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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0744100 |
| Transcript ID | LotjaGi1g1v0744100.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT4G03110.1 RNA-binding protein-defense related 1; Swiss-Prot: sp|Q8LFS6|BRN1L_ARATH RNA-binding protein BRN1; TrEMBL-Plants: tr|A0A072U4V5|A0A072U4V5_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi1g1v0744100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131761580..131766139) extracted from Lotus japonicus Gifu genome v1.2.
AGCACCGGCGGTGGCGGTGGCGAGGAAGAGGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACGGAAGA TGAACTGCTCACAATGTTCAAGGAGTTCGCCTTGGTCGATGAAGTCAACATCATCAAGGATAAAGCCACACGCGCTTCTC GAGGTCAATTTCATTTCTCCTCTCGCATTCTCCGCTCTCTCTTCAAATCTCAAATCTCTTCTTCTTCTTCTTCTTCTTCT TCTTCAATTCAACCCTAATTTCCCGCTCCACTTGCAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGCTGATAA GGCAGTCAATGCGTGTCACAACAAGAAAACGCTACCCGGGGTGAGTCATTCGTCATTCGTCATCTTCTCATCCCTATTTT TGTGCAATGTTGTGATTCTGTTGGGTATTAATGGCTGCTGCTGTTGCTACTTTAATAGTCATTGATTGATGCTGACGAGT ACTGCTTTTTAGTAGTGAGTGAGTGAGTGTGTCTTAATTTGGCAATGGCGTTTGTCTAATTTTAGCAATTTATGTAGCGG TACCTACTATTTTTGGGTAACCGCTTCAATTCACTCTTTCGGCTTTCATGATTGGTATTAATTTGGTGTGTTTTCTTTTC AAGTTTTCATATTGGTCAATGGAAGCCCCTGGGTCAAGTTTCTGATTTTGATGCCAATGAATGAGTCATTACTATCTTAG TTACATTTTAGTTAGTCTGAGCCTCACATGCATAGGCAGCTGAGCACTAGCAGGTGCAGATGCAGAAATGAAAACCAATT CCTGCAGAAGGTTATTATAATGTATTGATGCAGCAGCATTACATATTGTTTGGTGCTTTGGTTGGAGGGGAATGGAGGAG AGGGGAGGGGAAAAGAGGGATTTTTTTTATACTGAGTTTTGTTCAGATTTTAGGAGGGAAGGAGAATGGAGGGAGGCAAA AACCCCTCATAACTCATTTTTTTTGTCTCCCCTACAAAAGTGGAGGATTTTTAGGGAAAATCATTGGATGACAAAAATGC CCTTCCTCGTGTTTGGAAACTCAAAATTATATTTTAAAATCAAGGGCAATGGAAGTAAATTTGTTTTAAAAACTTGAACC AAACAAGAAAGAGGTTGTTTCCCCACCCTTTCCCACCCTTCCCGTCCTCTTAATCAAATGTGATAAGAATTAAAACCCCT CTCCCCCTCTTAAAAGTTATGGAATTTATGTTTCTTATTGTGTAGTCCAATAGAAATCATTTTGACAGTGGATTATTCTT CTTTCAGAAGATGTTTCTTTTCTATTAACTTTTTGGGATTTTCTGACATAAGAATTATATGATTTGGCTCCTATAAAGTG CGGGGGCTCACTTTATCACTTTAGAAAATAAAGTGTAAGGATAACCATTAATTGAAAAATCATCAGTTGAACTTGTGATA CAACATATTTGCATCCATGACAAATGAAGTTACTTAAATCTCAACAGTTGATTTTCTGACAGACAGTTTTACTTTAGCAT TTTATCTTCTCAAGTGTAGTTGCTCACTTTAGGAGCTAAATCCAAATTCATATTAACATACATATACCCTTCTAGGTCAT GCTTCACTATAAGGAGGTCACTAATATTCAAATTTGGGCTTCTTACTGCATGATGAGTTGTGTTTGTTTGACTATTCCAG ATGGTTATGAACTAAATATGTTAATATGATTGAAAAAAGTTGGTTTCTTAATTACCCAAAACTTTCCATGGAGCAATGAA GTAATGATCTAATGGATGTTAATCTTGCTTCAATAACCCTGTGTGATACGTTTATTTTCATTCTGATTGGGAAGCATCCT GTGTTTTCATCTGACTCAGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGGTGTGATAT TTTTATTATTTAATTAAAAAAATTGTTCGGTAGATCAACTTCTTAAGTTCACTTTTGCTGAAATTCCTTTGTTATTCACT TATGTTTGAATCAGAACACAAGCTCTTCATTGGCATGCTTCCAAAAAATGTTTCTGAAGTTGAAGTATCCGCACTTTTCT CCAATTATGGAACTATAAAAGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTGCTCACTTTACAGCTTAA TTCATCCTTTATTCTTCTAGGGCAATATTGTTTCTTAACCACAAGGTTTTATTCACATTTCTACTATTTTCTGGTAGGTT GTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGTA AGTGTTCACTGAAACCATCACTAAATTTTTTAGTCCTACTTTTATTGTGGTAGAAGTGGAGCTAGTAGTGTAATATAATG AACGTGTTCAAAATTTTCATCTATTTCTGTATTTTATTGATGTAGTGAAGGAGACAGTTAGATTTAATGTACGTGATGGA TCTTATTGTTATCTGATTGTTAATGTTTAGCAGTTCAGTGGTACTATCTGTAGTTTTGCTGTTGCAATGTGTGCAAAGAC AGGGCTTTATGACCGAAACCATGACTAAGATGGCAGGCCAGGATTAATCATTCATACATCGCATGGACTATTTTATATAG GACATGGTTTTTGGCTTAAATGTGATAGAATGGAAAGTGCATGTTTTTAAACTTAATTACAATTTTAGTTGTAAATGGTG TTTGCAGTATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATCCTGTTGGTGAGGAATGGGTTTGGATCCTCTCCATCC ATGTTCCCTCCATCCTCTCTCCATCCAAATCTGAGCCATTGATTTTGAAATTTAAAGGCTTGGATCAATTTAAGAAGAGA GAGAAAAAATGAATTGTATTTAAAGGCTTGGATCAATTTAAGAAGAGAGAGAAAACATGAATTAATCCTCACCTTTAAAA TTTAAAATCGATGGCTCAGATTTTGGATGGAGAGGGGATGGAGAGAAGTTGGATGGAGAGGATCCAAATCCGTGAGGAAT GTAAACATTTAATTTAATCATATGTAGTTATATTATATATGAAATATGTAGATTCATGAATTAAAGCTCACGAACTTGCA AAATGGTGCCACAGTGGGGTTGCACTAGCAAATTATCCATTCACAACCAAATGGATTAGGATATACTAAAAAATTACATT TTCTGTTGGCAACTATTCTTCAAGTGATATTACTGACAAAGAATGACGTTTGATACTTCTTTCTTGTACTGCGTTTGAAT TACTTAGTCATTTTTTTTTGTTTAGTCAGTCTTGTTCTCTACACTAACGGCAATTGTGATCTGATATTTGTTTTTCTTCC GTAGGGATCTAGTGTTCCTTTAGTTGTAAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCGC AGTCCCAAGCTTCTAATGTACCTCATGCTGATTCTCAGCACCCCTCATTGTTCGGAGCCATGCCTATGGGTTATGTTCCT CCTTATAACGGATATGGTTATCAGGTTAGCTCTATTATAATACACCGTGATACTGTAATGTAGCAATTTTTTCTTTATTC ATGCAATTGTTCTTTGGCATAATCATGCAATTGTTCTTTGACATAATCATGCCATCCCATAAGAAATCATTACATCTATG TATTAATGCTGTTCTTGATGGGATTTGTCTGTGATCATCTTTTTCTCTTCATAGGCTCCTGGCAGTTATGGGCTCATGCC ATACCGGATGCCACCAATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGCGGC CCGATCTTGGTCCTAGTATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCA GGTCTACAACATCCAATGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGTTTCACC TGCTGGTGGAAATAGCAACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTTTGTTATCTA TGTCTTATACGTGCTTGGGTATAAATGGATTCATTCGCTGATGTATATTTCTATTTTTATCACCGCTCTTTCCTTACAAC AAGAAAGGTTACTAGGTGATATTCTGCTTATTACTTAATTTTGTTACTTAGGTCCACCTGGTGCCAATCTATTTATTTAT CACATACCTCAAGAATTCGGAGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCTAAAGTTTT TGTTGATAAAGCAACCGGTGTTAGTAAATGTTTTGGTAAGCCTATGACTCCATTTGTTGTTGAATTTGATGGGTTTTGTG TGGTGCTTGTGTTTAATGAGCTCTGTTTGCAGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCATTAGTA TGATGAATGGATATCAACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTAAACCTTACTGA
CDS sequence (LotjaGi1g1v0744100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGAAGATGAACTGCTCACAATGTTCAAGGAGTTCGCCTTGGTCGATGAAGTCAACATCATCAAGGATAAAGCCAC ACGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGCTGATAAGGCAGTCAATGCGTGTCACAACA AGAAAACGCTACCCGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGGTTGTGCATTT TTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGATCTAGTGT TCCTTTAGTTGTAAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCGCAGTCCCAAGCTTCTA ATGTACCTCATGCTGATTCTCAGCACCCCTCATTGTTCGGAGCCATGCCTATGGGTTATGTTCCTCCTTATAACGGATAT GGTTATCAGGCTCCTGGCAGTTATGGGCTCATGCCATACCGGATGCCACCAATGCAAAATCAACCTGGTTTCCATAATAT GATGCCTCACATGAATCACGGGAATGCATTGCGGCCCGATCTTGGTCCTAGTATGAACCCTAGAAATTATCATGTGCCCC CGGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCGTATCATGCAGGAATGATTAGTCCA AGGCCTATGAGTAGTCCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAGCAACTCTGGTACACCTTCAGGACCAAGTAA AAATTCCGGGGGTCAAGTTGAAGGTCCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTCGGAGATCAAG ATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGTAAA TGTTTTGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCATTAGTATGATGAATGGATATCAACTAGGAGG TAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTAAACCTTACTGA
Protein sequence (LotjaGi1g1v0744100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLGCAF LKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHADSQHPSLFGAMPMGYVPPYNGY GYQAPGSYGLMPYRMPPMQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAYHAGMISP RPMSSPPGSVSPAGGNSNSGTPSGPSKNSGGQVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSK CFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 100 | 100 | 1.43E-17 | ||
| Gene3D | 1 | 73 | 73 | 2.4E-17 | ||
| Pfam | 1 | 56 | 56 | 5.1E-11 | ||
| SMART | 1 | 67 | 67 | 5.3E-4 | ||
| ProSiteProfiles | 1 | 71 | 71 | 11.537 | ||
| PANTHER | 1 | 76 | 76 | 2.6E-174 | – | |
| CDD | 1 | 67 | 67 | 1.39729E-29 | – | |
| PANTHER | 1 | 76 | 76 | 2.6E-174 | – | |
| Gene3D | 74 | 125 | 52 | 4.0E-8 | ||
| SUPERFAMILY | 76 | 359 | 284 | 1.73E-30 | ||
| PANTHER | 77 | 359 | 283 | 2.6E-174 | – | |
| PANTHER | 77 | 359 | 283 | 2.6E-174 | – | |
| MobiDBLite | 118 | 141 | 24 | - | – | |
| MobiDBLite | 126 | 140 | 15 | - | – | |
| MobiDBLite | 236 | 278 | 43 | - | – | |
| MobiDBLite | 249 | 270 | 22 | - | – | |
| Gene3D | 251 | 356 | 106 | 1.0E-27 | ||
| ProSiteProfiles | 279 | 357 | 79 | 17.541 | ||
| SMART | 280 | 353 | 74 | 6.8E-25 | ||
| Pfam | 281 | 351 | 71 | 1.8E-18 | ||
| CDD | 281 | 353 | 73 | 2.55414E-47 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0744100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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