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LotjaGi1g1v0137400.2

Overview

Field Value
Gene ID LotjaGi1g1v0137400
Transcript ID LotjaGi1g1v0137400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description MADS box transcription factor; TAIR: AT4G24540.1 AGAMOUS-like 24; Swiss-Prot: sp|O82794|AGL24_ARATH MADS-box protein AGL24; TrEMBL-Plants: tr|I3SC87|I3SC87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0137400
Working Lj name n.a.

We have encountered a general error: No InterPro domain data available

Sequence information

Genomic sequence (LjG1.1_chr1:22439413..22439616) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGAGGAAGAAGATAAAGATAAAGAAAATTGACAACATAACGGCAAGGCAAGTGACGTTTTCTAAGAGGAGGCGAGG GATCTTCAAGAAAGCTCAAGAGCTTTCAGTTCTGTGTGATGCTGAGGTTGGTATTATTGTATTCTCAGCCACAGAGAAGC TCTATGAATATGCCAGCTCCAGGTATATATCTTGTTACTGTTAA 

CDS sequence (LotjaGi1g1v0137400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAGGAAGAAGATAAAGATAAAGAAAATTGACAACATAACGGCAAGGCAAGTGACGTTTTCTAAGAGGAGGCGAGG GATCTTCAAGAAAGCTCAAGAGCTTTCAGTTCTGTGTGATGCTGAGGTTGGTATTATTGTATTCTCAGCCACAGAGAAGC TCTATGAATATGCCAGCTCCAGGTATATATCTTGTTACTGTTAA 

Protein sequence (LotjaGi1g1v0137400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARKKIKIKKIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVGIIVFSATEKLYEYASSRYISCYC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Unable to find any records for the transcript with the identifer LotjaGi1g1v0137400.2.

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0137400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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