Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0023800 |
| Transcript ID | LotjaGi1g1v0023800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Microtubule associated protein 65; TAIR: AT5G55230.1 microtubule-associated proteins 65-1; Swiss-Prot: sp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 1; TrEMBL-Plants: tr|A0A0B2QV10|A0A0B2QV10_GLYSO 65-kDa microtubule-associated protein 1; Found in the gene: LotjaGi1g1v0023800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2862192..2865261) extracted from Lotus japonicus Gifu genome v1.2.
AGGCTTGGTTGCTGTGGAAGTTCAATGGCACTCACTGAAGCTCAAAACCCTCTTATTGTGGAAAACACTTGCGGTTCATT GTTGAAGAAGCTGCAGGTAACTAACTTAACTTCATTCACCTGTTGATCCAACGTTACTGGTTATGTACATTGTCTGCAGG ATAGTGAGATTAGTTGATTTCGTTTTATTCGTTGTAGCAAATATGGGATGAGGTAGGCGAGAGCGACGAGGAACGGGACA AGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGTAAAATCTAGGGCACAG CTGCTTCAAGCTTTATCTGATGCTAAGCTTGAGCTTTCGACACTTCTATCAGCTCTTGGAGAAAAGAGCTTCGCCGGAAT TGTTAGTAACTTTGTATTGCCAATCATAGTAGCTTTGTGGTGTATTTAAACTGTTTTGCTATGCATTTTAACCCCTTTCT TTCACAGCCTGAGGACACTTCTGGAACTATCAAGGAGCAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGGCAAC AAAAGGAAGAAAGAATCAAAGAGTTTTCTGATGTGCAGTCACAGATTGAAAAAATATGTGGAGAGATAGCTGGGAGCTTG AACCTTAATGATGTTTCACCCGCGGTTGACGAGTCCGACCTGTCGCTGAAGAAGTTCAATGAGTATCAATCTGAGCTCCA AGATCTTCAAAAAGAAAAAGTAAATTCTGTTATATTATACTCTCCAATAATGTATCAGTTGGTCCCAAATTTGAAATGTT CATTTGATTTCATTCGCTAAACAGCACATTGAGGGTTTTATTGCATTGCTTTGTGTGGCAGACTGAGAGGTTGCACAAGG TTCTTGAATTTGTGAGTACTGTACATGATTTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGTAACAGAGGTTCAT CCAAGCCTTAATGATACGAATGTTGTTCAATCCAAAAGCATAAGCAACGACACTCTAGCTAGGCTTGCTAAGACTGTCTT AACGCTGAAAGAAGATAAAAAGCAGAGGCTCCACAAGGTAATGCATTTAGAACTCTGTTTTATATCATAAAATATGGAAT GACTGTTTAGCTGTATATGCTTTCTACTGTTAGTATCTTTTGCATCCTATGATTTTTCTCTTGCAAAATATTCCATGTAT CTTTTTAAGAAATCCCTATGAATTATGACTGTGGCATGGGGATATTCATTTTTGCTTGACCTTTAATCTATGGTTTAATT TGACCTGTATAACCCTTGCAGCTACAAGAATTAGCTTCTCAATTAATTGACCTGTGGAATCTAATGGATACCCCTCCAGA GGAAAGGAGTCTATTTGACCATGTTACCTGTAATATCTCAGCTTCAGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTC TGGATCTGGTCGAGCAGGTACTTACTATCTTCTGAAGTTTATAGTTTTGAGCTCCTTAAATGATGCTAACTAATGATTTT GTTCTTTTTGTAAAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCTAGCAGGATGAAGGAAATTGCTTTGAA GAAGCAAGGAGAACTCGAAGAGATATTTGCCCGTGCTCATGTAGAAATAGATCCAGAAGCTGCCCGAGAGAGGATTATGG CATTGATTGATTCAGGAGACATTGAACCAACTGAGTTACTGGCTGACATGGACAGTCAGATAGCGAAAGCGAAAGAAGAA GCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTA TAATCGGGTACTTATAGCCTCCCTTCTACATATTTTTTCTCTGTCTATGTGTCTGTGTGCCATGTGGTTGGGGAATGGGG ATAGAAAGCTTTGGTGATAGAGGTGAAGTAGTAATATTCTGATCCGGGCACTTGCTATCTTGTTAATAAAATTTAAAATC CTTTAACCTGATGCAATTGGCATTTGGCTTTATTCTATAGCCTACAAGTTTTAAGTTTAAAATAAAATTTAGATTTGCCA CTTGATAAGAAAATTGAAAGTGGCTTGCCCTTTTTCCTAAAGTTTATAAGTTAGCTTTGGCTTTGACGCAAGTTATGATC ATCCCATAAAACTGTTACATAATCCTTGTTGTTTGGATTATAATTTTACCCTGACAACCTCTGTGAAACAGGATGAAAAC AGGTATAATGCGAGTAGAGGCGCACATTTAAACCTCAAACGTGCAGAGAAAGCTCGGATACTGGTCAACAAAATCCCAGG TATCTATAGAATGAGAATACAACCACCACATAATACTATCAATATTAATTCAATATGCTGTCAGTGTAACAAAATGATGC CACATTATTGGGATGGTTAACTTTGTTTCATCTGGTGAAATGCAGCTTTGGTTGATACATTGGTTGCTAAAACCCGTGCA TGGGAAGAAGAACATGACATGTCATTCTCATATGATGGTGTTCCTCTTCTCGCCATGCTGGATGAATATGCCATGCTCAG GCATGAACGGGAAGAGGAAAAACGAAGGATGAGAGTAAGTTTCTTTGATGATATGATTAAGACATGAATTTTCAGATTAA TTTTAGCATTTGCGAATAATAAACCACGAGCAATAATAAAACTGCCCACCTTGGCCTTTCTGCTCACTATTTTATTTGTA ACATAGAATTCTATTGAAAAATCTTAACCGGTGGACTCTGCACTCTGTAGGACCAGAAGAAGTATCATGAGCTGCAAAAC ACAGAACAGGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTCAGTGCCAAGAAGGGAGCTGGTCCTCGTGT CAATGGAGGAGCCAATGGTACTCCTAACCGGCGGCTATCGCTTAATGCTCATCAAAATGGAAGCAGGTCCATATCGAAAG ACGGTAAAAGGGATAATACTAGACCAGTTGCTCCCGTGAATTATGTGGCCATATCAAACGATGCTGCTTCCCAAGTTTCT GGTACTGAACCCATCCCAGCATCACCCTAA
CDS sequence (LotjaGi1g1v0023800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTCACTGAAGCTCAAAACCCTCTTATTGTGGAAAACACTTGCGGTTCATTGTTGAAGAAGCTGCAGCAAATATG GGATGAGGTAGGCGAGAGCGACGAGGAACGGGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGA GAAAGGTTGAGCAGGCTGTAAAATCTAGGGCACAGCTGCTTCAAGCTTTATCTGATGCTAAGCTTGAGCTTTCGACACTT CTATCAGCTCTTGGAGAAAAGAGCTTCGCCGGAATTCCTGAGGACACTTCTGGAACTATCAAGGAGCAGCTTGCAGCTAT AGCACCAGTACTTGAACAGTTATGGCAACAAAAGGAAGAAAGAATCAAAGAGTTTTCTGATGTGCAGTCACAGATTGAAA AAATATGTGGAGAGATAGCTGGGAGCTTGAACCTTAATGATGTTTCACCCGCGGTTGACGAGTCCGACCTGTCGCTGAAG AAGTTCAATGAGTATCAATCTGAGCTCCAAGATCTTCAAAAAGAAAAAACTGAGAGGTTGCACAAGGTTCTTGAATTTGT GAGTACTGTACATGATTTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGTAACAGAGGTTCATCCAAGCCTTAATG ATACGAATGTTGTTCAATCCAAAAGCATAAGCAACGACACTCTAGCTAGGCTTGCTAAGACTGTCTTAACGCTGAAAGAA GATAAAAAGCAGAGGCTCCACAAGCTACAAGAATTAGCTTCTCAATTAATTGACCTGTGGAATCTAATGGATACCCCTCC AGAGGAAAGGAGTCTATTTGACCATGTTACCTGTAATATCTCAGCTTCAGTTGATGAAGTCACTGTTCCTGGTGCCCTTG CTCTGGATCTGGTCGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCTAGCAGGATGAAGGAAATTGCT TTGAAGAAGCAAGGAGAACTCGAAGAGATATTTGCCCGTGCTCATGTAGAAATAGATCCAGAAGCTGCCCGAGAGAGGAT TATGGCATTGATTGATTCAGGAGACATTGAACCAACTGAGTTACTGGCTGACATGGACAGTCAGATAGCGAAAGCGAAAG AAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAA GACTATAATCGGGATGAAAACAGGTATAATGCGAGTAGAGGCGCACATTTAAACCTCAAACGTGCAGAGAAAGCTCGGAT ACTGGTCAACAAAATCCCAGCTTTGGTTGATACATTGGTTGCTAAAACCCGTGCATGGGAAGAAGAACATGACATGTCAT TCTCATATGATGGTGTTCCTCTTCTCGCCATGCTGGATGAATATGCCATGCTCAGGCATGAACGGGAAGAGGAAAAACGA AGGATGAGAGACCAGAAGAAGTATCATGAGCTGCAAAACACAGAACAGGAAACCATCTTTGGTTCAAGACCCAGCCCTGC TAGGCCAGTCAGTGCCAAGAAGGGAGCTGGTCCTCGTGTCAATGGAGGAGCCAATGGTACTCCTAACCGGCGGCTATCGC TTAATGCTCATCAAAATGGAAGCAGGTCCATATCGAAAGACGGTAAAAGGGATAATACTAGACCAGTTGCTCCCGTGAAT TATGTGGCCATATCAAACGATGCTGCTTCCCAAGTTTCTGGTACTGAACCCATCCCAGCATCACCCTAA
Protein sequence (LotjaGi1g1v0023800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALTEAQNPLIVENTCGSLLKKLQQIWDEVGESDEERDKMLLQLEQECLDVYKRKVEQAVKSRAQLLQALSDAKLELSTL LSALGEKSFAGIPEDTSGTIKEQLAAIAPVLEQLWQQKEERIKEFSDVQSQIEKICGEIAGSLNLNDVSPAVDESDLSLK KFNEYQSELQDLQKEKTERLHKVLEFVSTVHDLCAVLGMDFFSTVTEVHPSLNDTNVVQSKSISNDTLARLAKTVLTLKE DKKQRLHKLQELASQLIDLWNLMDTPPEERSLFDHVTCNISASVDEVTVPGALALDLVEQAEVEVERLDQLKASRMKEIA LKKQGELEEIFARAHVEIDPEAARERIMALIDSGDIEPTELLADMDSQIAKAKEEALSRKDILDKVEKWMSACEEESWLE DYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEEHDMSFSYDGVPLLAMLDEYAMLRHEREEEKR RMRDQKKYHELQNTEQETIFGSRPSPARPVSAKKGAGPRVNGGANGTPNRRLSLNAHQNGSRSISKDGKRDNTRPVAPVN YVAISNDAASQVSGTEPIPASP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 582 | 582 | 4.7E-298 | ||
| PANTHER | 1 | 582 | 582 | 4.7E-298 | – | |
| Pfam | 52 | 547 | 496 | 1.1E-89 | – | |
| Coils | 155 | 182 | 28 | - | – | |
| Coils | 239 | 259 | 21 | - | – | |
| Coils | 298 | 318 | 21 | - | – | |
| Gene3D | 369 | 502 | 134 | 5.2E-31 | – | |
| Coils | 461 | 481 | 21 | - | – | |
| MobiDBLite | 476 | 493 | 18 | - | – | |
| MobiDBLite | 476 | 582 | 107 | - | – | |
| MobiDBLite | 526 | 542 | 17 | - | – | |
| MobiDBLite | 564 | 582 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. |
Expression pattern of LotjaGi1g1v0023800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…