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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0240200 |
Transcript ID | LotjaGi1g1v0240200.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein ROOT PRIMORDIUM DEFECTIVE 1; TAIR: AT4G08940.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|A0A0L9UFN3|A0A0L9UFN3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0240200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:57295969..57302787) extracted from Lotus japonicus Gifu genome v1.2.
CCACGTTAGCGGGACCATATACAAATTAATCTCTAAAAAAATGTTGTTACACAATTTTAACATCACAGCGTGCGTTTAGT TTCAAGTTGTGAGGATGCGCTTTCTCTACAACCCTACCTATAGCCATTGTTAACTGATGATGAGTCATCATTTAGATTGA TTCCATGGCTTGGCGCTTCTTCTCCATCTTCAAATCCTCCAAAACCCTATCCCCTAAGAACCCTAATCCCAATTTCTTCA CTGCCCCATTTTCCACCTCCTTCTTAGTCACCAAAACCCCAAAAAAGCTCAAGAAAAAACACAAACCCAAACACAGTCCC CGAACCAACCCGGTCCAACCACAACCCAACCGCATCGCCGAACTGGAACGTATCCTCGACCGGGACGCACTCCTCCGGTT CGTCACCAAATCGAAGCAGTTCCTCTCCTCCCAGCCGGAGCATGTCCTCCGCCTCGACGACGCTGGGAAGCTCCACCGCG AGCTCGGCTTCCCTCGCGGCCGCAAGGTCTCCCGCTTCATCCAGGACCACCCGCTCCTCTTCCAGACCTACCGCCACTCC GACGGCAAAATGTGGCTCGGGTTCACCGACCTCATGGAAGATCTCCTCGCCGAGGAGCAATGCATCATGGACTCCATGGA GAAGGATCGCGTTGACAAGGTTCGGAGGTTGCTGATGATGTCTGCGCGTAACCGAATTGCTTTGAGTAAGATTCACCATT GTAGAACCCTTTTTGGAATCCCCCATGATTTTCGCGACCGGGTCGCGAAGTACCCGGGGTTTTTCCGGGTTGTGGTGGAG AGTGATGGGAGGAGGGTGCTTGAGTTGGTTAATTGGGACCCTGTTCTTGCGGTGAGTGCGCTTGAGAGGGAGTTTGTGGT TGATGAGGATGGTGCTAAGAGGAAATTTAGGTTTCCAGTGAAGCATGGGAAGGATTTGGATTTGGAGTTGGATGATGAGA GGAAGCTGAACCTGTTGAACACGCTTCCTTTGGTGTCTCCTTATTCGGATGGGTCGAAATTGGATGTGTGGACCTTGGAA GCGGAGAAGTATAGGGTTGGGGTAGTTCATGAGTTCTTGAATTTGACCTTGGAGAAGAGGGCCTCCATTCATCACCTTGT GGAGTTTAAGGAGGAGTTTAGTTTGACTAAGCATACTTATCACATGCTTCTTAAGCAGCCCCGAGCGTTTTATTTGGCCG GAACCGAGATGAACTGGGCTGTGTTCTTGAAGGATGCTTATGATAAAAATGGTGTTTTGATTGAGAAGGACCCCCAGGTG GTGTTCAATGAGAAGCTTTATAAGTATGCTCTCATGCAGGAGATGGAACCTGGTTCTGATGTTGGGATGGAAAAGCAACA TTTAACTTGAGTTCATTGATGGTTTATGTGTCCTTACTGAGTGAGAAACACTTCCAAAGGGATTTTTATATTAAGGAAAA GGAAACTAATGGAGGTCTTCAATTAAAGGTGCTCTGGCCTCTGGAACCGGAATGAAATGGCTGGGATGTAAAAGGTGTAA CTTTTTCATATTTTGATTCCAAGAAGAATGAAGAGGTCTGGGAGAAATTTGAGTTTAATGTCGTGTTAGACTGTTAGTGA TAGAGCAGCATTCACTCCCAAGAATTGCATAGGTGGCGAGGATTTTAGGTTCGTCAACTTTACCATTTTATCTAGGTATA CCAGGTTCCATAGTTTCAACTTTCATCTGCTATGAAATGCTAGGAACCTGTCTTGTTTTCTACTATGTTATGTACATATA TTCATGGTTTCAGACCTCTGGTTTTAATGGGACCATGACTTTTATTAGACTGTTATTAAGAGTCATCATCATCCGGGCTT GCTATTTGATTAACTTTCAAAAATCGTTGAATTAGGTGCAACTTTTAAAATTAGATGTCATAAACCGGTCTGTTAAAATA AAGCTTATGGGGTGCTATCTCTTTGTCTTTTGTTGTTCATTTTGTTCCTTGATTGTGTTTGGTTTTGAAACATTTGGCTA CTACAGAAGTATTACGTTTATCAGCAATTAAATTCCATTTTCAAGTTTCATTCGTGTATTTGAGAAATGATCAACTTTTT AGAGTAAGAGGTGTGATCGGACTCTCTTTCACTCTTTTTGACACATTCTCGAGTATTACACCAAATTGGGAGTGAGAGAA GTACTGTGAGATCGGCTTTATGGATCACCGGCTGCCAGTGCGCTTAATCAAAAACCTTTTTTTCTGGGATATTATTGACC ATGCAGTTACTTTTAATCTAGGTTGTCAATCGCAGCGGTGCTGTCGTGTGAGAACCTTGGCATGAGTCACGGGCATACGC TGGGACAACAAGCCCCATTACATCCCACTTCAGCGCGCGGCTGATTTCGCGAATCTTCGCGTGAGATCGCGCCCCCATTG CTTTGGGTTCACCTGCGAGGTAGAGTCTTGCAAGCAACAGACCAGATTGTTTTTCAGTACTATTTAACCACTTCGGTTCA TCCACAATTCATTAATTTTTCATGGCTTGAATTGCTGAGTGCAGTGCTAGGATCTCTGCATCAATTTCACAGAATACGCT TGCCAAGGTATTTCTTGCAACAACAGGAAAGGAAAACGGGCCACTTCATTAGAAGCAAGAAGATTTGTTTAGTAGGATAG ATCAGTGGGGCAGCTTGAATAAAATGTTCTTAGCAGTCTTCTTCAGCATCAGGTTTGGTGTGACGTTAATTCAAATAGAC GCCACAGGTATTGCTGTTTTCTTGTGGCATGTTTCATTTTAAGTTACAGGCTTACAGCTGAGCTAAACTTGATAGTGCCT CCTTTGAATTCTTAAGTTGTCATAGTATTTGCTATGCACAGGTTTGAGTGATAATGATGGTGAATTGGTGACAACTTCAG CAATTCATACAACCATACTTGAGTACATGATGCGTATAGATTTTGCGAAACCAGATAATGATATCAAGTTTCACAACATT GTAAATAATGAAGATTGCATTACATCAACTCTTAAACCAATAGACTGTTTTCATAGTCTCCTTTGTGGAATATATCAAAC GCTCACAATAACGGGTTGAAGGAAACACATGTCGTATTTCAACACCAGCCATGTCCCACTGGGTGGGTGATAGGTTGAAA CAAAACAGCAAACCTGGTGCTGGAAAGGCCCTACCATGGCAAGATCTAGGGAAGAGAAACTTATTGTGGGTTTATTGTAA GGTAGATTTACCTTGGATTTACAAGAGGTTGATTACATACCTTGAACATGAGACCTCCTTGGCACAGGACAACAAACCTT ATAATTCCAAGTCTCCCCCTTCCAGCAGGTTGGGGCAAAATAGGGTAAAAACATATTCGACGAAATATCAAGTCTGAGAA ACATAAATACTCCTTTTACTGACAACTAATGATGTTTAGTTTGGCTCCTTGACCGTTTACTTTTCTGGACACCACTAGCA CTGCCTCTATGCACACTGGACGAACTCGGTCCTCCTTGGCTGCCTTTCTTGAGTGCTCTTTTGGAAGAGCCTCGGTTGCT GTTCCCTAGTGCAGCTTTGGCTACACTATCAGTGAGTATTTCACGTGCCCTTTGAGGGTTGATAGATTGCTTGTTCAGGT ACACAAGCTTTGGAAGAAGACCGCAAACTGCTTTGCGCAGCTGGTCATCATTGATGTTCCTTTGAATTGCATTTCCAAGC AGATTCAGAGCCTGAAGTGTGTTGTAGTTAGCCACCAGCTGGCCCAATGCCTTTGTTGTTGTGATCTTGTTGAAGCTCAA GTCCAGAACTGTTAGCTTCAGTAACCTGTGCAGCCCCTCAACATCACTTATCTTGTTTCCGGCAAGATATAGCTCCTTGA TTTGTGTACAATTTGATAACCCTGATAAAACACGGTGGAAATTTGTATTGTAGTAAATACTTAATGAAAGGTAAGGAATT CAAGAAGTAAACTCATCTATTGAGCTATAGGCAATATATGAACTAACCTTGTCCTATCCTTGAGATACGATTATAACTTA GGTCAAGTACCCGCAACCGGGTTAATTCTTTGAGGCCCTCAACGGTGCTGATTTTGTTTCTTGACAAATTAAGTGTATGA ATACCCTTTGGGAGAAATGCAGGTGTGATGTGAACTGCAAATTAATGAACAGAATCAATGAGTTAGATAGTATTATTACT CTTATTTGATGTTATATTAAGGCTTACTTAATTTTCTCAAACAATTTATACCTATGAAATTGCTTGACAAATTGACAGAG CGGAGACTGGAGAAGTGTGAAATAGCAGGGATGGCTTTTATTCCAATGCCTGATATGTGAGCTACAGTTGAGGCTGGATT CAGAGACTGTACCACGCTATTGGCAATCAGAATTTCCTTTGAAAGATTTGCATCTGGATGTCGAACCAACTGAGTTGTGC TTCTTGCCATTGATCTACCAGTTTCAGGTGAAGGTGGGAAGATAGTGCTTCCAATATCGTCATGATCAAAATCCTCCTCC TGAGGTGTCTGCTGGATTTCGAGATTTCTCACCCACTCATCCACTCTGTTAAAGGAGGAGGATTCTGTTGAGAAAGCTAC CCATTGGTTTTGTGCCCAAAAACTAGTGCTTTCTTTCTGAAATCTGCTCCACCTTTGGTTGTCGATATTTTTATCATTGA AACTTTTGGCAAAGTACTCCCCAGAAGATGACGCAGGTGAGGGTGACTCCACATGTCTCCATGCCTTACCATGTTTAGGT TCAAGGGTGTCCGAAGAGTACCCGCATTGTCTATTTAAAGCAGCACTTGCAGGATGTGATTGTGGTAATTTGCTTAACTG AGGTCTGTGTATATTTCTGTGGTTCCAGAGGAACAACTTCCACCACAATCTTTTACTTCCAGAAGGGAGAACATGACTTG ATGAATGCCGTTTCAACATCACTCTATCAGCACTGCAGCCTGTCATCACAGACCTGGGGCTTTCTAGAACACCCATCTGA TTTACTGATAATTCCTGTAAATCCTCAAAAGACTGTGACTTTGGAGATGGAAAGTGATGAGGTGTCTTCCTCAGTACATC CCTTCTTTCCAGGTTAGACCAAGATCGCGTGAGCTTTGGAGAAGCCCAGAAGTCACCCTTGCCAATCCCCGGATCACTGA CATGTCCACTTTGGATTAAATCAACACTCTTTTTGCTGTATTTATGGTATTTGTCTTCTAATTGAATGGTGGCTTGGCTT TCATGTAAACTGGGGTATTCTACCTTTTTATCTGCTGGATCGCATCCTTCACTTGCAACAGCTTCATGGGCTTGTAGATC AAAATCAGAAAGCTCCCTCTTGATGGAGGGTGAATCTTCATGCTCATCTTCTCCCTCATAAGCATCCTCTGCTTCAGTCT TCACAGGACTCTCAAGATTCATAATCTTCTCATTGTACTTCGAATTCTTCTGGACACCACAGGAGACTATAACATCAAGG GTGGCTGGCTTCAAATCACGACTCATCCTCGGCTGCTGTTCTTTTACAAGTGGAGCGTGAAGGTCCCCTTTTGAATATCG TTTGCTGCTGCCCTGAAGAAGCAAGCAAAAAAAGACCCAAGCAGGTAAATTATATAGTCCACAGTCACACCAACCAGGCA ATAACAATACTAGACACAATATCTGAACATATTTTTACCTTGTTCTTCTCCTTCCATCCAGTCAAAACAGACACACACCT ACACATGGCCATGGCAGAAGATAAAGCTTGTTTCCTTTTTATCCAATCTTCTTTGCACTTTCAAACTTAGTACTAGTTGT ACAATTTTGTTGTCGCTCACATCTCTACATCTCTACTCTGATAGTTTAGCAAATAACCTAGCGATTGTTTGAGAGAATGG AAAATCACATTGGAGAAGAGTGTATCAGAAGTTAGCCATAATCCGTTGGAAGACGCAGGACAAGTGACAGGCCCCAGTCC AAACAAGACCTGGATCCAGAAAACCAAGGACCAACCCCTGCTACAGTTGGTGTTGAAGGTGTAGAGTTGGCCAGAGTTGT ATATGCTGAATTGCTGATGCTGCAGCACTTCAAAGCTCCATGAATATTTGTCAATCGAATCAGACCTACACAATTGAAAG ACCAACCAATCATTCAGGTAAACAAATATGCCAACCAAACTTTGATTTGGGAAAATTCCTGAATTCCCATCAAAGAAACT AAAATTGCAGCCCCTGAATAAATTCCTTTGGAAAGTTGTATTTAAATGACATGATATCTAGAGCTTGTGCAACACACAAT TGAAAAATTATTTATTGTGTTGAGGGGTAGGCTGGGAATGCAATTCGATCATCTTTCCTGAGGTTTTGAAATTTTTGACA AAAACAGCATAGATTTAAGTCATTATTTCAATGGTAAAAGGAATCAGGAGCTAACCCTGCCAAAATGAGAATGTTCAGTG ATTGTAAAGCAGATTTTATACAGATACTGCTTCACGCATAAAGAGAGAACATTTATTGTAAAAAGGCGAACCTTTTGCAG TGGAATTTCGCCAGATTGTCAAACCAGTTAAGGACCTGAGATCTGTTTGTGCTGATAGTTCTTAGAAGAGCATGATTGTG TTCTGTTGTATCAGTGTGGATAAATCAAACAAGTAAAATTGGAGAGGTTGAGGGTGTTGTATTATTTTTGGAAGTGGTGT GTGGGTATTATTAAATGAAGAGTGCGGTTAGAATAGGTTTTGAAAAAACAATGACAAACGCGCAACATACACGGGGTGTT CGGTTATGTGTTGATGTCTGTGAGGTCACTTCTTCACAACCACAACACTACAATATGTTTTTTTTGGGTTGTCAAAATTG TTCTCACAATTCCGATTTG
CDS sequence (LotjaGi1g1v0240200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTGGCGCTTCTTCTCCATCTTCAAATCCTCCAAAACCCTATCCCCTAAGAACCCTAATCCCAATTTCTTCACTGC CCCATTTTCCACCTCCTTCTTAGTCACCAAAACCCCAAAAAAGCTCAAGAAAAAACACAAACCCAAACACAGTCCCCGAA CCAACCCGGTCCAACCACAACCCAACCGCATCGCCGAACTGGAACGTATCCTCGACCGGGACGCACTCCTCCGGTTCGTC ACCAAATCGAAGCAGTTCCTCTCCTCCCAGCCGGAGCATGTCCTCCGCCTCGACGACGCTGGGAAGCTCCACCGCGAGCT CGGCTTCCCTCGCGGCCGCAAGGTCTCCCGCTTCATCCAGGACCACCCGCTCCTCTTCCAGACCTACCGCCACTCCGACG GCAAAATGTGGCTCGGGTTCACCGACCTCATGGAAGATCTCCTCGCCGAGGAGCAATGCATCATGGACTCCATGGAGAAG GATCGCGTTGACAAGGTTCGGAGGTTGCTGATGATGTCTGCGCGTAACCGAATTGCTTTGAGTAAGATTCACCATTGTAG AACCCTTTTTGGAATCCCCCATGATTTTCGCGACCGGGTCGCGAAGTACCCGGGGTTTTTCCGGGTTGTGGTGGAGAGTG ATGGGAGGAGGGTGCTTGAGTTGGTTAATTGGGACCCTGTTCTTGCGGTGAGTGCGCTTGAGAGGGAGTTTGTGGTTGAT GAGGATGGTGCTAAGAGGAAATTTAGGTTTCCAGTGAAGCATGGGAAGGATTTGGATTTGGAGTTGGATGATGAGAGGAA GCTGAACCTGTTGAACACGCTTCCTTTGGTGTCTCCTTATTCGGATGGGTCGAAATTGGATGTGTGGACCTTGGAAGCGG AGAAGTATAGGGTTGGGGTAGTTCATGAGTTCTTGAATTTGACCTTGGAGAAGAGGGCCTCCATTCATCACCTTGTGGAG TTTAAGGAGGAGTTTAGTTTGACTAAGCATACTTATCACATGCTTCTTAAGCAGCCCCGAGCGTTTTATTTGGCCGGAAC CGAGATGAACTGGGCTGTGTTCTTGAAGGATGCTTATGATAAAAATGGTGTTTTGATTGAGAAGGACCCCCAGGTGGTGT TCAATGAGAAGCTTTATAAGTATGCTCTCATGCAGGAGATGGAACCTGGTTCTGATGTTGGGATGGAAAAGCAACATTTA ACTTGA
Protein sequence (LotjaGi1g1v0240200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWRFFSIFKSSKTLSPKNPNPNFFTAPFSTSFLVTKTPKKLKKKHKPKHSPRTNPVQPQPNRIAELERILDRDALLRFV TKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEK DRVDKVRRLLMMSARNRIALSKIHHCRTLFGIPHDFRDRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALEREFVVD EDGAKRKFRFPVKHGKDLDLELDDERKLNLLNTLPLVSPYSDGSKLDVWTLEAEKYRVGVVHEFLNLTLEKRASIHHLVE FKEEFSLTKHTYHMLLKQPRAFYLAGTEMNWAVFLKDAYDKNGVLIEKDPQVVFNEKLYKYALMQEMEPGSDVGMEKQHL T
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 21 | 393 | 373 | 5.5E-210 | – | |
PANTHER | 21 | 393 | 373 | 5.5E-210 | – | |
MobiDBLite | 38 | 52 | 15 | - | – | |
MobiDBLite | 38 | 60 | 23 | - | – | |
Pfam | 63 | 385 | 323 | 3.6E-100 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0240200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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