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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0387400 |
| Transcript ID | LotjaGi1g1v0387400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit beta; TAIR: AT2G25605.1 DNA-directed RNA polymerase subunit beta; Swiss-Prot: sp|Q5A0J0|U507_CANAL UPF0507 protein CaO19.5821/CaO19.13243; TrEMBL-Plants: tr|A0A1J7HQI6|A0A1J7HQI6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87074701..87077503) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACAGGGTAATCAGTTAACCATCTTCTGATAATAATCTCTCTCAATTTCTCAATTTTAATTTCTGTTTGCTATGCCT GGTAAGTGTTACTATTTACTAACCCTATCCTTTTTTCATAGTTTGCTGGATTTGATCCATTTGAAAGATCAACCTATTTT GGGCCATTCTTTGATCTGGGTCAGGTTAGTACTGTTCAAATTTTTCATTTCTCTATATATATTGATAGATTTTGACCTCG TCTGGAGGAGCTTATTTGAGCTTATCTTATAACATAAGCTCTTATGCAAGGGTCTGAGGGAGCTTACGTAAATAGCTTAT GACCTACCCATAAGCTGTTTTGAGCTTATTTCATAAGCTATTTAGATTATCTTATGAATAAGAGTTATGCTTACCTATGG CTTATTTTTCAGTTTATTTCTATAAATTTCTCATACTAGCTTATGAATGAGTGTTTATGCGTTAAATCCTTATGGCCCGT TTGGTGGTCAGGATAGAATATGATAGGATATGATATGTGAACATGATATCAACAGGATAGGATAAGAGCAGGATAGACTC TTATCATATCCTGTGTTTGAGGTGCACATGATAAGGACAGGATATGACAAGGAAAAATGCATCAGATTTATATTTGAATA AAAAATACATTTAAAATTGATCATTCTATTAAATTTAATTTATTTACATTTTCATGAATCAGTCTATATTTTAAAATAAA TAAAATTAATTTAAATTTTATTAATTAGCCTATTTTATTGTTTTGAAGATGCCCTATATTTTAAATAAAACTATGCAGTT AACCGATTGGTTTTCACTTAGTTGTGACACGTGATAATTAACAATAAAAGTTAATTAAATTAAGAATATTATTATTTCAA AAGTACTTTATATTTGAATTATAAATTATTATATAAGTAGATAAGTAGTTTTAAATAATAGGAGATAAAATAAAAAATTA ATCTATTACTATTAAAAAAATCAATATTTGTAATCAATGTTTTTCACTTAGTTGTGACACGTGATAAACAATAAAAATTA ACTAAATTAAAAATATTATTATTTCAAAAATACTTTATATTTAAATTATTATATAAGTAGATAAATAATTTTTAAATAAT AGGAGATGAATTTTTTTTTGAAAGATAGGAGATGAAAATATTGAATTAGTCTATTATTATTAATAAATCAATATTTGTAA GTGAGTAGTCTATTTTACTATTTATGAATAATAATTTTATTTATTTTTTATTTTAGTTAAATTAATATTTTTATATTTAT TAATTAATATTATTATAAATTATAAATTATATAATATTAAAATAAATTAATTTGGAGTTAGGATACCGAAAGAAAATATA TAACTGGTATCATATCCTGCTCTATCCTACTCCCCCTCAGGATAACTTTTACACATGATGGATAGGAGACAAGATAGTGT TATCATATCCTGCTGACGCAACAAACAACAGATAACAACAGGATATGATTATTATCCTGTCCTATCCTATCCTGTCCTGG TCACCAAACGGGCCCTTATTGTCATAAGCGCTTAATTAAATTGTTTACCCTAACACACTCTTTGCATATGTTGATTGATG GTGAACCGTGGTACACCTTTTCGTGTGCAGTTTGAAAGGTTCAGGCGTATTTTTCACCATTCTACTTACCGAGTCTTACT GGGTCACAAGGAAAGAAAGATTATGAGCAGTTTGTTTGTAGAGGAGGTAAAATTCTTAAAGTGACATTAAGTACATTTGG CACATTTCATTTACGAGTTTATGTGTACTTATGAATTTGTGTAATTGCCATGCCAATGTTTTGAGCTTCTAATACCTCGT GTTTTTATCCTCCTTCGTTCTTTCTTATTTTTCATATTTTACTCTGTTCAAACTTCAAACAGAACAAATATATGCAGCGG GTTTGGATTCGTGGAAGTCGACCAGAGGAAGAGGAAATATTTCAACTTACAATGACTCAGGTTTGATCATGATTCCTGCT CTTATATAGTCATATTATATAGCTTTTTTCTTTAATTTTGTGTACTTTTGCATTAATATAAATTACAGTATCACAATACT TGGATAAATAACAAAACTAGTATTTAGATAAACAACAGCATTTTACCTTGTTTACATGATTTGGCTCCTCTGAGGTTTGA AGTTTGAAGTTTAAACACAAAGCTGTTAGAAGCCTTTGGTATGACTTTTTTTATCTGTCCACAGAAAATGGGTTATACTT TATATGACCCAATGCCTGAGATATTTGCTATATGCTGCAGTCTAGAGTAGACTGTAGACTATCCAATGCATTATGTGCAT GTTTTGAATTCGGATGCATGCCTGGGAATAGTTCTGAATTGTGCTTTCATCAAACTGATTTTGCATGTTAACAGGTAGTT TTGGGAATTTGTTTAAGTGAATTGCTGCATGTGTAAAGTAAGCAATTACAATTATTGACTAAGAAATCAAATGAGATTTA AGGAATTTCATGATTTGGCTTATAAGTGCAAATATATAATCACAATCTTAACTTTCAATAGCGGTGATTATTTACTTTCT CCTCAGAGGAGCCAAATCCTTAACGTTGATAGTCCCTTTCTTAATTCAATGATAAATGATAATCTAATCTGTACTATTTT TTCTGACCCATGCCTTTATCTTCCCTATTATCTGACTTATCAAGTCAAGTATCTATCTCTTGTTGGTCACTGGCAGAGGG TTGGTGGTTGCTGGGATGGTTATTGGTTGACAGAGTCTTTGCTTCATGATAGAGATACATTTGCTGGTGGTTTGGCATAT TAG
CDS sequence (LotjaGi1g1v0387400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAGGTTTGCTGGATTTGATCCATTTGAAAGATCAACCTATTTTGGGCCATTCTTTGATCTGGGTCAGTTTGAAAG GTTCAGGCGTATTTTTCACCATTCTACTTACCGAGTCTTACTGGGTCACAAGGAAAGAAAGATTATGAGCAGTTTGTTTG TAGAGGAGAACAAATATATGCAGCGGGTTTGGATTCGTGGAAGTCGACCAGAGGAAGAGGAAATATTTCAACTTACAATG ACTCAGAGGGTTGGTGGTTGCTGGGATGGTTATTGGTTGACAGAGTCTTTGCTTCATGATAGAGATACATTTGCTGGTGG TTTGGCATATTAG
Protein sequence (LotjaGi1g1v0387400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYRFAGFDPFERSTYFGPFFDLGQFERFRRIFHHSTYRVLLGHKERKIMSSLFVEENKYMQRVWIRGSRPEEEEIFQLTM TQRVGGCWDGYWLTESLLHDRDTFAGGLAY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 110 | 110 | 1.4E-63 | – | |
| PANTHER | 1 | 110 | 110 | 1.4E-63 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0387400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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