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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0327800 |
| Transcript ID | LotjaGi1g1v0327800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxysterol-binding protein, expressed; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|A0A0B2PPT1|A0A0B2PPT1_GLYSO Oxysterol-binding protein-related protein 1C; Found in the gene: LotjaGi1g1v0327800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78241394..78245568) extracted from Lotus japonicus Gifu genome v1.2.
GTACTTATCAATACACTTATCTTAATCATGTTAGTCCACCTAGAATGAGTTTTTTAATACTTGAAGTAAGTTAGAGAATC CCATGAGTGAATGCATGTTAAACTGGTAAAGTTATTGCAATGGATCTGAATGAAGTATATTTGAACACCTTCTACCTAGA ACACATCTAATGGAAGAGAGCTGTAGCTGTACTAATTAGCAGTTTAGCACATTATGAATTCCTCTCCTTCATTTACAATT TGTAAGGCATATTACAGTTAATTTTATAATAAATAAGCAGTATTATTGTTTAGTTCCTTGGTGTATGGTTTTTCCTAATT GAGGTGATCATTTGTGTTTTCAATTTATGAGTAAATGGTTAATTTTGTCCCCCCAATTAAAACTCTTGTTCTTGGACTGA TAAACGAGGATATAATTTTTTCCTTGTGTATGTAAATTTTCTCCTGTTTTGTAGCACTCTAGCTATTTTTACTTTGTCTA AGTAAATTTTCCACATCTCAAATTAATTTTGCTAATTTGATACATGACAGATGGAAGTGGCAGTGATTACTCTGATGAGC AGGACAGGCATGATCCCTCTGATGATGACCGCGATGCATTCTTTGACACACTTGAAATTTTCTCAACAAGTTCAGTTAGA AGTAATGGATCAGACCAATGTGAAGAGAAAAGTTCAACTGGAAAACATGACCCAATGTCGCCCATAGGATCTGTTGGATT CAACTATCCTTACATCCAGCGAAGAATGAAGTTGCCTGATCCGGCTGAGAAAGAGAGTGCAGTCAGTCTATGGTCAATAA TCAAAGATAATATTGGGAAGGATCTTACAAAAGTTTGTCTCCCAGTTTACTTCAATGAACCCCTCTCCTCATTGCAGAAA TGTTTTGAAGATCTAGAGTACTCTTACCTCCTAGACCAAGCATGTGAATGGGGTAAAATGGTTAGTTTACATTTGCAAAA CATTGTGTGCGTGTTTGGATCAGCGTTGTGAGAATTAATTTTGGATAGAATTGATTTTGTTAAAATTGACTGTGGTAAAA GTGAGTTGAAGGTGAAGTGATTTCTATAGGGTAATGTTGTGAAATCTAGTAATGAAGTCCACAATTGATTATGGGTGCGT TTGGGTTAACAGCTCAATTAAGCATTATGGCAATAAGCACTAATCACATAAGCATTCATAAGCCAATTTGAGAAAATTAT TGAAATAAGCTGAAAATAAGTTATAGGTAAGCATAAGCTTTTATTCATAAGCTAATCTGAATAACTTACGAGAATAAGCT CAAAACAGCTTTATAGGTAGTCCATGAGCTATTTAATTAAGTTGTCCCTAACACTTGCATAAGCGTTTTTGCTATAAGAT AATGTCTACTGCAGAAACTCTAGCTTCTTTGCAGATTTGATTTTGGGACTAAATCAATTTGCTAAGTCGATTCCCAAATA TCTGTATAACCGCCTTAAAGGGATTCTGGTAAATGAAAGCTGATTCTAAGACTCATAAACGGGGAACTAAACACACACTT AATAGCATAGTTCACTAGCTGTTGTTTTGCCCGAAGTTTCAGGAACTCTTTTGTAATTAATCTCTCACATTCATGGTACT AATGCACAGGGTGACAGTTTGATGAGGATGCTACATGTGGCTGCATTTGCAGTTTCAGGGTATGCCTGCACTAGTGGTAG AAGTTGCAAACCATTTAATCCACTGTTGGGTGAGACATATGAGGCAGATTGTCCAGACAAAGGCCTTCAATTTATCTCTG AGAAGGTACAAATGTTTTGCACATTTTTCATTGTTTGTTTCATATTGTTTCCCAGTTAGGCACTCTTTCCTAGATAACTC ATGTCTCTTGATCAGTAAAATTAACTTAAGTTTAGAGGTCAGGGAAACAAGCGGATTCTAGTTGGATGTAAAATACTTAC GCTATTCGTCTTGAGATAGGTCAGTCATCACCCCATGATTGTTGCATGTCATTGTGAGGGCCGTGGCTGGAAATTTTGGG GTGACAGCAATTTAAAGAGCAAATTTTGGGGTCGATCGATTCAGGTTGATCCTGTTGGAGTATTGACTTTGGAATTTGAT GATGGGGAAGTGTTCCATTGGAGCAAGGTATACACAATTTTGCTTGACATTAGTAGTACTTACCAATATCTCTTCCAATA TGCATGCTGATTAGCTAATTAATTTTCAATGATCAGGTAACCACATCCATTTACAACCTCATTTTAGGAAAACTCTACTG TGACCATTATGGTACAATGAGAGTAGAGGGGAACCGTGAGTATACATGTAAGATCAAATTCAAGGAGCAATCCATCATTG ATAGAAACCCCCACCAGGTACCTTTACCATATCTCATTTTGATTCCTGAAAGATATCGGGTCGGTCACTTCAATCCCTGA AAGATACAAATCACCTTTTTCGTTTCTTGTAGATAAAAAAAAGCAATTAATGCAATCTTTTTACAATATCAATTTTATCT GTTAAAGGATTAAATTGATCATCTCTTCATCTTTTATGGACCAAAAACATGTAATTCCGTGTTTCAGATACTATAAATTA ACCGATCTGATATCTTTTAAAGACCAAAATGATGATTTACTAATTTTTCTGTTATGTAGTTCATAGACTGATAGACATAT TATGTAACTTATGCTTTATAATTTAAGTTCTGCTGCAGGTTCATGGCATAGTAGAAGATAAGAAAGGTAAAACGGTGGCA ACTATATTTGGAAAGTGGGATGAGAGTTTGCATTACGTAATTGGAGGGCATTCAGGGAAAGGATCCAATGTGTCAGCAAA ACCACAACTTTTGTGGAAGAGGAGCCCTGTACCAGAGTACCAGACAAGGTACAACCTCACACAGTTTGCTACTACACTGA ATGAAATCACACCTGGACTAAAGGTAAACTGTTTGAATATTGATTCAAGACCCCGTTTGGATACGAACCAAAGAGCACTT ATTGGAGTTTCTCTACTTGAAAATGCAGTATATAAGTTACAATAAATGTTCTTTGGTTCGCATCCAAACGGGCTCCAAGC GTATGAACAAGGTCCTATGTGGCTTGTACTAACATTTAGAGTTAACAAACAGGAGAAGCTGCCACCAACAGATTCCAGGC TGAGGCCTGATCAAAGATGTTTGGAGAATGGAGAATATGAAATGGCCAATTCTGAGAAGTTGCGGTTGGAACAAAGACAG CGGCAGGTACAATTCCTCATTAGTACTGCTTAGACACCCAAAACAGTGAAAACACGGAACTGACACTCCATTTTTCTTAT CACATCATATATTATATTTATTACTACTTCTCTTGCTTATTTTCCTTTCTCACTTTGAGTGTTTGTCGGGTTTCTGCATT ATGCGGATATCCACGAATCATTACTCTTTTACATTTGGAATTTAATTGGATTCTGTCTTGTAATGAAATGCATTATGCTG GTTAACATGCTGTTCATTAACTAAAGCCTCACTATAATTGTCAGGCACGGAAGATGCAAGAGAAGGGTTGGCAACCAAGG TGGTTTGCTAAGGAAAAAGGCAGCAACACTTACCGCTATGTTGGTGGATACTGGGAGGCAAGGGAAAAGGGGAGCTGGGA ATCTTGTCCTGACATTTTTGGCCAATTCTCAGCTGATCCTGATTCGACCCCAACTCCATAAATTATTAAGTGCATGTTTG GAAACTCTTCTACATTTGAAGCAAGAGTCTCAATTCTGGAGAGAAGTTTATGGGAGTAACTTCTAGGTTTCAGAACTCGT CGTGAAAGAGAAGCTGATTCAAACATGTTATAACTCTTTTCACTGAGATCCCGACCTAGTCCCCTCCCCACCAATACATC CCCTTGATCGTATATTCACAGCCATATTTATGGTCATTACTTCGTCGAGCATATAAAAGCCTTTTGTGTACTATGTATGC GTATATAGAATAGAGTGGTTGTTTTCAAGAAAGTAACTTCCACCACAACTACTTTTCTTGCTGTAAGATACTCATTTCAA AGACCCCATTTCAAACTCTAGGGTTTTGGGGTGGAGTTGAACTTTGAATGGAAGTCATAGTTGGTACACAACCAATACTG AACTAGTCATTCAAACTTTACATTACATTCTTAATGTGTAAAAGGAAAACCCACTACATAAACATGCACTTGTTTATGTT TATTCTAAAGTTCTG
CDS sequence (LotjaGi1g1v0327800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCCTCTCCTTCATTTACAATTTATGGAAGTGGCAGTGATTACTCTGATGAGCAGGACAGGCATGATCCCTCTGA TGATGACCGCGATGCATTCTTTGACACACTTGAAATTTTCTCAACAAGTTCAGTTAGAAGTAATGGATCAGACCAATGTG AAGAGAAAAGTTCAACTGGAAAACATGACCCAATGTCGCCCATAGGATCTGTTGGATTCAACTATCCTTACATCCAGCGA AGAATGAAGTTGCCTGATCCGGCTGAGAAAGAGAGTGCAGTCAGTCTATGGTCAATAATCAAAGATAATATTGGGAAGGA TCTTACAAAAGTTTGTCTCCCAGTTTACTTCAATGAACCCCTCTCCTCATTGCAGAAATGTTTTGAAGATCTAGAGTACT CTTACCTCCTAGACCAAGCATGTGAATGGGGTAAAATGGGTGACAGTTTGATGAGGATGCTACATGTGGCTGCATTTGCA GTTTCAGGGTATGCCTGCACTAGTGGTAGAAGTTGCAAACCATTTAATCCACTGTTGGGTGAGACATATGAGGCAGATTG TCCAGACAAAGGCCTTCAATTTATCTCTGAGAAGGTCAGTCATCACCCCATGATTGTTGCATGTCATTGTGAGGGCCGTG GCTGGAAATTTTGGGGTGACAGCAATTTAAAGAGCAAATTTTGGGGTCGATCGATTCAGGTTGATCCTGTTGGAGTATTG ACTTTGGAATTTGATGATGGGGAAGTGTTCCATTGGAGCAAGGTAACCACATCCATTTACAACCTCATTTTAGGAAAACT CTACTGTGACCATTATGGTACAATGAGAGTAGAGGGGAACCGTGAGTATACATGTAAGATCAAATTCAAGGAGCAATCCA TCATTGATAGAAACCCCCACCAGGTTCATGGCATAGTAGAAGATAAGAAAGGTAAAACGGTGGCAACTATATTTGGAAAG TGGGATGAGAGTTTGCATTACGTAATTGGAGGGCATTCAGGGAAAGGATCCAATGTGTCAGCAAAACCACAACTTTTGTG GAAGAGGAGCCCTGTACCAGAGTACCAGACAAGGTACAACCTCACACAGTTTGCTACTACACTGAATGAAATCACACCTG GACTAAAGGAGAAGCTGCCACCAACAGATTCCAGGCTGAGGCCTGATCAAAGATGTTTGGAGAATGGAGAATATGAAATG GCCAATTCTGAGAAGTTGCGGTTGGAACAAAGACAGCGGCAGGCACGGAAGATGCAAGAGAAGGGTTGGCAACCAAGGTG GTTTGCTAAGGAAAAAGGCAGCAACACTTACCGCTATGTTGGTGGATACTGGGAGGCAAGGGAAAAGGGGAGCTGGGAAT CTTGTCCTGACATTTTTGGCCAATTCTCAGCTGATCCTGATTCGACCCCAACTCCATAA
Protein sequence (LotjaGi1g1v0327800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSSPSFTIYGSGSDYSDEQDRHDPSDDDRDAFFDTLEIFSTSSVRSNGSDQCEEKSSTGKHDPMSPIGSVGFNYPYIQR RMKLPDPAEKESAVSLWSIIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDQACEWGKMGDSLMRMLHVAAFA VSGYACTSGRSCKPFNPLLGETYEADCPDKGLQFISEKVSHHPMIVACHCEGRGWKFWGDSNLKSKFWGRSIQVDPVGVL TLEFDDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRVEGNREYTCKIKFKEQSIIDRNPHQVHGIVEDKKGKTVATIFGK WDESLHYVIGGHSGKGSNVSAKPQLLWKRSPVPEYQTRYNLTQFATTLNEITPGLKEKLPPTDSRLRPDQRCLENGEYEM ANSEKLRLEQRQRQARKMQEKGWQPRWFAKEKGSNTYRYVGGYWEAREKGSWESCPDIFGQFSADPDSTPTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 11 | 465 | 455 | 1.3E-286 | – | |
| PANTHER | 11 | 465 | 455 | 1.3E-286 | ||
| MobiDBLite | 16 | 31 | 16 | - | – | |
| MobiDBLite | 43 | 67 | 25 | - | – | |
| SUPERFAMILY | 90 | 461 | 372 | 2.22E-121 | ||
| Pfam | 95 | 445 | 351 | 2.2E-128 | ||
| Gene3D | 181 | 346 | 166 | 1.2E-26 | – | |
| Gene3D | 390 | 448 | 59 | 6.5E-5 | – | |
| Coils | 398 | 421 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0327800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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