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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0176800 |
| Transcript ID | LotjaGi1g1v0176800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Raffinose synthase; TAIR: AT5G40390.1 Raffinose synthase family protein; Swiss-Prot: sp|Q8VWN6|RFS_PEA Galactinol--sucrose galactosyltransferase; TrEMBL-Plants: tr|G7J4U7|G7J4U7_MEDTR Galactinol-raffinose galactosyltransferase; Found in the gene: LotjaGi1g1v0176800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:33937492..33939189) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACCGAACCTCCGCGGGGGAGCAAATGCCGTGCCGGCTTATAAAGTTTCAGGAGAATCCCAAGTTCAGGGAGTATGG CGGCGGCGGGAAGGGTTTGGGGGCGTTTGTGAGGGATTTGAAGGAGGAGTTTAGGAGCGTGGAGCAGGTGTATGTTTGGC ACGCACTGTGTGGGTATTGGGGTGGGGTGAGACCTCACGTGGAAGGCATGCCGGAGGCGAAGGTGGTTGCTCCGCGGTTG TCTCCGGGGTTGAAGATGACGATGGAGGATTTGGCGGTGGATAAGATTGTGAGTAGCGGTGTGGGGTTGGTGCCGCCGCA AATGGTCCAGAAATTGTACGATGGGCTCCACTCGCATTTGGAATCGGCGGGAATTGACGGTGTTAAGGTTGATGTCATAC ATGTAAGTCTTCATTATTCTTTCTTCTTCCTCTTCTTCTAATTAAAAGAGCACAACATACCAGCATGGCAGCATATATAA CAATGAATTAAATTCATCTGAAAGAAAACAATTAAACTATTTTCTGAATATTATAGTATTTTATTTTTTATTTCACCAAG TGTTATTATATATTATTAAACTATTAGCTTGTGCGAGTAATGGACGTCAGTCGCATTAGTAAAAAGTGTACGTTTAAACT CGTAAATTGAGAGTTTAATTCAATTCGTCCGCACCCTTAAATAAATCTTTTGACCTTTACCACATGAGATTTAGATTTAT GAGAACAATTTAACATTTACCTTTTGGGCATGGAATCTTGCTGTAAAAATATTAAAAAGAAAGATAATATAGTATGTTTA ATTTTGTAATCAGTTTAACATTAATAGTAGTGCACAAATAATTGATACTAGTTAAGCCCATATACATGGTAATGTTCTTT TTTGAAACATAAAAATAAGAGTTGTACTGAAAAACAAAAATATAAGATCAAAACAGAGACATTATCTTGATAATTCAAGT GTCAAATGTCACTGCCTGATGTTTAGCATTTTTGCAGTTGCTAGAGACGCTATCTGAGGAATACGGTGGCCGAGTCGACC TTGCAAAAGCTTATTACAAAGCACTCACTACTTCAGTGAAGAAGCATTTCAAAGGCAATGGAGTGATTGCCAGCATGGAG CATTGCAATGACTTCTTCCTTCTAGGCACAGAAGCCATAGCCCTTGGCCGCGTAGGTAAGCATTAAATCAAATTAAGCAT TGTAACTTCATTTCATAGATGACATGTTGTAAGTTATATTATAACACAACATGCATGTTTTATATCTGATCCCTTCTTTT TGATCAACAGGTGATGATTTTTGGTGCACTGATCCCTCAGGAGATGTAAACGGAACCTATTGGCTCCAAGGGTGTCACAT GGTGCATTGTGCCTACAACAGCTTGTGGATGGGAAATTTCATTCACCCGGACTGGGACATGTTCCAGTCCACTCACCCTT GCGCCGAGTTCCACGCTGCCTCTAGAGCCATCTCCGGCGGCCCCATTTACGTTTCTGATTGCGTTGGAAAGCACAACTTT AAGCTTCTCAAGACCCTCGCCTTGCCTGATGGCTCGATTTTGCGCTGTCAAGGCTACGCGCTCCCCACCCGAGACTGCTT GTTCCAAAACCCCTTGCATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAAGTAAGTGTGTGTTTGCATTTCT GTTAACATTTAACTAAAC
CDS sequence (LotjaGi1g1v0176800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCGAACCTCCGCGGGGGAGCAAATGCCGTGCCGGCTTATAAAGTTTCAGGAGAATCCCAAGTTCAGGGAGTATGG CGGCGGCGGGAAGGGTTTGGGGGCGTTTGTGAGGGATTTGAAGGAGGAGTTTAGGAGCGTGGAGCAGGTGTATGTTTGGC ACGCACTGTGTGGGTATTGGGGTGGGGTGAGACCTCACGTGGAAGGCATGCCGGAGGCGAAGGTGGTTGCTCCGCGGTTG TCTCCGGGGTTGAAGATGACGATGGAGGATTTGGCGGTGGATAAGATTGTGAGTAGCGGTGTGGGGTTGGTGCCGCCGCA AATGGTCCAGAAATTGTACGATGGGCTCCACTCGCATTTGGAATCGGCGGGAATTGACGGTGTTAAGGTTGATGTCATAC ATTTGCTAGAGACGCTATCTGAGGAATACGGTGGCCGAGTCGACCTTGCAAAAGCTTATTACAAAGCACTCACTACTTCA GTGAAGAAGCATTTCAAAGGCAATGGAGTGATTGCCAGCATGGAGCATTGCAATGACTTCTTCCTTCTAGGCACAGAAGC CATAGCCCTTGGCCGCGTAGGTGATGATTTTTGGTGCACTGATCCCTCAGGAGATGTAAACGGAACCTATTGGCTCCAAG GGTGTCACATGGTGCATTGTGCCTACAACAGCTTGTGGATGGGAAATTTCATTCACCCGGACTGGGACATGTTCCAGTCC ACTCACCCTTGCGCCGAGTTCCACGCTGCCTCTAGAGCCATCTCCGGCGGCCCCATTTACGTTTCTGATTGCGTTGGAAA GCACAACTTTAAGCTTCTCAAGACCCTCGCCTTGCCTGATGGCTCGATTTTGCGCTGTCAAGGCTACGCGCTCCCCACCC GAGACTGCTTGTTCCAAAACCCCTTGCATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAAGTAAGTGTGTGT TTGCATTTCTGTTAA
Protein sequence (LotjaGi1g1v0176800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRTSAGEQMPCRLIKFQENPKFREYGGGGKGLGAFVRDLKEEFRSVEQVYVWHALCGYWGGVRPHVEGMPEAKVVAPRL SPGLKMTMEDLAVDKIVSSGVGLVPPQMVQKLYDGLHSHLESAGIDGVKVDVIHLLETLSEEYGGRVDLAKAYYKALTTS VKKHFKGNGVIASMEHCNDFFLLGTEAIALGRVGDDFWCTDPSGDVNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQS THPCAEFHAASRAISGGPIYVSDCVGKHNFKLLKTLALPDGSILRCQGYALPTRDCLFQNPLHDGKTMLKIWNLNKVSVC LHFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 321 | 321 | 2.6E-198 | – | |
| PANTHER | 1 | 321 | 321 | 2.6E-198 | ||
| Pfam | 2 | 318 | 317 | 3.6E-165 | ||
| SUPERFAMILY | 31 | 276 | 246 | 2.58E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0176800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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