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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0438300 |
| Transcript ID | LotjaGi1g1v0438300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase; TAIR: AT5G01220.1 sulfoquinovosyldiacylglycerol 2; Swiss-Prot: sp|Q8S4F6|SQD2_ARATH Sulfoquinovosyl transferase SQD2; TrEMBL-Plants: tr|G7L6J3|G7L6J3_MEDTR Group 1 family glycosyltransferase; Found in the gene: LotjaGi1g1v0438300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93298121..93304567) extracted from Lotus japonicus Gifu genome v1.2.
ATCAATACTTATACTGTATTTTAGTTTCTTTGACATTGCATACAGATAAGATAAAGAAGATAGGGAATAGATAGATATTA TTAACATAGAGGAGATGAAGAATCTCTACTGAATATTGTACAAGGAAGCAGGAGTTCAAGAGCCTGTTCTCTCCACTAAT TCTGGAATTCAAGAGCCAGTTCTCTCCCAACCAAATTCTAGAATTTCTGAATGTCTAAACTAACAGCCACAACTCCTATT TAATAACCAGAAATTTAATAACCACAATTCCTATTTATTTAATAACCATAAATTTAATAACCACCCCAGACAATTTTGAT AGAACATAACTAACATAAACTAATGTAACTAACCCAACAGTTTCTGATCCGCTAACTGCTCTTAACTGCCTATAGCAATT TGCGCCTCCAGTGCTTCAGCCTATCTTGGCTGTGTGGCTGTCCTATGGGGGTTTCTCCGTATCAATACCCCCCCCCCCAA GAAGAATCACCTTGTTCTCAAGGTGGGTGAACCTACCACATTGCCTGATTTTTCTTCTCAATCATCAAAACTTTTTTAAC CATGACTGACAAGGTTTGTGGTTCGTAAAGTTTGATTTCAGTACCATTGGCTTCCTTCAATCCATTCACAAAGATGTCCA TTAAATGTGCCTCACCAATGCCCTTCAACATGCCAGCAAATTTGTCAAATTGCTTCACAAATTCTTCCGCTGACCCTTCT TGTTTCAGTGCTAACAAAGCAGCAAAGGGGTTGAGAGTGTTTGAAGATAGAAACCTTTCTAGGATTGCTAGTTTAAAATT TTCCCAGCCAGTATGTGGATTGCCTGCTTCCCACCATTGGAACCAAGACAAAGCTTTGCCATCCAATGCCACCGTGACTG CTTGCAATTTCTCTTCGCCGAGAATTCTTCATATTCGGAAGAATCTCTCTAGTTTGTTGACCCAACTATAAGCATCAGAA TCCCCGTCAAAGAAATGAATCTCCAACTTTATCCATCGTTCAAAGTTGCTATCATTTGCAGTTTCCTCTTCATGCCTAGT GCGCCTGGATGGACCTTCTTCTTCACGACGCATAATAGTCTCCATCATAGCCTCTAAGCGCTGAAATCGTTGTTTGGATT GTTGACGATCAATTTGCATCATCTCCAGAATTTTCTCCATTGGATCTTCTCTTGTATCAGTTCTACTCTTGCCCATGACG GAATCGTAAAATACAACAGCACCTGGATGGTGCTCTGATACCCAAATGATCAGATAAAGAAGAATGGAATAGATAGATAT TATTAATACAGTGGACATGAAGAATCTCTACCAAATATTGGACGAGGAAGCAGGAGTTCAAGAGCCTGTTCTCTCCACTA ATTCTGGAATTCGAGAGCCAGTTCCCTCCCAACCAAATTCTATAATTTCTGAATATCTAAAGTCTAAACTAACAGCCACA ACTCCTATTTAATAACCACCCCGAGGCAGTTTTGATAGAACATAGCTAACATATAAACTGATGTAACTAACTAATAATAG CTAACCCTACAGTTTCTAACCCACTAACTGCTCTAAATAGCCTATAGCAGTTTGCGCCTCCACTGCTTGAGCCTATCCAG GCTGTGCAGCTGTCCTATGGGGGTTTCTCCCTATCACATGCTAACTACTTGTGTTTATTTGTGACTTATAGGTGATGGTT GTGACAACACATAAAGGAGTGCCCCAGGAGTTTTATGGAGCCAAATTAATCGGATCTTGGAGGTTGTTTCAAACCTGCTC TGTTTTACTTGCTAAGCTCATATCTCATTTTCTTCTCTTAGCTCTACTTGTGATTCTAAATTATTGTTTTGAAATGACAG TTATTGTCTTTTAATCACAACGAGCTTAATTCTTGCTTCTTAACTGTATACAGAGAAAAGACTAAGAGAGAGAGAGAGAG AGGGAACAGAGAGAGAGAGAGAGAGAAATATATTGTAATGGGATACACTACTAGGTGCAGCCTCCCTCATATATATAATA TTAGGTTAAGAGTAAAGTACAAGGTGTACTACAAAGTACGAATTTAAAGTACATATGGGCACGACCTATAGATTTTACGT CTAACCCTAACTCTTAATACAACCCTTATCGCTAACATTAATTGCATTCATTGTGCATACATTTCTCAACTTTTGTTCCT GTACCTCATTCTGCCAGTATATGTTGTTCCAATTATTTTTTAATTTGACTGGTACGTAATTATGGCATTCGTATTTTCAT CATTTTGATATCATTAAGAATGTGCCAAATTAGATCTTCTCTTTAAAGGCACGATTACTGCATGAAGAAATATGATGAAA TTTGTGTGTAAAATGGCGAGTGCCTGATCGAATTGATTGGGTCATGAAGGAACAAGGTTCAAGTCTACTGGTCTATTATG AATATGATACCTCAGCTGCATACATCACTGCACTTCCTCTTGGCTCCTATCATTAATGAAAAACGGCTTAGTCTTACCTT GACATTCTGTTGAATTCTCAAAACTTTCACAGCAGAGGCTTTATTATAAATAGTTAATATAATAATTACAAGAACCACAA ACATCCTAAATTCCTAATTACTGTAATTGCATGATTTAGTTAGCCTACTTTCCATCAACTATCACTACAATCCTTTATAC TAAACTTAATTTACACCAAAAACAAATTTTGAATGCAGCTTTCCTTGCCCTTTGTATCAGAAAGTACCCCTCTCCTTGGC ACTTAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTTAAGCCAGACATAATACATGCATCATCTCCAGGCATTATGGTGG GTATAGAATCTTCTATCTCTTCGTCTATTACCTATTAAGGATAATGTAAGTGTAAGAACTTACTTGTCACCTGACATATC TGATGCTTGCTTAATTTCAGGTTTTTGGTGCTCTTATCATTGCAAAACTTCTGTGTGTTCCTATTGTCATGTCGTATCAT ACTCACGTCCCCGTGTAAGTTGTACTGAGATTTCAGTTTTTCTTAATATATTTACCAGATTAGATTGTTTGGCTCTTCTG CTTACGATTATTCTGATTAGATGCTATGACGTCGGATCTGCTCTACATTACTTTTGGCTGATCTAATTTTGCCTCCAGAT ACATTCCAAGATATACATTTAGTTGGCTGGTGAAACCCATGTGGTTGATCATAAGTATGTATGCTTTCTTGGTTTTTCCA ATTTGGACTCAAATGTTTTTTAACATAATATAAACTTTTGTTTCATACAGAATTTCTTCATAGAGCAGCTGATCTGACTC TGGTGCCATCTGTTGCAATTGGGAGGGATCTTCAAGCAGCTAAAGTAACAGCAGGTGTAGATAAAAGCTCCATATCTAGT CTTTTAGTTGTGCTTAATTTATAACAGCATCCAAATAGAATATATGCATTTCTTACTGTGCCTTTGTCAATGTAGTAAAA TTTTGGCTGACTTCTATCTCCTGTTGATATCCAGCTAACAAAATCCGTCTCTGGAGCAAGGGTGTTGATTCTGAAAGTTT CCATCCTCGATACCGCTCACATGAAATGCGATTAAGACTAAGGTTTGGACCTGTTGTCATATTTCATTGGTAAAAGTTTT GATAATAATAGGATTTCACCTTATTCTTAAACACTTGTTTATCATACAGCAATGGTGAACCCGAGAAACCCTTGATAGTT CATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGGTAACTTCATACGAAAATTTCCTAACTTTTAGT CGTAATTGTACTCAAGATTTCGCAGTCAATCTTAAAATCCTTGATACAAACTGCAAATAGCACAAAAAATTGCTTGTTGG TTATTGGTGTGCTGAAACTGAAAGATTGGTAAAACCTTTCGAGATATGCTTTCAAGCAATTCACTCTAGCTTTCTTTGAT GCTTCTTACTCTACCATACAATTTATCTTGCATTAGAATTTGAATACTTGTAGCCGCCTTTGTCTTCTGAACCGCATGAT CTGGAACTGGCAGGGTCATGGATAGGCTTCCTGAAGCGCGAATTGCTTTCGTTGGAGATGGACCCTACAGGTGACGTACT CTGACATGTCTGTATTATTTCTGTTCAAGATCCAAATGCGGAAATTTAATGAGTGGATAGTCACTTCGGTTCCTGAAGAT ATATGGTTAATCATTTTCACTCCCCTATTAGGAAATGCGAAATGATTAATAGTACGAAGACGAAATGTGCGATTGTTATG TGGCATCATAATATCCTGTTTTTCTGTTTTTAACCACTATTTTGAATCCTTCTCTCTCCAAAATCTTTCTCCTGATTGGT TATTTCTCATTTCGTTAGTTTCGTTTTAAATTTTTTTCATACCATATAGCATTGCTCTTAGGAAATAGGCAAAATGGTCG CTGAAAAATAAAATAAGATTAACCTTTTTAATCTCTCAAGGTTTACATTATCATGATTTTCATCTTTCAAGGTCTTAATT GATCATTTTTCATCTTTCAGGGACTATTTTGTCAATTTTATCTTTCAAGGGCTAATTTGACTGACCCCATATCATTTAAG GGTCAAAGTGACTATTCACTCAAATTTAACTATCCCTCTCCCTGCTAAAAAAATCAGGTTCTTTCATTCCACATGTCATG GTTTTCTGTTTTGAAAATGTTGGTAGACTACCAAGAGATGTAGAGTGTTGACACCCAGAGTGAGAAAGGATGAAAAGAGA GAAGTAATGCTTGTAATATATGATGTAATGTGATAAGAAGTGAGAGATAGAGAGAAAATTGGGTGTTTGAGAGGTAAAGT AATGTTAGTGGTCTATGTATCATAATTGTTTCTGTTTATATACAATTCTCCTTCCTCTCTACATAAATAAGCATGTTAAA TACCAAAACTTCAGCAACTTATACCAATAGTATGAAGAATATGTGAGAAGAAAGAGAATAACAGAAAGCATTGGGAAAGA AAAATGTAGAAGGGAGGTAAATTAAAAGTTTCTTTTGCAAATGGCATTCTTCCAAAAGTTAAAAATTACTCTTTGAACGC ATGAGTCTTATTCCTTTTAGTAATATGATACCAGGGAGGAGCTGGAGAAAATGTTTGAAGGCATGCCTGCAGTATTCACT GGAATGTTAGGAGGGGAAGAACTCTCTCAAGCATATGCCAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACACT TGGATTTGTTGTTTTGGAGGCCATGTCTTCAGGGCTAGCCGTTGTGGCAGCGCGTGCCGGAGGCATTCCAGACATAATTC CGGCTGATCAAGAGGGCAAAACTGGTTATCTTTATCATCCTGGAGATCTCGAAGACTTCTTGAGTAAATTGAAACCCCTT TTGCTCAGCCAAGAGCTGAGACAAACTATGGGAAAAGCTGCTCGTGACGAGATGGAGAAGTTTGATTGGAAGGCAGCCAC CCGAAAAGTTCGCAATGAACAATACAATGCCGCCATTTGGTTCTGGCGCAAGAGAAGGGCTCAACTGTCAAGACCCTTAC AATGGCTGGGTAAACGTTTTTCCACATCACCCCAAGTCAATTAAATGTCTGGTTGGTTGAGTGTGATGCATTCTTTTTCT GAATAGAATGAAACATACAATATGGTGAGTTGCATCATCATGTGCAGCATACTCCTTAACGAATCTTCCTTTTAAAATTA TGGTGTTCACTGTTAAGGACAGTGTCACAAGCTACATGGTGCTGCAAAGTGCTAACGGATTGATAGCAAATGCAAAGATT GGCCCAGGTTATTGAATGCTACTTGCCCTGGGCCAAGTTACTCCAAATTAGGACAAATTGCTGTCAAATTACTTGGGGAT TTTGGGGTTTAAAGGTAAAGGTTTTTTTATTTTTTTATTTTTTTTATTACCACAATCTGAATTGAAGAGTTTGTACCAAA TCATAAACCCAGGTGGCTTAGTTTAGTCGATTTTGCCTGAAGCCACTTTGATTTTGCTCATGTAAGGGGTGTAGCTTAAT CTAAAGGCTTAATTGCAGTTTTGGTCCCTGATCTAACATGATTGTGCAAAAGTGATCCCACATGTTTAAAACGAGCGGTC AATGTCCCTAATGTTTGTACCGTGAGCAATTTAAGTCATTCCGTCCACTTCTGTTAGTTGACTAACGGAATTGCTGACGT GTGCTTCATTAATTGACATGTCATGTTGTGTCACCCTGCCACATAGATAAATAATTAAAATATTATTATGAATTCAAATT TTCCCAACCTCTTCTTCATCCCAGCAAATCATAACTGTCTTTAAATCTTCATCTTCATCTTCATCATCATCATACTCATT CATCTTGATCTTTAGAAAAAGAAAAAAACAGAAACACTAATAAATTCAAACACACCCATAATTTATGCAACTTATCCAAT ATCCACCATGAGTATCATTCATTCTCCATGGCTTTCCAATCATACAG
CDS sequence (LotjaGi1g1v0438300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTTGATCATAAAATTTCTTCATAGAGCAGCTGATCTGACTCTGGTGCCATCTGTTGCAATTGGGAGGGATCTTCA AGCAGCTAAAGTAACAGCAGCTAACAAAATCCGTCTCTGGAGCAAGGGTGTTGATTCTGAAAGTTTCCATCCTCGATACC GCTCACATGAAATGCGATTAAGACTAAGCAATGGTGAACCCGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTT GAGAAGAGTTTAGATTTTCTCAAAAGGGTCATGGATAGGCTTCCTGAAGCGCGAATTGCTTTCGTTGGAGATGGACCCTA CAGGGAGGAGCTGGAGAAAATGTTTGAAGGCATGCCTGCAGTATTCACTGGAATGTTAGGAGGGGAAGAACTCTCTCAAG CATATGCCAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACACTTGGATTTGTTGTTTTGGAGGCCATGTCTTCA GGGCTAGCCGTTGTGGCAGCGCGTGCCGGAGGCATTCCAGACATAATTCCGGCTGATCAAGAGGGCAAAACTGGTTATCT TTATCATCCTGGAGATCTCGAAGACTTCTTGAGTAAATTGAAACCCCTTTTGCTCAGCCAAGAGCTGAGACAAACTATGG GAAAAGCTGCTCGTGACGAGATGGAGAAGTTTGATTGGAAGGCAGCCACCCGAAAAGTTCGCAATGAACAATACAATGCC GCCATTTGGTTCTGGCGCAAGAGAAGGGCTCAACTGTCAAGACCCTTACAATGGCTGGGTAAACGTTTTTCCACATCACC CCAAGTCAATTAA
Protein sequence (LotjaGi1g1v0438300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWLIIKFLHRAADLTLVPSVAIGRDLQAAKVTAANKIRLWSKGVDSESFHPRYRSHEMRLRLSNGEPEKPLIVHVGRLGV EKSLDFLKRVMDRLPEARIAFVGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGFVVLEAMSS GLAVVAARAGGIPDIIPADQEGKTGYLYHPGDLEDFLSKLKPLLLSQELRQTMGKAARDEMEKFDWKAATRKVRNEQYNA AIWFWRKRRAQLSRPLQWLGKRFSTSPQVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 238 | 238 | 1.5246E-87 | – | |
| PANTHER | 1 | 270 | 270 | 4.7E-178 | – | |
| PANTHER | 1 | 270 | 270 | 4.7E-178 | – | |
| SUPERFAMILY | 2 | 234 | 233 | 1.39E-56 | – | |
| Gene3D | 4 | 227 | 224 | 4.6E-51 | – | |
| Gene3D | 45 | 226 | 182 | 4.6E-51 | – | |
| Pfam | 67 | 219 | 153 | 5.0E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0438300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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