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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0561800 |
Transcript ID | LotjaGi1g1v0561800.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosducin-like protein 3; TAIR: AT5G14240.1 Thioredoxin superfamily protein; Swiss-Prot: sp|Q8MR62|VIAF1_DROME Viral IAP-associated factor homolog; TrEMBL-Plants: tr|I3SKX0|I3SKX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0561800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109400813..109402877) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGACTATCACTTTGTGTACAAGGATTTAGAAGGAGCCTCCACTCAATGGGATGACATTCAGAGAAAGCTTGGCAA TCTGCCTCCAAAGCCACCTGCTTTCAAGCCACCACCTTTCAACCCTGCCGCCGATCCTGACACCCTCCCCAAAGACAAAG ATTGGCTTGATTCGAAAACCCAAGATGAACTTGAAGACCTCGAAGATGACCTTGATGATGATCGTTTCCTTCAAGAATAC AGGTTATCATGCTCTCTCGCTCTCAAATAATGCTCTTTTTTCCTTCAATGAATTATGGGGTCTGTCATGAAATTGAAAGC AAAAATTCCTTTTCTGGGCTTGTTTTTGTTTGACCTGGAGATGATAGAAAATGAATGAAGATAATTTTTGTTTCCAACTT CTTTTTTTTCTGAGGGTTTTTTCTTTATTCTGAGTAACTCATGGTTGTCTTAGATTATATACTTGTTCATTTTCTTTGTT CCTGAATAGTATTTGATTGGAAATTATAGTGAATTTAGTATTTTAGGAAATGAATGAGGTTTTTGATAAATTTAAGATTT GACAGCGAATTAATGTTTAACATTATATTTACCCTATTGTTCTGTGGATTTTGTGACTAGTTCAGTCTTAGTTGGCTTAA CGGGTTTGAGAAGGGAGTAATGAGTTATGTGATTAGGATAGAGTAAGCAAAATCAAGTGCATTTGGTTTTTTAAATTCTA CATGTTCTCATTTGAGTCATTTTTCTGTTGTAGGAAGAAGAGGCTAGCTGAGATACAGGAGACAGCTAAAGTTTTGAGGT TTGGATCAGTGACCCCCATTTCAGGATCTGATTTCATTCGAGAGGTTTCACAGGCTCCATCTGATGTTTGGGTGGTTGTC ATCCTTTACAAAGAAGGGTATGTTTTAGCTACAATTGCTTTGTCATCCCACTTTTATTTAAATATTTTATTGTTTGTGTT TCCTGTGCTTAAGTCTGTTGTTGTGCTTCTGCTTGACAGGATTCCTGAATGTGTTCTGTTGATGCAAAGCATTGAGGAAC TGGCTGCAAGATATCCTGCAACAAAATTTGTCAAGATAATATCCACTGATTGCATTCCGAACTACCCAGATCGCAATCTT CCCACTTTATTGGTTTACAATAATGGAGCCGTGAAAGGAAATTATGTCGGTTTGCATAGTTTTGGGCGAAGATGCACTCC TGAAGGTATTATGTCTTAGCGTATGCTAATTATGTTATGCTTACAATCTTCTTAGCTTCTTTGTTCATGCTGGAGAAAGG CTGAGGCCTCAATTCCTCAAAATTATAATTTATTTTGACATTTCCTTCATAGAATCATGGCCTAGCTTTCTGACAAGTTT CTAACCAGAAGTGATGCTTTTTATGATGATGATAGACCTTAGTTAATTAAAGTAGCTTAGTTAATTTAAGGAGTTTATTA GAGAGTTAGAGGGTAAATGTTATAAATAATAGAGAGACACTTCTTCTTGGTCATCAGTGTTGTAATTAGGAAATTGGGAA GAGTTCTGAGTTTATCAGGAAAATGTTATTTTTTACCTTTGCATAAGTTTGGAATTGGACAATCTATTATGCTTGGAAAA TATATACGTCTCCCTAAATTATGTCTTAAAATATTTTATTGCTTGAATAATAATAACAACAACAATAATATCAGTATTAT CATTATTGCCAGTTAAATTATGTTCTTGGCTTTATCTTTATGCATTTATGAATTATAATACATATTGCTTGGAAACATAT AGTTTGAGGCAATCATAGTCATCATGACCCATATTTTCCTCCTGTAACCAAAAAAATAGTCATCATGACCCTTGCAAATC TTCTTACCTTTTTAGTTTCTAATACTTTTACAAATCGAATGTTTTGCATGTTCTGAAATACCAGGTGTTGCATTAGTACT TTGCCAATCAGATCCTGTACTTAATGATGGGCAGAGTGGAAATGAGCAATCAAGAGAAGCTGTCATTGAAGGAGTTCGCA AGAGGTTTATAGAGAAGGTTGTCCTAGATCATGAAGAGCAAGAGGATGATTCCACAAGCGATTAG
CDS sequence (LotjaGi1g1v0561800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACTATCACTTTGTGTACAAGGATTTAGAAGGAGCCTCCACTCAATGGGATGACATTCAGAGAAAGCTTGGCAA TCTGCCTCCAAAGCCACCTGCTTTCAAGCCACCACCTTTCAACCCTGCCGCCGATCCTGACACCCTCCCCAAAGACAAAG ATTGGCTTGATTCGAAAACCCAAGATGAACTTGAAGACCTCGAAGATGACCTTGATGATGATCGTTTCCTTCAAGAATAC AGGAAGAAGAGGCTAGCTGAGATACAGGAGACAGCTAAAGTTTTGAGGTTTGGATCAGTGACCCCCATTTCAGGATCTGA TTTCATTCGAGAGGTTTCACAGGCTCCATCTGATGTTTGGGTGGTTGTCATCCTTTACAAAGAAGGGATTCCTGAATGTG TTCTGTTGATGCAAAGCATTGAGGAACTGGCTGCAAGATATCCTGCAACAAAATTTGTCAAGATAATATCCACTGATTGC ATTCCGAACTACCCAGATCGCAATCTTCCCACTTTATTGGTTTACAATAATGGAGCCGTGAAAGGAAATTATGTCGGTTT GCATAGTTTTGGGCGAAGATGCACTCCTGAAGGTGTTGCATTAGTACTTTGCCAATCAGATCCTGTACTTAATGATGGGC AGAGTGGAAATGAGCAATCAAGAGAAGCTGTCATTGAAGGAGTTCGCAAGAGGTTTATAGAGAAGGTTGTCCTAGATCAT GAAGAGCAAGAGGATGATTCCACAAGCGATTAG
Protein sequence (LotjaGi1g1v0561800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADYHFVYKDLEGASTQWDDIQRKLGNLPPKPPAFKPPPFNPAADPDTLPKDKDWLDSKTQDELEDLEDDLDDDRFLQEY RKKRLAEIQETAKVLRFGSVTPISGSDFIREVSQAPSDVWVVVILYKEGIPECVLLMQSIEELAARYPATKFVKIISTDC IPNYPDRNLPTLLVYNNGAVKGNYVGLHSFGRRCTPEGVALVLCQSDPVLNDGQSGNEQSREAVIEGVRKRFIEKVVLDH EEQEDDSTSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 249 | 249 | 1.3E-111 | – | |
PANTHER | 1 | 249 | 249 | 1.3E-111 | – | |
CDD | 16 | 206 | 191 | 8.71647E-73 | – | |
SUPERFAMILY | 16 | 205 | 190 | 3.41E-44 | ||
MobiDBLite | 23 | 60 | 38 | - | – | |
MobiDBLite | 30 | 45 | 16 | - | – | |
Pfam | 60 | 186 | 127 | 3.0E-17 | ||
Gene3D | 90 | 221 | 132 | 9.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0561800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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