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Lj4g3v1880440.3

Overview

Field Value
Gene ID Lj4g3v1880440
Transcript ID Lj4g3v1880440.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TBC1 domain family member 13-like isoform X2 [Cicer arietinum] gi|502151551|ref|XP_004508496.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22957:SF288
8 182 175 3.60E-144 –
PANTHER
PTHR22957
8 182 175 3.60E-144 –
MobiDBLite
mobidb-lite
40 89 50 – –
SUPERFAMILY
SSF47923
114 173 60 2.17E-44
IPR000195
Gene3D
G3DSA:1.10.8.270
123 155 33 8.50E-25 –
SMART
SM00164
129 369 241 6.00E-06
IPR000195
ProSiteProfiles
PS50086
134 374 241 22.552
IPR000195
Pfam
PF00566
139 363 225 2.80E-21
IPR000195
Coils
Coil
155 175 21 – –
SUPERFAMILY
SSF47923
222 361 140 2.17E-44
IPR000195
Gene3D
G3DSA:1.10.8.270
223 322 100 8.50E-25 –
PANTHER
PTHR22957
237 370 134 3.60E-144 –
PANTHER
PTHR22957:SF288
237 370 134 3.60E-144 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v1880440.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1880440.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.