Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0649700.2

Overview

Field Value
Gene ID LotjaGi1g1v0649700
Transcript ID LotjaGi1g1v0649700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Protein CyaY; TAIR: AT4G03240.1 frataxin-like protein; Swiss-Prot: sp|Q9ZR07|FRDA_ARATH Frataxin, mitochondrial; TrEMBL-Plants: tr|A0A151TAC9|A0A151TAC9_CAJCA Frataxin isogeny; Found in the gene: LotjaGi1g1v0649700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:120833970..120839132) extracted from Lotus japonicus Gifu genome v1.2.

CACAGGTGCGAGGACAACTACTACTACTGCTACATCCCTAGCTGCATTGTGCATCACTCTATGTTTACGAGGGAAAGGTA AACCTCTGTTTTTCTCGGAGGTGATAGCGCACGCACGCTACGGGCGGACCCACTCACAGGCTAGGTGTGGCTTGGTTTTT TTTTTTTAAAAATTTATATGGTTGAAAAAAAAAAGAAAAACCCTTTCTGTTTTCTCTCACGCACCACGCTCCCTCTCTGT TTTCTCTCACGAGTCACGACTCCCGCACCACTCTCCCTCTCGGCCTCTCTCTGCTCTCTCTGCTCTCTGAAGGTAATGTT TTCTGCCTTTCTCACTTCCCTGAATTTTCTTTGTATTGGGTATTTGGGTTTTCTGAATTCTGATTCTGAAAAAGGGTTTG GGACTTTGGGTTCTTGTTCTAGGGTTTGAGGAAATTGAAATTGACAGTGTGAGTGTCCTCCGTACAATTGTATTTCACTT CTGTTCAGCAAGTTGCGTTTCCTCTATTGAAGTAACTTGACTAGTTAAGTTGACTCAGAGGCTATGTTGGACATCTAATG ATAGCTGTAATGAAATAAAATAAGATGAAATGGAATGTAACATAATAAGGCTATGTTGGCCTGTTATTGCTGTTTATGCT GTTGTTGTCTTGCTGGTTGAAAGAAAATTAGGATGATGCTGTCTTGCTGTTTTGTTGCTGTTGCTGTCTTGCTGTTGGAA AATTATGTTGTTGCTGTCTTTACTGTCTTGCTGTTGTTGCTGTCTTTACTGGCTTGCTGTTTTCACTGTTTTATTTCTTT TGTTATATATCGTTGTAAGCCTAGTCCTTCTTGGATTATAATGTAAACTCTTCTATTTCCATGAGAAACTTTCTCTCATG GTTTTATCTATAATATTTCTCTTTTTCAAAAAAATAAATATTTTCAATATATTTTAGTCTATAATTGCTTTTATGTTTAG CCTCACTGATATTTGTGGTCTGGATCCGCCCATGAGTCGCTACTACTCGGTTTTTCTACTCAGTCGGCAACAAGAAGCAA CCGAACAGGTTCTCTCCTTCTCGCATATAAATTCCTGGGTTCTTGTAATCCTTAATTTTCTGATTTCTTATCAATTTCTG TTTGCTAATTGCTCTAAGTGTTGAGCATGATCACACACACGCATAATTTCATGCGAACATGACTCAGTTGCTAATTTTCA CTGCTTCAGAATTGTGCCCACAAGGTGTTTGCTAAATTGCCACTTTGACACAGGAACATTCACTGCTGAGGTGACCAAAG CTATGGCTGCCAAGCTGCTTTTGCAGAGAAGGCTCCTCAGGTTCTTGACACTGTCACCACCCTCATTACACTCCTCTTCT TCTGGTTACATTAATGGGGCACGGTTGCTTTCTCTGAAAGTATCAGAAATAGTGGGTCTCTTCAAGGGTAATGCACTTCT TTCTCCTTTTTCAACTTCTTCTAGAAGCTTCTGCTCTCGGGGTTCCAATCTTCTGGATGAGTCTGAAGTCCCCACGGCCG TTGATTACCGGTATGACATACCCTTTTGTGCTTTCTGTTCATGTGTTCTTATTTGATTCATGGATACAATACAAAATTTG AACTTTTAACTGTTTTGGCTGTTTTTTTGAAGGAAAAAACATATCCTTTGTTAGCTTTTAAATTTCAGTTTTGGTTTTTT CTTTTAAAAAATCAATTGTTGAAATTCAAAGCATTTTCTAGAGAGGGTCTGACATTGGGGTTTGTGAGTGTTGGAAGAGC ATCCAAATGTCAGTCACCCTTGCTAATGCCTCAGTCCATCGAAATGGTTGCTGTATTTTTATTTTTGGATTTTTCAATGG CTAGAAATGAATTTGCCAATGGTGAATGCGAATGCAGGTCTCTAATGGAGGAGAGTGAATACCACAGCCTGGCTGAGTCC ACAATACATAACCTACAGGAAAAATTAGAGGTATCTCTAGCGTTGATTCATGTTTTGCACTGACTTAAATTTGTATTGTA CATAAAACCTGGTTCCTTCCTGACATCCGTTGTAAATTTTGCCCTTCATTTTGCAACCTCACATTGTTTGGTAAATATGC ATAAGTGATAAATTATGCTTAAATCAAATTTATTTTACTGGAAAACACAGTCTTATGTTATTCAAAGTTTAACCTGTATC AGTTGTTATTTTGTTTTGGTTGTTGCTTGGCAGGACTATGGAGACTCTATTGACATAGATGGATTTGACATAGACTATGG GGTGAGAATTCTTTTTTTGTGAGAATTTTATGAAGGGTTGATAACCACAATTACTTGTTAAATAAAAAGTATCCTACAAC TTATGTATTCAGAAGACACATGAAGTTTTCTTGTCACATTTATAACTTAATAAGCTTTTTTTTTATGAAACTCTAGTTAT TTGGTCTTTAAAAAATAACTACATTTTATTTCTTTTAATATTTTAATTAATTTCTTCCTATTAGTTTTAAGAAGTGTCTT CCCTGTCTGGGAGGTCCGTTTATTAATTGTTTTAACATGGCTGTCCCTTTTCAGAATGATGTTTTGACTGTAAAACTTGG CGATCTGGGCACTTATGTATTGAACAAACAAACACCAAATAGACAGATTTGGCTGTCATCTCCAGTGAGGTATTAGATTA AGTGTGTTTGTGGATCATTTGCTTATCTATGGCTTACTCCTTAGCTAGGAATTATTTTATTTTATTTTTAATCTCTGGCC ATCATTATTCAAATATTACATTTCTTGTCAATACTTTATACAAAACTATTTTAGAAATTATATTTCTTGGATATCTTTAT GTATGAGAATGAACTGGAGAAAATTCAATAGTTGGAGATAACAAACAACCAAATTGGTGTTAAAAGCAATATCTTTTTTA GAACATAAAAAGATATCTTATAATATCTAGATCATAGAGTAATTTAAGGCAATTTAGATTATTTTTTAGGATTAGTTTAT TTATTTCATATTTATATTATTTATTTTCTTTAATCAGGATTAAGATTCTTAATTAGCTCCCCTATTTGACTTTAAAAGTC TACTATTAGTATAAATAAGGGTTAGTGCTTTGTTTTTGTGAGACATAATATATTATATCAATACAATTTTGTTCTATGTA TTTCTTTTTTCCTCTTTCTATACTTTAAAGACTAAACCCTTAGTTAAATTTTATCATTATTTTTAATAAATATTATCTTT AGTATTAATACTTAAGTGATGCATTTATTTAGGCAACTCTCTATTTGAAACCATTTGCATATGGACCTGTCTTGTCTTAT TGGTGAAGGAGAAAGAAGTAAGGGTTAAGGAATTTGACAGTGTTAGTAGTTTAATAGTTAGTTGAGGTAGTTTTGGTTAG TTTGAGTTAGTTAGAAAGTCAGAGAAAATGTTATAAATAAGACTGAGTTAGAGAGATATATTGTCTTTTGGGATCATTGT AATTGGGCATTGGGAGACGTTTGCATTGTAGTGTTCGCTCGGAATTAGTCAAAGGGGTTATTGCCCCAGCCCACGTGGGT GTAAGGACTGTGGAGCGTGGTGGGATGTTAGGATCCAATTGCAAGGGTGTGGGGTTTATAAGGCCTTCAGCTCTCCAACT ACACTGGCTAGTTTTTGTGGTATGGTTCACCCAAGGTTCTTTTCAACAAATCTCCGGGACTGCAATTGCAAATCACCATC CCTACTACAAATCTACCCTCCCTTGCATTTTCATGCACACTATCAATTGCTATCAGCCCACAGCACCAGAACACTTCTTT AATACCAATTTGATAGACACAAGCACTAAAGAAGAAAGAAAGAACTGTTTATTGAAGAAAATTAATAAAACTCCTGGATA TTCGAGAGATCCAGGTCTCTCGCAATGGCTAATTACAATTGAAGAAAATTAATAAAACTCCTGGATATTCGAGAGATCCA GGTCTCTCGCAATGGCTAATTACAATGATCCCAAAAGGTAATATTTCTCTCTAATTCTCACTTATTTATAACATTTTCTC ATACTCTCTAACTAACTCTCTCAAACTAACCAAAAGTGCCTCAATTAACTAACTAAATCACTGACTATGAGTATCAATAT CAGAATTTCAATAAAATTGGTCTTTGGTTTGATTTCATTGTTTAAATTGCTATGTTCATAGTGCGGGGAACTGGGGGTAT ATATGCCAGGGTTCATTTTAATATTTTTCTTCCTTTAGGTAGAAAGTACTCACAATCCCTTATGAAAACTGAATTGAGAT CATGGAGGAGTATCATTATTGATACGATACAGTTCTATTAAGATATAGGTTTAGTTATTTGTAATTGGATGTAGAGATCC TGCTATTTTATGTAGCAAATGACATGGTGTCATACAACATTGTATCTCCCCTCTCTGCTATTTTTATCATCACCCCAATA AAGAAGTAGAACACAGACTGTCTCAAGTGACATTTTGATTGCAATGTCAATTGTCTGTTTATTTTGGAGGCCTTTATGTG ATTCCAAGGCTTTAAGTGTAGTTCTATTATTGAAGTGGAATGCAATTTGATCCAAATATTTTACTGGAAAAATGATCTGC TATTTCTTCTGCTGTCTTCTTAATCTGTTTTGCTTAAACTATATGGCATTTGATGTCAAACATAGGCCGAAATAGGTACA ATAATCAATTATTCGATATGACTTGTATAATCATATTATCTACTTCTCTTTACATATTCTTCTATCTCTTGGAGCTGTCT AAAAAACTCCATCTCTTTTGCAGTGGTCCATCAAGGTTTGATTGGGATCAGGATACTAAAGCTTGGATTTACAGGCGGAA GAAAGTAAACCTGTATAAGCTTTTAGAAGCCGAGTTGGAGCAGTTGTGTGGCAAACCTTTTGTTCTTTCCTGAGGTATTG AGGTGCCACCTACTCATGCTTTTTGATTAAGAAGGCAAATCATTTATGATGAGCGTTTTGCGTTCCGAAATTATTTTCTC TTTCATCCCTTAGCCACCTTTTACTTATATCAGTTTATGTATCAGCTGTTATCATATCTTTTACAGACATAAAGTGATTG TATCTTCTAAGTTCTAAATAATAACTTCTACAAAGAATTCTTGTGCAAATATGTTATTGTCATTTTACTTGTTTGAAGGA TTACAATTGCGACAGGCACTCTAGTAAGTTAGTAATTGCATTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0649700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCCAAGCTGCTTTTGCAGAGAAGGCTCCTCAGGTTCTTGACACTGTCACCACCCTCATTACACTCCTCTTCTTC TGGTTACATTAATGGGGCACGGTTGCTTTCTCTGAAAGTATCAGAAATAGTGGGTCTCTTCAAGGGTAATGCACTTCTTT CTCCTTTTTCAACTTCTTCTAGAAGCTTCTGCTCTCGGGGTTCCAATCTTCTGGATGAGTCTGAAGTCCCCACGGCCGTT GATTACCGGTCTCTAATGGAGGAGAGTGAATACCACAGCCTGGCTGAGTCCACAATACATAACCTACAGGAAAAATTAGA GGACTATGGAGACTCTATTGACATAGATGGATTTGACATAGACTATGGGAATGATGTTTTGACTGTAAAACTTGGCGATC TGGGCACTTATGTATTGAACAAACAAACACCAAATAGACAGATTTGGCTGTCATCTCCAGTGAGTGGTCCATCAAGGTTT GATTGGGATCAGGATACTAAAGCTTGGATTTACAGGCGGAAGAAAGTAAACCTGTATAAGCTTTTAGAAGCCGAGTTGGA GCAGTTGTGTGGCAAACCTTTTGTTCTTTCCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0649700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAKLLLQRRLLRFLTLSPPSLHSSSSGYINGARLLSLKVSEIVGLFKGNALLSPFSTSSRSFCSRGSNLLDESEVPTAV DYRSLMEESEYHSLAESTIHNLQEKLEDYGDSIDIDGFDIDYGNDVLTVKLGDLGTYVLNKQTPNRQIWLSSPVSGPSRF DWDQDTKAWIYRRKKVNLYKLLEAELEQLCGKPFVLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 12 12 - –
PANTHER
PTHR16821
55 196 142 6.1E-66
IPR002908
PANTHER
PTHR16821:SF2
55 196 142 6.1E-66 –
SUPERFAMILY
SSF55387
77 193 117 5.41E-38
IPR036524
Gene3D
G3DSA:3.30.920.10
78 197 120 5.5E-41
IPR036524
SMART
SM01219
86 197 112 1.2E-48
IPR002908
PRINTS
PR00904
86 104 19 5.2E-11
IPR002908
Pfam
PF01491
86 193 108 1.4E-36
IPR002908
ProSiteProfiles
PS50810
86 194 109 28.889
IPR002908
CDD
cd00503
86 193 108 1.34583E-40 –
TIGRFAM
TIGR03421
88 195 108 5.2E-25
IPR002908
TIGRFAM
TIGR03422
90 187 98 6.1E-36
IPR017789
PRINTS
PR00904
124 139 16 5.2E-11
IPR002908
ProSitePatterns
PS01344
138 152 15 -
IPR020895
PRINTS
PR00904
139 154 16 5.2E-11
IPR002908

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004322
Molecular function Ferroxidase activity Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.
Subterm of
GO:0005739
Cellular component Mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
Subterm of
GO:0008199
Molecular function Ferric iron binding Interacting selectively and non-covalently with ferric iron, Fe(III).
Subterm of
GO:0016226
Biological process Iron-sulfur cluster assembly The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0649700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…