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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0316000 |
| Transcript ID | LotjaGi1g1v0316000.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin; TAIR: AT5G09810.1 actin 7; Swiss-Prot: sp|P53492|ACT7_ARATH Actin-7; TrEMBL-Plants: tr|G7JAX4|G7JAX4_MEDTR Actin 2; Found in the gene: LotjaGi1g1v0316000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76224858..76226254) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGTTTGTAACTTTGTAGTTTT CTTGGTCATGTTTATGTGAATTTATTGATCTTAGTTTCTTTGCTGAATGATTTGTTTATTTGTTTGTAATCTGTGTACAG GCAGGATTTGCTGGTGATGATGCTCCCAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGT TGGGATGGGTCAGAAGGATGCCTATGTGGGTGATGAAGCCCAGTCTAAAAGAGGTATTCTGACTCTGAAGTACCCCATTG AGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACCTTTTACAATGAGTTGCGTGTTGCTCCT GAGGAGCACCCGGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGA GACCTTCAATGTGCCTGCCATGTATGTGGCAATTCAGGCTGTCCTCTCCCTGTATGCAAGTGGTCGTACAACTGGTGTGT AGTTCTATCTGTCTTTCTCGGTTCATACTTTTATCATTGTATCATTCTATCGCTGAATCAAATTGTTCCTGTAACAGGTA TTGTTTTGGATTCCGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAAGGTTATGCGCTCCCTCATGCTATCCTTCGT TTGGATCTTGCTGGTCGTGATCTGACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGTTACATGTTCACCACCTCAGC TGAGCGGGAAATTGTCCGTGACATAAAGGAAAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAA ATAGCAGTTCTTCAATGGAGAAAAACTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGC CCTGAGGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACTACCTACAACTCCATCATGAA GTGTGACGTGGATATCAGAAAGGATCTGTATGGCAACATTGTTCTCAGTGGTGGTTCAACTATGTTCCCAGGTATTGCAG ACCGTATGAGCAAGGAGATCACTGCCCTGGCTCCCAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAGAGAAAGTAC AGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGGTGATTGTTTTGTCACATATTTGCTTTTG CCATTTTTTTCCAGTTAAGATCGAACTCTAAAACATGATTTGGTTTTGCAGATGTGGATATCTAAGGGTGAATATGATGA GTCCGGCCCATCCATTGTCCACAGAAAGTGCTTCTAA
CDS sequence (LotjaGi1g1v0316000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCAGGATTTGCTGGTGATGA TGCTCCCAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAGAAGGATG CCTATGTGGGTGATGAAGCCCAGTCTAAAAGAGGTATTCTGACTCTGAAGTACCCCATTGAGCATGGTATAGTCAGCAAC TGGGATGACATGGAAAAGATCTGGCATCACACCTTTTACAATGAGTTGCGTGTTGCTCCTGAGGAGCACCCGGTGCTTCT AACTGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGAGACCTTCAATGTGCCTGCCA TGTATGTGGCAATTCAGGCTGTCCTCTCCCTGTATGCAAGTGGTCGTACAACTGGTATTGTTTTGGATTCCGGTGATGGT GTGAGTCACACTGTGCCAATCTATGAAGGTTATGCGCTCCCTCATGCTATCCTTCGTTTGGATCTTGCTGGTCGTGATCT GACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGTTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACA TAAAGGAAAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAAATAGCAGTTCTTCAATGGAGAAA AACTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCTGAGGTTCTTTTCCAGCCATC TATGATTGGAATGGAAGCTATCAGAAAGGATCTGTATGGCAACATTGTTCTCAGTGGTGGTTCAACTATGTTCCCAGGTA TTGCAGACCGTATGAGCAAGGAGATCACTGCCCTGGCTCCCAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAGAGA AAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATATCTAAGGGTGAATA TGATGAGTCCGGCCCATCCATTGTCCACAGAAAGTGCTTCTAA
Protein sequence (LotjaGi1g1v0316000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETANSSSSMEK NYELPDGQVITIGAERFRCPEVLFQPSMIGMEAIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPER KYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 358 | 355 | 1.5E-244 | – | |
| PANTHER | 4 | 358 | 355 | 1.5E-244 | ||
| Pfam | 5 | 273 | 269 | 5.7E-96 | ||
| SUPERFAMILY | 6 | 155 | 150 | 2.59E-66 | ||
| SMART | 7 | 360 | 354 | 2.6E-216 | ||
| Gene3D | 10 | 356 | 347 | 1.9E-172 | – | |
| CDD | 10 | 183 | 174 | 1.87686E-18 | – | |
| PRINTS | 28 | 37 | 10 | 3.6E-56 | ||
| PRINTS | 51 | 62 | 12 | 3.6E-56 | ||
| ProSitePatterns | 55 | 65 | 11 | - | ||
| PRINTS | 63 | 85 | 23 | 3.6E-56 | ||
| ProSitePatterns | 106 | 118 | 13 | - | ||
| PRINTS | 117 | 130 | 14 | 3.6E-56 | ||
| Gene3D | 140 | 323 | 184 | 1.9E-172 | – | |
| PRINTS | 142 | 161 | 20 | 3.6E-56 | ||
| SUPERFAMILY | 148 | 360 | 213 | 1.64E-87 | ||
| Gene3D | 182 | 272 | 91 | 1.9E-172 | – | |
| PRINTS | 238 | 254 | 17 | 3.6E-56 | ||
| ProSitePatterns | 341 | 349 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0316000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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