdee6708503c328ad9e2382e88259Lotusjaponicus_MG20_v3.0_annotations.gff3.gz10.04MMun et al. (2016) Sci Rep, 6. doi: 10.1038/srep39447
c204765463f5f5f40f6f30da3639b27bCodonUsageTable_Ljv3.0.xlsx44.01KLotus japonicus MG20 v2.5 genome assembly
bd2a7f9184837d05c86f910b1c6fc149Lotusjaponicus_MG20_v2.5_LjSGA_genome.fa.gz88.09MCoding sequences predicted from v2.5 of the Lotus japonicus MG20 genome assembly
e5397bbb6b5b590ac31cac0e0594236fLotusjaponicus_MG20_v2.5_cds.fa.gz8.94MPredicted proteins based on v2.5 of the Lotus japonicus MG20 genome assembly
23d4daeec2441e055a7e7e6b69cd9388Lotusjaponicus_MG20_v2.5_proteins.fa.gz5.82MLORE1 insertions mapped against the Lotus japonicus MG20 v3.0 genome. File is in GFF3 format.
35440b6e3c5c55c9d9d5945c3923fdb1LORE1ins_MG20_3.0.gff3.gz12.53MLORE1 insertions mapped against the Raw data of Lotus japonicus MG20 v3.0 genome. File is in tab-separated format.
6cd5a37b4d282fc13f97119102e87de5LORE1ins_MG20_3.0.txt.gz28.98MGene annotation file with domain predictions performed using InterProScan
7da04254fb8857717d00954966c9ffa3Lotusjaponicus_MG20_v3.0_geneOntology.gaf.gz790.07KA table containing bi-directional BLASTn hits for the MG20 2.5 to MG20 3.0 genome, as well as the MG20 3.0 to Gifu 1.2 genome.
10ede41cb6356c5cbb6eed7b912d1c74Lotusjaponicus_TranscriptMapping.csv.gz1.39MUrbański et al. (2012) Plant J, 69(4). doi: 10.1111/j.1365-313X.2011.04827.x
fb20d5116621c5b275cd55836b5bf763FSTpoolit_README.txt10.98KUrbański et al. (2012) Plant J, 69(4). doi: 10.1111/j.1365-313X.2011.04827.x
4839565966dd124926407f616ee564f0FSTpoolit_v0.21.tar.gz16.82MGupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496
34b1495171f58c48a95a77122e720af3shortran_0.43.tar.gz44.58MGupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496
2343ac9f3ec251b7c1f01d6f8c6a169ashortran_demo-output.tar.gz102.81MGupta et al. (2012) Bioinformatics, 28(20). doi: 10.1093/bioinformatics/bts496
c7fc0b5e7f3fbe4adec75e1b46ad5c43shortran_v.0.43_manual.pdf853.37K