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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0765000 |
| Transcript ID | LotjaGi1g1v0765000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | splicing factor-like protein; TAIR: AT1G02840.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O22315|SR34_ARATH Serine/arginine-rich-splicing factor SR34; TrEMBL-Plants: tr|G7KRW9|G7KRW9_MEDTR Pre-mRNA-splicing factor SF2-like protein; Found in the gene: LotjaGi1g1v0765000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133745063..133750904) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGGAAATACCCAATCCAAAGTGAGCGTCACGTGTGACGTTCCCAACCGAACGGGAAATTATTTCCGTAACAGTGAGT GTGCGCGTGTGACTGACTATATAGCAATAGCATACACCCTTCTTCCTCTCTTTCTTTCTTTCTTTCTTTCCCTCTTCTCC TCATCAAAACCCTAATTTTCCAACGCACCGATCCCCAATCCTCACTCACCCAAAGGTAGCTTCTTTTCCGCTCAATTGCT TCTTGATTATAACTTATCTGCACTTATTCGCCTCAAAAATTCGATTTTATCCCTTTTTCTATCATCATGTTTCTGTGAAA TTCATTGCTGAAATTCGATTTTACAATTTTTGACTTGCTGTTGCTCATTTTTTAATTGCGTTGCAGAAAAAAAGATGAGT AGGCGTACGAGCAGAACCGTCTACGTTGGAAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTCTATAA GGTAATTTCATTTTCTTTGTTTATTTGCACTTTTATCTGATAATTTGATTTGCTGGGGAAGCGGCGGATTCCTCATTTGA TGTGGGTTGGGTGTCAATGTGTGATAGTGTCGGAGATATTTGATAACCCTAATATTCTTGATAGCATCTATACCTGCATT GCTTTAGGTCTACATTAGTTAAGGTGGGTTTAAAATTTAGGTATTGCAATGCATAGTGATTGCAGTAAGATACCATTTTA CAGTCTCTTTTGGGATAGCGTAGGTCAGATGCGTTATTGATGTGCATGACTGTTAATTGTTTATTGTAGTCCGTCTACTG CGCGATTAATGTTATATTGGGTTTTTCTTTGCTGTTTCTTGATTTTGAGGTTGGTTGTTATATGCTGATAAATTTCACTT TGTGTTTGTAGTATGGAAACATAACTCATATTGACCTAAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTAGAGGTG AGTTTGCATCTACCAAGTTTGATATGAATTTCCGGCTATTTCTTTATATTTTGGTTTATCCTAATTGAGGGCACTGTATT GCAGTTTGAAGACACTCAAGATGCTGAGGATGCAATTCGTGGGCGCGATGGTTATGATTTTGATGGTCACCGTTTACGGG TTGGTTATATTTTTAGAATTACAAGCTTTACTGTTCTGACAACTGCAATTATCCCTACCAAAAGTTGGGGGAAAAACAAG ATAGCTTTAATGAATTGCTGATATTGTTTAAATTTGTATCTTTATAGGTGGAGCTTGCTCATGGTGGACGTGGTAATTCA TCTTCAAGAGATCGATATAGTAGTCATAGCAGTGGTCGTGGTGGACGTGGAGTGTCCAGGCGCTCTGAATATCGTGGTGT GTAGAATTTTGGAACATTTATTAGGTTCTTTCAAGGGATGCTTTGGGTGGGTATGTGTCCTAATTCTTCATGTTTCATGC TCCCTTTTGCAGTTCTAGTCTCTGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGTGAGCTATTGTGTTCATTCT GTTCCAGTTCTATCATATAATTCCAGTTCTATCATATAATGGTTTTCTTTGCTGCAGGATCACATGCGAAAAGCAGGGGA TGTATGCTTTTCCCAAGTTTTTCATGATGGCAGGGGTATGTGGCGTTCAAATAAAAATTTTGTTTCTAGTTTAATTAAGG AGTTTTTTATGTCGATGGTTTATTTTTCCCCTCTCCATTCTCTCTTAGATCTCTCTATGCCATGCTAGCATTTGAGATAG TCTAACGTGTCTGAGATTTTTTTAAGCTTTAAACTATTTTCTCAATTATTTGATGCAGTGTGGTTGGTTTGCAGGTACTA CTGGAATTGTGGATTACACCAACCATGATGATATGAAATATGCTGTGAGTTACTTCTCGACTTGCATGGTTTTATTTATT TTGAAGTGCATGGATAACCTATTAACCTTCAAAGATCTGTGCATATCTCTAATAAATACCTACTAATTTCAACGTTGGTA TTTTCTTTTTCTGCAGGTCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCCGGGGTTATGTTCGTGTATGAC CTCAATTTGATATTTTAAGAGTTATATATTTTTTTCTAGTAAATGCCTACTTCTACTGACTGTTTTCCTCTTTTTCCCAT GTAGGTGAGGCAATATGATTCGAGGCGGGACTCCAGAAGTCCTAGTGGTGGCCCATCTCATTCTAGAGGAAGAAGCTATA GCCGCAGCCGTAGCCGTAGTCGTAGTTATAGTCGGGGCCGAAGCGAAAGGTTTGTTCACCGTGTATTTTAGTCATTCCTT ATGTGAACATTCATTGTTGATTTTTCTTAATTAATTTTGTGTTCATACAGCAAATCTCCAAAGGGTAAATCTTCACCGCG TTCGCCTGCTAAATCTCCAGCAAAATCTGCTTCTCGCTCAAGATCAAGGTCCCGCTCTTTATCAGGGTATGAAATGTTCT TAATGTTTACAAATTTCTCTGATGCGTCTCTCAAAGTAAATTTTATTGATACTGTTGTTTGGAAGACCTAACATCATTAT TTTACCAAATTATTTAGAGCTTCTTAGTCTCTTTAGATTTGTGCAGGGACCAATAGGGTCAACCCTGATGAGGCATATTA ATAGATTGCGTGGGGGGACCATCTGAGTTGTCAATCCCGGGTTCCCATCCCATCCATACCCTGGGATGAATTTCCCATTC CAGCCCAGTTCACTAGCTCAACCATCTCGGCTGGGATCCTGCCCAAAATCCCGACGGGTGTAGGCCCCAGTTTTCCAAAT ATGCCCCCAAATTGTTCGCATTGTGGGTTTTTATTTATAGGGGTATTTTCAGGCTTTCGCAATGGAAAAACCCTAGCCTT TGGTTTTGTTAGATTTTTCCCTCTCTTCTACCCACTTTGTCCCTCTTCTCTGTTCTATCTTCGCACCTTCCCTCTCTTGT CTCTCTTGGACCCATAACTGGTTGGCGACCACCATGACAATACCTCCGGCGAGCATCACCTCTGTTCTACCCACTTTGAC CCCCTTCTCTCTGCTCTATCCTGTAGTTATCATTGATTTAGTATGTGTATGTATGGTATAAATTGTACAAAATATAGGCA AAAATTCACTATCCTGGCCATCCTGCTTTCCAGGATCCCGCTATCCCAGTGTTTAGGCTGGCCGCGCTGAGCTTGAAACT GGGATTGACAACATAGGGGACCATAGAGAATTGAGTATTGAAATGAACAAAACATAAGTAGTTTGAGTTCCGTGTCACGA ATCAGTTGAATCCATGCATATCAAGTCCTCCTTAAGTTAGGATGAACAACTTTTGTTTCAATTGCTTTGTCCTAGTGAAG TCAGTTGTCCGCACCATGTGTGTGTTTGTGTGTGTTCCTTTTTTGTGTTGTTAAGCATCCTAATGAAACTTGTTTTGTTC AAAACCCTTCTTTTTCTGAAAGTGAAAGTCACGCAGAAACTTGTTTGTGAATGAATTGTTATTTATCACTTTTTCTCAAT GAACTTCAGATTTAGTCATTTTTTTCCTAACACACTTGCTCTCTTCTCAGTCCCTTGTCAGTTTTTCCCCTTCATGCATG TTCACGTGCTACCCGGACAAACATGCCTCCTTGTCGGAGTGTTCGCTTTGAGTTTCCTTTTGTTTTTGTGAAAATTCCTT GTTTGTTTTTTCTTAGATATGGAAACTTGCGGCATACTGGATATTGGAATTTAGGATCTTGGTGGGATTTGTTCAATTGC CTGCAACTCAATTTGTTGTAGAGGTATGATATTTTTTAGATGGGCGACTTTGGATACCCTCCCAGTACATCTGTTCTAAT ACTTTTAGCATGTAAATGTCCATGGGTGCTAGATGGGGAATCAAGGAGATCATGGGATTGCCATTTTAGAGCTGGATTTC TTGTGTATAAAGTCAATTGGGATTTGGAAACCACCACCAATGAGGAATAGGAACAATTTCATTACAATTGTCGGCTTCAA GATTACCCAAGCCTGTAGGGTGCACTATCTGGATTCTTTGGATTTTGTGGTGCTGTGGAAGATTTATTTTCTCCAAGCCA CTGGTGTATTAAAATATACCCTGTGATGGTTCTATTTACTTTTTTCATTTTCCATGATATTATTTTGCATTATTATCTAC AATTTGTCCTTTTTAGATCTCTCTCTGTTGGGCTGTTTTATATTTTGAGATGTTTGCTTTTACCTCTCTTGGACATGTTT ACTGTGACATGGGAGAGGCATCAAGGCTATTGGATCAAATTTGATGAGGGAACATGTGGATCTTAAATTCTGTTGTTTGT GGAACTTTTGCAGATCACGGTCAAGGTCCAAGTCTCCATTGCCATTGGTGAGTGAATTTCTTAACTTAAATTGAACATGT GTTTGCCTTCTGTTCCTACTCGTCTTGGCTGAATTTGATGTCGTGATTTGCATCATTGCATGTTGAGCTTGGGTTTGTAT GTGAAATCTCATTTTTCTCGGTGAATCCTCATGTTTTTTAAGTGTTTTTTTTGTGGTTTGAATATTGTACATGGTGTTAG AAAGCATAATTTGCAATTTCAAGTTGAGTTTTGGTAGACTGCCTTCTTTTCCCTCCTTAATTAATGGTTTTCTTTGACAG CGTAACAAAAGCCCCAAGAGGTGCAGTGCAAGCCCCATAAGACGCAGTGCTAGCCCCAAAAGACGCAGTCCTAGCCCCAA AAGGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTTTGTCCAGGTCTTTATCTTAAATTCTTT TGTTTCTCCTGGATTATTTTTCAGTGCATTTGTTGACTTCCTCAAGTTTAATTTTGTTTGTGTGTTGGATTCATGCTCAA CTTTTGGATTTGATTGACCATGGTCTGGCAGGTGAGCTCTGATTTGGCAATTGATGAAGTTGAGGAGGATGATGAGTGCT ACATAGTCTTTCTATTGAATTTACCTTAGCCTAGAAAGAACACCTATTTGGGTTGAAGTTGTTTGAACTTTGAACTCCTT TGAATTGAACTGTAGACTTGTGCCATTGTGCGTCTTAGCTGCTATTGAGGATTTGATGGAACTTAATTTATGTAGTAGAC TATTGGATGTCAAACTTACATTGGTTCCTTATGGCCGGTTTATTTGATAACTGTCATTTGGTATATTATGTTCTCTATTA TTTCGCGTTTTATATTTGTGGTACATCCTTCTGTGTTGGTTTCCGCTCTTCTGTGGAAAAATTTACATTATTCTCGAATT ACCTACTCTATCATTACATAATTTTAATGGAAGTAGGCAAGTAGCACATACTAGGCATGGAAACTTTACTATTATGAAAT ATATTTTGGTCCAAATAACATTAGTGTTTCAAATTCTAACTTTTTGTTGTTGTTATGGTCTGTCTTTACTAAATAAGTGG AAACTGTAGTGACCATTCATTTGTAGAAAATAGGAAAAAGGTTTAACTAGTACGAACTATGAGAATTAAGATTTAAATAC CAACAAGGTGTTGGTCATGTGGCAGGCAATCTAGAGCGTCGTAAGAGTGAGGTCACAAGATCAAATCCTAAGAAAGTCTT TTGTAGGGACTGCCATTGTATCCTGAACATAGTAACGCCTGTCAAGGACAATAAAAAAAGATTTAAATGAGCAAAAATTT AGGGACTAATATTTCAAGTGAAGGGACCTAATCTGTAAGTAAAACATATTTTGGGTTTAATTTAAGTTGTCTGTTTATGG AATCTGATAAGCTGAGTTCTTATGTCTAACAATCCTGGGGTTTAAGTAAAACATATCTTGGGTTTAAGTTGTCTAACTTT GC
CDS sequence (LotjaGi1g1v0765000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGGCGTACGAGCAGAACCGTCTACGTTGGAAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTT CTATAAGTATGGAAACATAACTCATATTGACCTAAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTAGAGTTTGAAG ACACTCAAGATGCTGAGGATGCAATTCGTGGGCGCGATGGTTATGATTTTGATGGTCACCGTTTACGGGTGGAGCTTGCT CATGGTGGACGTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCATAGCAGTGGTCGTGGTGGACGTGGAGTGTCCAG GCGCTCTGAATATCGTGTTCTAGTCTCTGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAG CAGGGGATGTATGCTTTTCCCAAGTTTTTCATGATGGCAGGGGTACTACTGGAATTGTGGATTACACCAACCATGATGAT ATGAAATATGCTGTCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCCGGGGTTATGTTCGTGTGAGGCAATA TGATTCGAGGCGGGACTCCAGAAGTCCTAGTGGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCC GTAGTCGTAGTTATAGTCGGGGCCGAAGCGAAAGCAAATCTCCAAAGGGTAAATCTTCACCGCGTTCGCCTGCTAAATCT CCAGCAAAATCTGCTTCTCGCTCAAGATCAAGGTCCCGCTCTTTATCAGGATCACGGTCAAGGTCCAAGTCTCCATTGCC ATTGCGTAACAAAAGCCCCAAGAGGTGCAGTGCAAGCCCCATAAGACGCAGTGCTAGCCCCAAAAGACGCAGTCCTAGCC CCAAAAGGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTTTGTCCAGGTGA
Protein sequence (LotjaGi1g1v0765000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGYDFDGHRLRVELA HGGRGNSSSRDRYSSHSSGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDD MKYAVKKLDDSEFRNAFSRGYVRVRQYDSRRDSRSPSGGPSHSRGRSYSRSRSRSRSYSRGRSESKSPKGKSSPRSPAKS PAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPKRRSPSPKRRSASRSPSRSRSRSKSLSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 92 | 92 | 1.9E-26 | ||
| PANTHER | 1 | 256 | 256 | 8.1E-135 | – | |
| PANTHER | 1 | 256 | 256 | 8.1E-135 | – | |
| SUPERFAMILY | 5 | 176 | 172 | 2.79E-36 | ||
| ProSiteProfiles | 7 | 82 | 76 | 18.7 | ||
| CDD | 8 | 79 | 72 | 2.90561E-46 | – | |
| SMART | 8 | 78 | 71 | 5.0E-23 | ||
| Pfam | 9 | 76 | 68 | 1.0E-17 | ||
| MobiDBLite | 79 | 108 | 30 | - | – | |
| MobiDBLite | 87 | 102 | 16 | - | – | |
| Gene3D | 110 | 188 | 79 | 3.4E-21 | ||
| ProSiteProfiles | 111 | 189 | 79 | 9.388 | ||
| CDD | 111 | 186 | 76 | 1.41137E-45 | – | |
| SMART | 112 | 185 | 74 | 6.6E-7 | ||
| Pfam | 113 | 175 | 63 | 3.1E-10 | ||
| MobiDBLite | 186 | 315 | 130 | - | – | |
| MobiDBLite | 230 | 267 | 38 | - | – | |
| MobiDBLite | 288 | 304 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0765000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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