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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0505100 |
| Transcript ID | LotjaGi1g1v0505100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT3G01150.1 polypyrimidine tract-binding protein 1; Swiss-Prot: sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1; TrEMBL-Plants: tr|K7LFQ1|K7LFQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0505100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102302194..102309948) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAAAATCATCTAATTAGTTCGTTTTTTCTTTCCTTTCACTTTTCTTTGCCAACCAAACAAAGCCTAAATGAGAGTGG TGACGTGTCACAAGATAGTAGCAAATAAATCGAAAAGGGTGTGCCGCTGGGTGCAGCTGCAGCAGAACAAATCTCCACCA CGGACTCTGATTGCATCTACTGACCGATACCAGAACAAAATCCACCACCACAATCATTCTCTCTCATATTTTCCCGGGAA AATCTCTCTACTTTTCTCGGAAACCAAACACCCTCTTCTCCCATCGGAATCTACAGTGAATAGCTATTACTATGTCAAGC TCAAGCCAACCCCAGTTCCGATACACTCAAACCCCTTCCAAGGTTCTTCACCTTCGCAACCTTCCATGGGAGTGCTCCGA AGAGGAGCTCATTGAGCTCGGTAAACCCTTCGGTAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAAG CTTTCGTTGAATTCGTAACTTCCCTGAATCCCTTTATCTCATTTCGTTCTTTCAATTAATCAATCATTGAATGAAATCAG GGTTTTTTGAATTCTCATTTAATCATGTATTTTTTCACTGAATTTGCATCAATCAGTATCTTTAAGCTGATATTACAAGG TTGTTCATTATCATGTACTTAGGGTATCGAAATTAGGTCTTTTATGGGGTACTGCTGATTTTGACTTCTATGATTATTTT CCTTTAGACTAGTTTGATCTTCAAATGATGCATCAGTTATTTTATATTTGAGCTTTTATATTTTCAAATTAAGCATGCAA CTAATATATCTTGCTCCTAGCCTTATCAATGTAATGATATAATTGTAACTGAAATATATATCGAATAAAAATAATAAGAT TTTGTGAGTGTCAATGAATGAGTTACAAACAATTAGGATAATCTGCTAATGTTTGTACAAATATAGTTTTTTACAGACAG TTAGGGTTTTGAAAGAAATTAACCAACTTGTTATTGTCGGGTTGGCAAAGTGAACAACTTTTTGGATTAACTGAAACCTG GAAATTATGAAGAAATCGCGTAGGCATAGTCACACATAAAGCAAAGGTTCTCATGGCTAAATGTGGTTTAGCCATTGCTT TAAACTAGAATGATGAGTTCATATTGCGTTTGAAGTTCAATCTGCGGCTGTTCGTGAATAGAATCTCTTTGTCTATTTAA TAATGTAATAATCAAGGAATTAAATAGATAAAAGCAATATAACATAAAGGGTAGTCAATGCCAGCCTGAGTGGAGCTTTC CCACTCCCATGCACTCATGATTGAGTGTTTTAGCTAGAGATTGCGGCCCTTCATAGACATCAGTGGTGGCCACATCAACT GTTATTATGTTTTCTGATTTAGATTTGATTAGGTGGTGGATTAGATCTTGCCTTTGAACCTCTAGATCAGAGAACCCATT AACGTCGAGCTGGGACCCAAAGTCCCATCGCCGGAATTTAATCCACGTGCGTGGCTGTTCAGTTTTTCCTTCATGATGGA TGATTTAATATATTGGGGATATTGAGCCTATCATACGATGAAAAAAGTTTGAATCTTAAACATCTTTTGTGCTAGTGGTC ACCAGTTTAGCTATTTCATTTTTCTTTCCCTTTGATTAGTATTATAAGTGGCTGCCAATTGTTTGAGGATGCATGTCCTT TTATTTGATTATACCCTGTCATTTTCTGATTTTCCAACTCAGATTTCTGAACTCTCTAATATACATGCTTTACCAGGCAG ATCTAAATCAAGCCATTTCGATGGTTTCATATTATGCTTCATCTTCAGAACCTGCTCAGGTCCGTGGTAAAAGCGTTTAT ATACAGTATTCTAATAGACACGAAATTGTGAACAATAAAAGCCCTGGAGATATTCCCGGCAATGTGTTGTTGGTCACTAT TGAAGGTGTGGAAGCTGGGGATGTGAGCATCGATGTTATCCACTTGGTAAGTACTACTGAGTTGATTTTGTTCTCCTCTG TGTGATTTTGTTGGCATCTTCCTTAGATAGAAGCATCTTGTGAATTGTGATGCTTTGTTTTTTAACATGTTTATTTTTAA ACTTGGTTTAGATCTACTTGTTTTAATGCTTATGTATGAAGACATTGTTTGACAACATGCCAAAAGAAGTCATGATCACA ATAAAACTGATGTTAATTTTGAAGTAAATGTAATGAAATTCTTAATCTATGAATCCGAGAGTGACTTTTAATAACTTTCA GAAATATCTGTCTTTCTGGATTGTGCAAGTTCTTTTGAAATGTAAAAGTATGGATTATTTTGAATGTGCTTTCATATCAC TTGACACGATTCTGACACAGACCCACACATCTTTGCTCTCACTCTCACACTGTCACGCATCATTGCTGTCTGCTCTTATT GGCACGTCTATGCTCATACCTGAAAAACTCAAAGTTATCCGTTTAGCTTCTCCCACATCTCCTCTGCCATCTTGGTGAAT GGCTCTTTTCCGGTGAATGGGTCATCTCGGACAAACTGCACATCTCTAGTGAACAACCCATGCTCTTCCTCATTTCCTTT TTTCCGTTTCCCTATTTTCTGAAGTCTCAGTATCTGCTCTGTCACTTGCTTTGTTCTCTATTCCTTTGTCTATCTCCATC TATTCCCTTCTCTGCTCTGTCCTATTCATACCTTTCTCTGTGATTCTGTCGTCTTTGTTCAGTGGTTCAAGGACTTCTAA TAACAGTACTTTTGAGGAACTTTATTTATTGCAATATGTTTCTTATTCATTTTTCTTGACTTAGGTTATTAGTCTATTAT ATTCTGCATTTATATACATTTTGTGATTGTACAATGTTCTATTATAGTAGGCATACTTTCACCACAGGCTGCAATGCCAT CCACCATACTGTTATAGCTAATTTTAGGCTTGTCTTCACTAATCACCATCTGCCTTAAGAACATTGGTGCCAGTACGTTT TCTTAGTGGATATGTGCCCAATACTAAAAATTTATTGTTAATATTTATTAAGTGAAACTTGAAACTATGTAATTTTTGTA GTTATTAAGTCCTACATTATTAATTCTTGCATATCACCTTTTTTTTTCAATAAAAAGGCCTGTTCCTCTTGCTTTAGGAT TTCACATTTCAAAATGTGAATTAATTGAAGTTTTAAATTATTTAAGATAACTTTAAATAAATAGTAAAATAAATATCAGT GAAGATATGTAATTGAATTTGGAAGTATGATATGGAGTTGAAAAGAGATTCCATTCACATTGCTTTTAGGAAAAATTTAT GTCCACCTGAATCATTCTGCGACTGTTTTAAATGAGAAAATATTTCTGACTGAACCCTGCTTTATACTTGATTTCGTCTG ATGTTTTCTTGGAAAGATTTTTAAGTCTCGAGCAAATCTTATATCCTTTTTAAATAATTTACTTTTCCCTGTTTGGAGGG GCAAGGGTTATCTCATGAGTGATTGGCGAGGAATCTGGGTTTAATACCTTTTATTCATATGCAGCTCCATCGTTTTTCAT ATAGTCTTGTGATCTTTTTATCTTTTACCCTTTTATTTAGAGTTAAACAGAATCCTGATTAAATCATATGCCATTTTTTA ACTGAAATCGGTTGAATCACAGATGGTGATCTCTCATATTTAGATACTTTGTCGGAGACAGTTTGGAATTATTATATGGT CATACAACTTTCTAAGGTCACACATATAAGTACAGGTGTTATTCTGCACTTCTTTCTTACCTGTTTGAAACTTCTCATTC CTTCATGACATTGCCTTGTCATCTCAACCTTTGTGATGGTTCCCAAACTTGTGCTTTCATATTATCTTCTGACCTTTTTG TTTAAAGAAACTCAATGCGATGTATGAACTAGTTCTTTCTTCTTAATTCAGGTGTTTTCTGCTTTTGGCTTTGTTCACAA AATTGCTACTTTCGAAAAGACTGCAGGTTTCCAGGTTAGAAAATTATCATCAATTGCACTTTATTCAACATGTCCTTGAC TCACTGTAAGTATTAACTTTGTTTTATGTCATGGCAGGCTCTGATTCAGTACACTGATGCTGATACTGCTTTTCAAGCTA GGGACGCATTGGATGGAAGAAGCATACCAAGGCAAAATTATTTTTGTATTTGCCCCTAACTTCCTCAACCCCATCTTTAA TTCTGCTCATAGCTTGACAAGCCATAAATTTGCTGATTCACTTATGCTTTTGTATTCAGATACCTGCTTCCAGATCATGT TGGTTCTTGTAATTTGCGTATTTCATACTCAGCACATAGAGATCTGAATATCAAATTTCAATCAAATCGCAGCAGGTAAT GGTGGAAAGCAAGCGAGACAACCATCATATATTATTCTTCAGTTGTATTTATTGGTGGTTTATTTTCTAAGATACTTACG CAAATTTTAAAAGTTCTTGTATGTAATGTTTTGTGGTGTTATCTTATCCATTGATTGATATATGTGCTTTTATCATCTAG GGGTTACTGAAGCTTGGTAGTCAGGATACAGTTGAGTTGCCATGGCCACTTAGTAATTTTCTTGATCATTTTCCAGCTGC TTGATGTATTTTCTGTCAATATTGTTGAAATCATTTTTATGTTATTGAAATGCATTGAGCAAGATTATTTTAAATAAGTT ATATTGGGGATACAGTACTAATTATTTGTACTTGTTCAGTTGTTCTCAATCTAATCTAGTTGCCATCTCCATATTTGGAG GCGACTTTGATATTGACAATGCACAGCTGCCTCGTAATTTTGTTCTATGTACCAAATAAGAGTTGTTCAAACAGCTTCTT GTTTTGTAAATTTAGTTCTTTGGTTTTTTTTTTTTCGTGTTTGGCACGGGTCATCATCAGGTTTTACTCTCTAAAGTATC TTCTTTTATATTAAATTTTTTTATCTGATTTTTTCCCGTAATACGAGCTTCCTCACTTGAAGCCCTGTTCCCTAAATCAG GTTACAGTCTAGATGTAAGGAAGAAGAAATAAAAAATTGTGAAAATCTGTAATTGCCAATTCTTTCGTGATTTTACTTGG CTGTTTGGGGAACATTTATGTTAAGAGTACTTTGATGTTGTGGCATTGAACTCTAAGAAATTGTTAGTGAATCATAATTG TACAAAAAGCATATTTTTTGTACTAAAAATCTCTTCTATCTTTACCTTTTGAGAAGTACATGAATATAACAGGGTTGTCT GTCTATTCATTCTTGTGTTTTATCTAGCCAGTTAACTGTTTTGGTTCAATGGCTCTAGCATCTAGCAAGATCTCTGGAGA TGTATGTTTAATGTACTGATAATTCTTAAATCTTCGATTCAGGCATAACGTTTTTCTAATGTGCACGGCTAAGTTTCTAT TTTATAAATTTCATCTTTCAGACGTTAGTCTTATTAGTGATTTTTCCGTGACCTTTCAGGGACTATACAAATCCTATGCT TCCTGTTAATCTTACTGCTATTGAAGGGGCAGGACAGGTATTTTATTGTTTTTTCCTTCAATTATTTTTTGCTTTTCCTA TTTTTAGTACATGCTAATAGTTTATAATCTTCAGCCTGCTGTTGGTCCTGATGGGAAGAAGAAAGAACCTGAGAGCAATG TGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACAGTTGATGTCCTTCACACGGTGAGAATTTGTATTTTTCAG TAAAACTCCCAAAGTTGTACGTGAATTAATTTCTTACATGTTGGTCCATCTTTACAGGTGTTCTCTTCATTTGGTACTGT CCAGAAAATTGCTATTTTTGAAAAGAACGGTCAAACCCAGGCACTGATTCAATACCCTGGTATTAATCCTATTGGACTGT TAGTTCTCGTTCTAGTGCACTGGGTCCCTTATTGTGTAATTTATATAGTTTATATGCCTATTATCTTCGTTGTATAGGTA TTTTGTGTAATTTGATTTGGAGGTTCCTGATATGCTTAATGCTGGAGATTGTAATGCTTATGCACCAGTGTTTGGACTGA ATGGTTGGTAGCTAGGAACAGATTGCTGTCTTTCAGTGATTTTGACCATTTCACACAAATTCTATTACATATTTCATTCT TTCTTATTATTGATCATTTCATTAACCACATGCTTCTGCTCCAATGCTGAATGGATGGTGTTTTACGCTAATAGATAGAG ATTAATTACCGTGCTTTTCTATGATTTTGAGATAAACTGGATCTTATTCTGAGGACTAGATGGTATTTTTAGAGGAACTA TCATCAATCATTAATGATATGAAAAAGAAGCTGGTCATTTTTTTTTTGTAGTTTTTAGCACCTCTATCTACTTGTATTAT CTTATTTATGTTAGTTGAGGAGAATTTCTTATACTCTTATGTGGCCTTCTTATTTCCAACTAATAATACATGATTGTTTC ATAATTTTTATTTACTCTAGACATCATGTAGAGTAGGGTTCATTTCATGTGGCATACTCAAACACAAGTTGCAGGGGAGG GAACTGGGTACCAGATTGGTTAGCCTTCCAGTTCCCTTTTTTGGACAAAGCATGTTTTTGTTTTTGATCATGTGTACACA TTTTTTCGCAGATGTCATAACAGCAGCTGCTGCTAGAGAAGCTTTAGAGGGACATTGCATATATGATGGTGGCTATTGTA AGCTTCATCTAACATATTCTCGTCATACTGATCTCAATGTGAAGGTATATAAACGTGTTTTTGAGTTAATGTTCATGAGG GGAAAAATGAAAGGGGGTGGGGGGGGGGGGGGGGTGGGGAATTTAAGATATCCTTAGAAGCAATGTGGACACTTTCTTAA TCGGAGAGAGATTTATTCTTAAATGTATGCTTCTTGACACTTGATTGACCTTCTATAGTAATTTGTTTAAGATAAGTGAG TGATTATCCGAATATGATTTTAATACTATATGTTTTGGTTTTAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTGCCA GATCCTAGTGTGCTTTCATCACAAGTTCCTGCCACAGCCTGGCAAAATCCTCAGGCTGCACCTATGTACCCTGGCAGCGG CCCGGCTTATCAGACTCAAGTTCCTGGAGGACAAATGCCATCATGGGATCCAACCCAGCAGTCATTTAGACCTAGTTATG GATCTGGAGGCGGTGCTTATCCTGTTCAAACTGGTGCAGTTCCTTCAATGCCTGCATATCCGCCGGCAGGCGCTGCCGCC TCCTCACAGCCTGGGGCTCAGCCAAATGTGAGACCTGGTGGTGCGTCACATCCAGGTCCACATTATTATGGTTAGGAAGT CATAGCCTTACTTCTCTCTCAATGAAAAGAGAACGGTTTTGATGGATGAACGAGCCATGATATTAACAAGTTGTTATTTG GATGAAAAATTGTTCATTATTTTTGTTGTCATCTTAATTTTATCTTGCAAACAAAGCTTAGCAATCGTATGATATACTCT CTACATCGTGTTTCTTTTCTATTTTTTTGTCCATTTTGAAGTTCTTGTACTTTTCATGGAATATTCACATAGGTAAAACG GAGGGGTTAAACATCTTTCTCTATTTGACTAATCCAAATATTTCAAACTTAACTGAGTCAATTACCCACAGTAGCTACAT AGTTACCATGTGAAACTTTGGACATTGCTGTTTCAACTTACGTGTCATCGCATCGAAGTTGAAGCCATCAGATCTCTAGA TGAGTAGATGATAGCTATCTCTGTATTGGTTGAATAACCAATCAGAAGGGTTTTGGTACTAAACCAATCTTCCAG
CDS sequence (LotjaGi1g1v0505100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTGTTAATCTTACTGCTATTGAAGGGGCAGGACAGCCTGCTGTTGGTCCTGATGGGAAGAAGAAAGAACCTGA GAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACAGTTGATGTCCTTCACACGGTGTTCTCTTCAT TTGGTACTGTCCAGAAAATTGCTATTTTTGAAAAGAACGGTCAAACCCAGGCACTGATTCAATACCCTGATGTCATAACA GCAGCTGCTGCTAGAGAAGCTTTAGAGGGACATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATATTCTCG TCATACTGATCTCAATGTGAAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTGCCAGATCCTAGTGTGCTTTCATCAC AAGTTCCTGCCACAGCCTGGCAAAATCCTCAGGCTGCACCTATGTACCCTGGCAGCGGCCCGGCTTATCAGACTCAAGTT CCTGGAGGACAAATGCCATCATGGGATCCAACCCAGCAGTCATTTAGACCTAGTTATGGATCTGGAGGCGGTGCTTATCC TGTTCAAACTGGTGCAGTTCCTTCAATGCCTGCATATCCGCCGGCAGGCGCTGCCGCCTCCTCACAGCCTGGGGCTCAGC CAAATGTGAGACCTGGTGGTGCGTCACATCCAGGTCCACATTATTATGGTTAG
Protein sequence (LotjaGi1g1v0505100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPVNLTAIEGAGQPAVGPDGKKKEPESNVLLASIENMQYAVTVDVLHTVFSSFGTVQKIAIFEKNGQTQALIQYPDVIT AAAAREALEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVPDPSVLSSQVPATAWQNPQAAPMYPGSGPAYQTQV PGGQMPSWDPTQQSFRPSYGSGGGAYPVQTGAVPSMPAYPPAGAAASSQPGAQPNVRPGGASHPGPHYYG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 214 | 213 | 5.3E-82 | – | |
| PANTHER | 2 | 214 | 213 | 5.3E-82 | – | |
| Gene3D | 25 | 129 | 105 | 1.5E-30 | ||
| CDD | 28 | 124 | 97 | 1.72319E-68 | ||
| Pfam | 28 | 106 | 79 | 1.2E-8 | ||
| ProSiteProfiles | 28 | 108 | 81 | 8.603 | ||
| SUPERFAMILY | 34 | 128 | 95 | 3.53E-16 | ||
| MobiDBLite | 158 | 183 | 26 | - | – | |
| MobiDBLite | 158 | 179 | 22 | - | – | |
| MobiDBLite | 195 | 230 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0505100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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