Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0277100
Transcript ID	LotjaGi1g1v0277100.3
Related isoforms 3	LotjaGi1g1v0277100.1 LotjaGi1g1v0277100.2 LotjaGi1g1v0277100.4
Lotus japonicus genome version	Gifu v1.2
Description	Hexosyltransferase; TAIR: AT5G53340.1 Galactosyltransferase family protein; Swiss-Prot: sp\|Q94F27\|B3GTB_ARATH Hydroxyproline O-galactosyltransferase HPGT1; TrEMBL-Plants: tr\|A0A072V0A6\|A0A072V0A6_MEDTR Hexosyltransferase; Found in the gene: LotjaGi1g1v0277100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:67826062..67831758) extracted from Lotus japonicus Gifu genome v1.2.

CACCGTGTTTATCTCATCAAAGAACTCGATAGAATCACTGGCCAGGTCACTCCCTACTCTCTCTCTCTCTCTCTCTCTCT CTTGATTCGTCCTCACTTCAATTTCAATCACGCTTTTTTGATCGCTTCTCACTCTCTTGCACCGGATTTGCTATGAATCA TTGTGAATTCAGTTACTTGAAGTTAGGGATCCGATCTTCGAACTGTGAATGCGTTTTCCTTGTTTAGTGTAATTGCAGTA TCAATATTGTTGCATTTGAGTTTGATCTCATAGTATGATTTTGAGAAATAGTTTATTTCGTTGCTGAATGACTCACTGTC ACAGTAGTTTACTTGAGCAAAGCTATGTGGCGCGATCAATTCGCAGATGAAACCGGCGAAAACCACATCCAATGGCTTAA GTTAAATAAGAAATTGACAACACAGGGATAAAATTGCAAGCTGAAACTTAAACACAGGGATATATACTTAAGTCGTGAAT GGAATCCATCGTGGTATTTAGTTTTTTCCTATTTACTTTGACCTATTTGAGTTGAGATCACTCTGTCAGGGACGTATATA TATGTTTGACACATTAGGATATGGACATGTGTTTCTACTTATTTTTCTGGCTAAGTTAACCACAAGATTCTTACTTATTC TAGGGACAATCTGCTATATCAGTGGATGATACATTGAAGATCATAGCCTGCAGGTGAATTAATTTTTCTTGATAGAAAAT TGCAAAAAGTTATTGATTACTATTTCATTTTTTTTTTTATCTGCTTTTGTGTTGATATAAGCTTCTTAACTTCTTTCATG ATCGTACTGTTTAATTATGTGATCGTTCAGGGAACAACATAAGAAGCTTGAATCCCTTGAGATGGAACTTGCTGCAGCTA GGCAGGAGGGTTTTGTTTCAAAGCCCTTGATACAGACTAATGGGACTTACTCTGAGAGAAGGCCCTTGGTAGTGATGGGT ATACTAACAAAGTTTGGCCGCCAGAAGAATAGAGATGCAATTCGCAGGGCATGGATGGGAAGTGGTAATTATATTCTTTG CTTTCTCTTGCTCAGTGATGAAAGTCTGTAACATTGTGAATAACCCTGCCTCAAATATATCTAATCTGAGTCTTGAGTAT ACAGTTACGTATATAGTCATTTAAAATGAACAATAAAACAGAAAATATGAAACTTTATGTAAAGAATGCTTAGTAAAGCC TGAACTCTGAACACTTAATATATCATGATGCTATATGGAAAGAAAAGTTCCACAGGGAAATCTAATGAATGTGTAGTAAC CAATCAAGAGAGGACTGATAGGAAAACATGGGTATGGCCGTACGGGTGAAAATACATGGGGAGGTTTGAAAATCAATTTA CACTCTTTGTAGTATTGTATAGTTTCGTCCTTCAAATCTTTGTGCCATCAAGTGTTTTTCATCACTTATTACTTACATCA TGAGCTGATGCGAGTACAATAATAAAATTATGGTCTTTTTTTCATTACAGCTGCACGTCACCCATTGATAATGAGTTAAG GTACAGATAAAAAGACATGAGGACCTTGGCATTTTTAGTTTCCTACCTCTATGGAGAATGCTTCTCTCTTTGATTTCCAT ACTAGAGAGGAATCAGCTTCTTCTTATTATAATATTTTAATTCCTTTGATACCTGATATCTGATATTAAATAAATAAAAT CAAATGTAACTCTGTTTTATAGTATATTGCGTTCAATGATTTATTTCATGGATCCTGAACTTAGTTATTTCTTTGGTTCA TGATATATTTAACTTTCTAGTGTATTTTGGATTGTTTGTTTACAGCTTTTTTATAAAATGGGTTACAGCTTTTTGCACTA AGATTGTGGTTTAGAAGAGGTTTTAATTTTAAAGCACTATATTTGTAGGTACAGCTTTGAAGAAAATAGAAGATGGAAAG GGCATTGTTGTGCGATTTGTTATTGGTAGAAGGTTTAAGTTCTTACTTTAGACTTGTTGGGGTTGGGGGTGATTCCGTAG GAACCATCACTTATGAATTACGAATGACTTTGCAGTTCAAATCGCGGGGACAGTCTGGATAAAGAGATTGATCGAGAGAA TAGGCTGAATAATGACTTCTTAATTCTTGTATGTTTGACCAATTTATGAATTTTATTCCTTAATGTGCTTACAAACTTTC TATATTATCCAGACAGAAAATTTTACAGGATTTGATTTTATACTTATATCATTTGGCATTCACTTTTCTGTAAAAAGCAA GTAAATTTTCTCATTCTGAATTTGACCTGAAGCTTCCAGAACACTGTTGCAATCAGTTTGTCAGCAGTTTCAGAAACCAC TGTTGTGTTTTGATAAATAGTTTTAACACTGAGCATTTTATATTTTATTCTTCTAGTTCCAATGTTAAAATTGCACTTGT TGTATTGAAGCATTAGAAAGCCAAATACTGATCATATTTGAGATGAAATCAATTTGAATGGTGTACTCATTGTGTTTCTT TAGAGTAGTTTAAATTAGCAGGCAGATATGAGGTTAAAAGTAATACATTGGCACTTATAGTTGCCTAACATCGTTAATTC TTAGTTCTTACTGCTTACATAACGTTTGTGATTTGCTTCCTCTGAGTGGAGCAGGTTCAAGAGCATTAACTTGTTACCTC ACCACCTTCAACAATTATGTTGGCAGGATGATCATGTGGAAGAAAATGCTGGATACCCAAAGAAGGCTAAATTGTTCTTT GCTCATGCTGCAGACAAATGGGATGCGGAGTTTTATGCTAAAGTCAATGATGATGTTTATGTAAATATTGGTTAGTTTTT CTTTGACTGGTTGAGATGATAACTTTTTCAATGCAATTTACCTATTATTTCACTGTTGTTGTTGTAATATGTTCCTTTTA TTTGTTAATTGAAATCCACTGCTAAATCATTCCATGTTTTAGAGAACTCCATTGTTGCAGATGGAAAATGATCTGCTTAT AAAAAAAAGATGGAAAAATGATCTTATGACATTGATTTTCTGGTCAGCATATAGAAAGTAGTGGCAATCAATGATCATTT ATTAAATTATGGATAATTTTACCATTTTTTAAGTCCTAGTATAGCTCATGTTGATGGGTTTCTAGGAAATAGCAGAAATC CCTGAAAATCACTTTTTCTCATAAGCTACATTTTGAAGCTTCTTAAAAAACCCACTGTGATTGAAGATGGAGATGAAGAT TGGGAATCAGGTTTTGAATTTTTAAGGACAATATTATCCAATATGATTTTTCATATTTACAACCCCCGTCCTCACCTCTA TGTTCCTCTCTCCTTGATAGTTCCTGGAAATTCTCTAACAATTTCTCATGGATTCCTCTCTGCATCTTGACTTGGAATCT TAGCTAGGTCCATTTATTCTTCAATTTTTCAATGCCCTATCTCTATTTTTGTTTTTCCAGCAGCATATTTTTTTATTTGA CTTCTGCTTTCTTTGCCATATGTTTGGTTGCTTTTCCTAGTCATGCCTTTGTTTTGAAAATTGTCGTCTTCTTTTCCGAA AGAGTGAAAGTATTGAATTTTTATTGGATTTACCTGAGATGATGTACCCATTATCCCGCAAGGAGTTGTTTACTGTATTG TTTTCTTTCGCTCGGTCGTGGTTTTAGAGAATAATCAGAGGCTGTAAGCTTGGTCTGTTAACGTACTAAATTTTTCTTAG TTACATGAAATTGTTTACATAGATCATCTTGCAGTTGTACATAATAAAATTTTGCATTATGGCCTTAAAGTAGCTATGGA ACTGGGGGTTACTTTTCTGTTAAGTTCATCTTTAAAGCAGTTTAACTGGAAAATATCAATCTTTTGATGGCAAAGGTTTT TGCACTGCCCTTGTAATAGGTTTCTGTCTTTTTATGGTTTCTACTTTCTAGTCTGTCCTTCGTTGCCCTATTTAATAAAA TTCCAAAGAGGTTGCTTCAAATTTTCAGATGGATATATGTCTTGCAACTTAATTGATTCTTCCTTTGCAGATGCCTTGGG AGCTACACTAGCAAATCATTTGGACAAACCTCGGCTTTACATTGGATGCATGAAATCAGGCGAAGTTTTTTCTGAGCCGT GAGCCCCTTATCTTGTTCAAACTTTGAAACGTCATTTGCTTTATGAAGAATTCATTTTATGGTTCTCATACTGGTGTCTG TGAATTATGGCAGGAACCATAAATGGTATGAACCAGAGTGGTGGAAATTTGGTGACAAAAAATCGTAAGCCAAGAAACCA GTTGTTTCATTTGATTGAACAATTGCACTAATTTTACAGCATGTCAAACTTAGATGAATTAATCATGTATGATACAGTAT TAACCAGTTTTGAATAGCTGCATGTGGATCCATGTTGAGTCCTTGTTTATTTTTCTTGATTATCTGCAATGCTATGCGTT TGTTGATCCCATTAGTAAAAAACTGCATTATGAGTTTTGATTTTGCTTCTCCAAACAATCTTTAGTGGAGAAGCCTATTA TGTTACATTATCATACTTCTGCCAAAATCCTATGGCCTTGCAAAATAGAACTCAATGTATCATCTATCATGTGATAGTTG AGGATTTAAACCAAGAGTTGGCCAGTTCAATATTTCGTTTGTCTGGTATTCTGGGCACAGATGTGGGTGCATTGATGTGT TTTATGTATCACAAATACTTATCTTCATATCTATTTATCTCGTAATGATTATTAAATCTCCTGTTTAACAGATATTTTCG TCATGCATCAGGAGAGATGTATGTCATATCACGAGCTTTGGCTAAATTCATATCAATAAATAGGTCAGATCCACTCTTTG CTTCGATTATACTGTTAGTTACTGTTCAATGCATCAATCTTGAATTCGTTTGAATTGGCAGATCTATTCTTCGTTCCTAT GCCCATGATGATGTGAGTGCTGGATCCTGGTTTATTGGGCTTGATGTGAAACATGTTGATGAGGCAAAGTTTTGTTGCTC ATCTTGGTCAACAGGTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCCCCCCCCCCCCCATGTTTGTGTGTTGCATGTCCACATGTGCTAGTTTAAAATTCAAGTTCATAAC ATAGTCTCGTAGCCACTGAAAAGACGGCCTTTGAGTAATGTGCAGAATTTACTTGACATGAATGGTTGGCATATGTGTCA AATTTAATTTGCAACTTCAAGCTAATGCAACATGGTTTTGTTTTTCAGGAGCAATTTGCGCAGGAGTTTGAGTTGATTCC AGTGCGTTCTTGTGAGAAGATTACCATCGTACCGAAGAGTCGCCCATTGTTAAAAGGTTTTCCTAAGATCTTTTCACCTT TATTGGAAGCTGAGTGATTCCTGTAGATTTTCGCTGGAAAATTGCTTCTAGATTTGAAGTCTATTCGGCAATATAGTTCC ACTAACCTGCGACCATAGTAAATTTGTGGGTTGAAGGCTTACTTGCAGTTATATGGCATGCAATATTGCAATATAGTACA GCTGATAAAGATTTGCCTTTTCAGCCATAATATAAGTTCTATCATTTTATAGTTGATTCATTCATTCATGGGCATAAAGG AAGATGGCTTTTCTTGTTGTAGATCCATAAATGTTACAGTGAAAGTATTTATAGGAAAGGTATTTGTACATGGCAGTGGC AGGGAATTTTGAGTCAT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0277100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACTTGCTGCAGCTAGGCAGGAGGGTTTTGTTTCAAAGCCCTTGATACAGACTAATGGGACTTACTCTGAGAGAAG GCCCTTGGTAGTGATGGGTATACTAACAAAGTTTGGCCGCCAGAAGAATAGAGATGCAATTCGCAGGGCATGGATGGGAA GTGCTTTGAAGAAAATAGAAGATGGAAAGGGCATTGTTGTGCGATTTGTTATTGGTAGAAGTTCAAATCGCGGGGACAGT CTGGATAAAGAGATTGATCGAGAGAATAGGCTGAATAATGACTTCTTAATTCTTGATGATCATGTGGAAGAAAATGCTGG ATACCCAAAGAAGGCTAAATTGTTCTTTGCTCATGCTGCAGACAAATGGGATGCGGAGTTTTATGCTAAAGTCAATGATG ATGTTTATGTAAATATTGATGCCTTGGGAGCTACACTAGCAAATCATTTGGACAAACCTCGGCTTTACATTGGATGCATG AAATCAGGCGAAGTTTTTTCTGAGCCGAACCATAAATGGTATGAACCAGAGTGGTGGAAATTTGGTGACAAAAAATCATA TTTTCGTCATGCATCAGGAGAGATGTATGTCATATCACGAGCTTTGGCTAAATTCATATCAATAAATAGATCTATTCTTC GTTCCTATGCCCATGATGATGTGAGTGCTGGATCCTGGTTTATTGGGCTTGATGTGAAACATGTTGATGAGGCAAAGTTT TGTTGCTCATCTTGGTCAACAGGAGCAATTTGCGCAGGAGTTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0277100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELAAARQEGFVSKPLIQTNGTYSERRPLVVMGILTKFGRQKNRDAIRRAWMGSALKKIEDGKGIVVRFVIGRSSNRGDS LDKEIDRENRLNNDFLILDDHVEENAGYPKKAKLFFAHAADKWDAEFYAKVNDDVYVNIDALGATLANHLDKPRLYIGCM KSGEVFSEPNHKWYEPEWWKFGDKKSYFRHASGEMYVISRALAKFISINRSILRSYAHDDVSAGSWFIGLDVKHVDEAKF CCSSWSTGAICAGV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11214:SF74 View details on PTHR11214:SF74 Search for proteins/transripts with this domain View external data on PTHR11214:SF74	1	249	249	7.0E-137	–
PANTHER	PTHR11214 View details on PTHR11214 Search for proteins/transripts with this domain View external data on PTHR11214	1	249	249	7.0E-137	IPR002659 Show description in modal box View details on IPR002659 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01762 View details on PF01762 Search for proteins/transripts with this domain View external data on PF01762	43	236	194	1.6E-36	IPR002659 Show description in modal box View details on IPR002659 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.550.50 View details on G3DSA:3.90.550.50 Search for proteins/transripts with this domain View external data on G3DSA:3.90.550.50	103	232	130	3.2E-6	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006486 View details of GO:0006486 AmiGO InterPro QuickGO	Biological process	Protein glycosylation	A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.	Subterm of View details of GO:0006464 View details of GO:0043413 Part of View details of GO:0009101
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0277100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi1g1v0277100.3