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Lj2g3v1024290.1

Overview

Field	Value
Gene ID	Lj2g3v1024290
Transcript ID	Lj2g3v1024290.1
Related isoforms 3	Lj2g3v1024290.2 Lj2g3v1024290.3 Lj2g3v1024290.4
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase-like [Glycine max] gi\|356568616\|ref\|XP_003552506.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12750:SF12 View details on PTHR12750:SF12 Search for proteins/transripts with this domain View external data on PTHR12750:SF12	13	389	377	0	–
PANTHER	PTHR12750 View details on PTHR12750 Search for proteins/transripts with this domain View external data on PTHR12750	13	389	377	0	–
Pfam	PF00328 View details on PF00328 Search for proteins/transripts with this domain View external data on PF00328	22	535	514	6.40E-118	IPR000560 Show description in modal box View details on IPR000560 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53254 View details on SSF53254 Search for proteins/transripts with this domain View external data on SSF53254	70	153	84	8.90E-37	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1240 View details on G3DSA:3.40.50.1240 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1240	78	193	116	2.00E-09	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd07061 View details on cd07061 Search for proteins/transripts with this domain View external data on cd07061	79	165	87	1.37E-18	IPR000560 Show description in modal box View details on IPR000560 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	162	185	24	–	–
Gene3D	G3DSA:3.40.50.1240 View details on G3DSA:3.40.50.1240 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1240	231	232	2	2.00E-09	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53254 View details on SSF53254 Search for proteins/transripts with this domain View external data on SSF53254	236	382	147	8.90E-37	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1240 View details on G3DSA:3.40.50.1240 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1240	301	378	78	2.00E-09	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	410	438	29	–	–
PANTHER	PTHR12750:SF12 View details on PTHR12750:SF12 Search for proteins/transripts with this domain View external data on PTHR12750:SF12	438	562	125	0	–
PANTHER	PTHR12750 View details on PTHR12750 Search for proteins/transripts with this domain View external data on PTHR12750	438	562	125	0	–
SUPERFAMILY	SSF53254 View details on SSF53254 Search for proteins/transripts with this domain View external data on SSF53254	446	536	91	8.90E-37	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1240 View details on G3DSA:3.40.50.1240 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1240	451	519	69	2.00E-09	IPR029033 Show description in modal box View details on IPR029033 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	541	562	22	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 114

Expression data

Expression pattern

Expression pattern of Lj2g3v1024290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1024290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.