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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0185900 |
| Transcript ID | LotjaGi1g1v0185900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotide 5'-hydroxyl-kinase NOL9; TAIR: AT5G11010.2 Pre-mRNA cleavage complex II protein family; Swiss-Prot: sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9; TrEMBL-Plants: tr|A0A151RWU7|A0A151RWU7_CAJCA Nucleolar protein 9; Found in the gene: LotjaGi1g1v0185900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36396077..36397785) extracted from Lotus japonicus Gifu genome v1.2.
CCCAGGGTGCTTGTTCAGAAGGATGCACGTCTCCTGCGTGATTTACGAATAATGGCATATTTCAGACAGTGCTTTCCCAG TGATTCAGATATTTCTACAATCAAGGAACTTGCACATTCGTTGGCCTCCCACTGTCCTTATGAAGTTCCCATTGCAAGCA TAAAGATTCAACATCTTCATCGTGAGGTTGTTTTAAATTTTGCTTATTATCTTTTCTGAGTCTATAGTGAGCCCTTAGTA TAACTGTAAGTTTGCTGCCTTGTGACCTGATGGCCACAGGTAGTAGTTGCAGAAACTTCCTCTTTACTATGAAGATAAAG TAATGTGCATCTAACCCTTCCTAAGCTCAACAATGGTTGAGTCTGGTGATATAGCTGCCTTTTAAGTTTGGGTTTTGTTG CATTTGATATTCTAAGCCGACTTTGAATTTTAAATCTTTTTAATATAGAGTAATAGAGATAAACATATTATGTTTCCTTG TTAGGAATTTCAACAATACTTCTTACATCTAATTTTTTTCTTTTAAAGGTGAGCTGAACATTCTCTTATGGTTTGTCTGT ATTTTTGTAGGTCCCAAGCTCTGAGATGTTCTACAGTTTGAATGCTAGCATTGTTGGTTTAGCAGTTGATTCTGAAGGAC CTGAAAATTTACCTTGGTGTCTTGGTCTTGGTAGGTAATTTGATTGCCTTTCAAATTCTAAAATATCTCATTATGTCTGG CTGGGAAATAAATGTTAGTTTACTGATATGCTATTGCAAAGTTGAAATTTTAGATTTAAAAATGAAATTAGATTGCCGTC GTAGTATTGCAAACTAGCTGAAAGCCCCCTATTATGTAGTTTTAATCTCTGGAAGGCTTCATAAACAAAAGGAACATTCT AATCTTGATTAAAAGATAAATTAAAAATTTGAGCTTGATATCAGTTTCAAACTTCGGGTAGCTGTGAGGTGCAGAAAAGT ACGGTGAAAGGAATCTATGTTCATTGTTTGGCTTCATTAGATCTTGGCCCCGTTTGGAAAAACAGCTTAATTAAGCGCTT ATGGTCATAAGCGCTTATGACATAAGCGCTTATTCATAAGCTATTTTTAAAATTTTATTGAAATAAATTAAAAATAAGCT GTATATAAGCATAAGCTGTTTTTCATAAGCTGTCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGCTTATGGCAGGCCA TAAGATGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTTATGCTGTCAGATAAGCTTAAATAAGCTCTTCCAAAC TGGGCCCTTGTATATCTGTTGGTTGTAAAGTTAATCAGCATCGATTAATCTTGCAATAACATCTCAAGGAAAGTAGGAAA CTATATCTTAAGGGATCTCAACCCTTTTTTAAGCTATCTTGTCCTCTGTAGTCTGTAGTAGTTTCTGTTATTGATGAGCA CACAATTAATACAACAGTTAGTCTTTTACTTGTTATGCATTTGGATAATTCTATGCATCTTTACTGTTAAAAACATCTTG ATTTGTTATGATTCAGGGATTGTGAGGGGTATTGACACAATCAAAGGTGTGCTCTATGTGATTACACCTGTGCCACATAG TTCTCTGGATAAAGTCAACCTCTTGCTACAAGGTTATATCCAAATTCCCATTTGTTTATTGCAGGTAAGAGATAGTTTTA TATCCTTTTCCTTCTTAACAGTCTTATAG
CDS sequence (LotjaGi1g1v0185900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATATTTCAGACAGTGCTTTCCCAGTGATTCAGATATTTCTACAATCAAGGAACTTGCACATTCGTTGGCCTCCCA CTGTCCTTATGAAGTTCCCATTGCAAGCATAAAGATTCAACATCTTCATCGTGAGGTCCCAAGCTCTGAGATGTTCTACA GTTTGAATGCTAGCATTGTTGGTTTAGCAGTTGATTCTGAAGGACCTGAAAATTTACCTTGGTGTCTTGGTCTTGGGATT GTGAGGGGTATTGACACAATCAAAGGTGTGCTCTATGTGATTACACCTGTGCCACATAGTTCTCTGGATAAAGTCAACCT CTTGCTACAAGGTTATATCCAAATTCCCATTTGTTTATTGCAGGTAAGAGATAGTTTTATATCCTTTTCCTTCTTAACAG TCTTATAG
Protein sequence (LotjaGi1g1v0185900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYFRQCFPSDSDISTIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPWCLGLGI VRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVRDSFISFSFLTVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 1.6E-38 | – | |
| PANTHER | 1 | 131 | 131 | 1.6E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0185900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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