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Lj4g3v0620300.1

Overview

Field Value
Gene ID Lj4g3v0620300
Transcript ID Lj4g3v0620300.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356499763|ref|XP_003518706.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012:SF366
1 199 199 2.40E-95 –
SUPERFAMILY
SSF54928
1 62 62 5.43E-13
IPR012677
Gene3D
G3DSA:3.30.70.330
1 52 52 2.40E-13
IPR012677
ProSiteProfiles
PS50102
1 46 46 10.804
IPR000504
Pfam
PF00076
1 39 39 1.10E-05
IPR000504
PANTHER
PTHR24012
1 199 199 2.40E-95 –
MobiDBLite
mobidb-lite
130 149 20 – –
SUPERFAMILY
SSF63570
148 297 150 4.19E-42
IPR002004
ProSiteProfiles
PS51309
207 284 78 21.799
IPR002004
Gene3D
G3DSA:1.10.1900.10
208 288 81 1.00E-32
IPR002004
Pfam
PF00658
213 279 67 1.00E-27
IPR002004
SMART
SM00517
219 282 64 1.20E-39
IPR002004

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v0620300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0620300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.