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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0797800 |
| Transcript ID | LotjaGi1g1v0797800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/arginine repetitive matrix protein 2; Swiss-Prot: sp|Q95WA4|SWP2_ENCIN Spore wall protein 2; TrEMBL-Plants: tr|A0A072VCN6|A0A072VCN6_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0797800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136805267..136807699) extracted from Lotus japonicus Gifu genome v1.2.
GATTTCTGATACACAGACTCACCAAATTGCTGCTAGAAAGGAAAAGCAGATGGAGACATTGAAAGCTGCTCTTGGCATAG TTTCAGCTGAAGTCCAGGAAGATGGGATTGATGATGGGCCAGGAAATGATGGAAAAGTTGGTGCTAATGCAGAGGGGAAA CATAATTTGAAATCTGAACATTCCTTTTTGGATAGAGATTTCAGTTTGAAAAAACAAATAGTTGAAGTTCAAAAAGATGA AAATGCTAAGAAGGGTCTTAAAGACTCAAGACACCACAAGAAGGGTGAAGCTCGCAAAAGAAAGTATGAGGATGATTCAT CTGATTCAGACAGCAGTAGAGATAATGAGAAGGGACCTAGAAGGAAGCACGATAGGGAGAATACGGACAGCAGTGATGAA TCAGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGAAGGAAAAGAAGAGGAAGGCACCAAAGCATCGCAAGAAAGGCAG GGTGGAGGACAGTGATGATACTGACTCTACTTCTGATTCTGATGACCGTAATGCTGCAAGGAGAACTAACAAAAAATCAG GAAAGAGGCATGTTTCTGATTATCATGAAGGCTCCCCCATGCATAGGCCTAAAGAAGGGAAGCAACACAAGCAGACGAGT AAACGTCGGGGTTCTGAAGAGGGGTCTGATGTTGACAGTGAGGAAAAAAAGAGTGGAAGACTTGAGAAGCAGAAGATGAA GGGGCGTGTTTCAAATGATGAGGACTCTGACAGAGATGGTGTTAGGCGTGTTTCAGGACAAGATAGATATGTTCAAAAGG TGTCACGCTCTTCCTCTTATGAGAGTAGCAGTGACAATGATTCAGACAGCATTTCTAGTGACCACAGTTATGGAAGAGCT AGAAAAAGTGGGACTGTGGCAAAGAAAGGTGGACCTAGGGAGGAAGTAAAGGGCAGAGGTGATGTTGTGGAGAAAGGGAA AAGTCATGCTAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGTAGAGAATTTACGGATGGATCAAATACTAGAA GTCGAGCAATGGCACAGGCCAACAAGAAGATTAATGAAGATAGAGATACGGAGCCTGACACATTTGCTAAGCAGGATGGG CATGATAGGAAGCTTGGAAAAACTGAGTCTGAATCAAAATCTAGAATGTATCAAAACAAAAGTCGAGAAAGGGATGGTTA TTCTAAATCAGCTAAACTTGGAGGGTTTGATTATGAGTCTTCTGAGCAGAGAGGCAGAAATTATAACAGGGATGGTGAGG ATCGGGAAGCAAGAAGGCATGGAAGAAATGATAATGATCTTAGAGAGCAGGAGCAGGAGCATAGAAAGGATAAGGATGAC CATGGAGAAAGAAAGCGTGGAGGAAATGAAGATCATACAGGAAGGAAGCACTTGAGGGGAGAGATTGATCATGGAGAAAG AAAGCACTCAAGGGACGTGGATGATTCTAGAGAAGGAAAGCTCAAAAAGGAGGAAGATGGCCTTGGGGAGAGAAAGCGTG GAAGAGATGAAGCTGATCCTAGAGAAGGAAAGCTAAAAAGGGATGAAGATGGCCTTGGGGAGAGAAAGCGTGGAAGAGAT GAAGACGATCCTAGAGAAGGAAAACTAAAAAGAGATGAAGATGGCCATGGAGAGAGAAAGCATGGAAGAGATGAAGATGA CCATGTAGGAAGAAAGCAATCAAGGTATGCAGATGATCCTAGAGAAGGAAAGCTCAGAAGGGATGAAGATGGCCATGGAG AGAGAAAGCATGGAAGAGATGAAGATGATCATGTAGGAAGAAAGCACTTTAGGGATGAGGATGATCATGGTGAAAGAAAG CATGAGAGGGATGAGGGTGATAATAGAGAAGTAAAATACAGAAGGTATGAGGATGGCCTTGGAGAAAGAAAGAACTCAAG GGATGAGGATGGCCATGGAGAGAGAAAGAAACTAAAGGATGGGGATGGTCATTGGGAAAGACAACGCAGAAGGGATGATG ATTATCATGCAGAAAGAAAGCCTAGAAGGGATGGTGATTATCATGGACATGGAGAGAGAAAGCAGCACAGTAGGGATGAT GATGGCCGTGGAGAAAGAAAGCACAAAAGCTAGTGCTGGAGGAAGAGCAGGGTAGCCATGGTGATTACTCCAAAAGAGCC ATGATTCACGTTTGAGAGCTATGAAAGTGACTCCTGAACTTGGACCAGGCATTTAGAATGGTTATTTACTACTTTAATCT CTGAATACTTTTATAAAGCGTGTAATATGTTAATGTTTGCTTAGATTTGAAGTTGAGTTGTGACTGTAATTTTGCGTTTT TATAAGAAAAGTCTAGACGTATGTTTGCTAGACTGGAAACATTGGAGTTGCTATTTCCATGAATGACAGAATCCTTTTCT TGTGCAGCATGGGTGTTTCCTTTAATTTTTTCC
CDS sequence (LotjaGi1g1v0797800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACATTGAAAGCTGCTCTTGGCATAGTTTCAGCTGAAGTCCAGGAAGATGGGATTGATGATGGGCCAGGAAATGA TGGAAAAGTTGGTGCTAATGCAGAGGGGAAACATAATTTGAAATCTGAACATTCCTTTTTGGATAGAGATTTCAGTTTGA AAAAACAAATAGTTGAAGTTCAAAAAGATGAAAATGCTAAGAAGGGTCTTAAAGACTCAAGACACCACAAGAAGGGTGAA GCTCGCAAAAGAAAGTATGAGGATGATTCATCTGATTCAGACAGCAGTAGAGATAATGAGAAGGGACCTAGAAGGAAGCA CGATAGGGAGAATACGGACAGCAGTGATGAATCAGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGAAGGAAAAGAAGA GGAAGGCACCAAAGCATCGCAAGAAAGGCAGGGTGGAGGACAGTGATGATACTGACTCTACTTCTGATTCTGATGACCGT AATGCTGCAAGGAGAACTAACAAAAAATCAGGAAAGAGGCATGTTTCTGATTATCATGAAGGCTCCCCCATGCATAGGCC TAAAGAAGGGAAGCAACACAAGCAGACGAGTAAACGTCGGGGTTCTGAAGAGGGGTCTGATGTTGACAGTGAGGAAAAAA AGAGTGGAAGACTTGAGAAGCAGAAGATGAAGGGGCGTGTTTCAAATGATGAGGACTCTGACAGAGATGGTGTTAGGCGT GTTTCAGGACAAGATAGATATGTTCAAAAGGTGTCACGCTCTTCCTCTTATGAGAGTAGCAGTGACAATGATTCAGACAG CATTTCTAGTGACCACAGTTATGGAAGAGCTAGAAAAAGTGGGACTGTGGCAAAGAAAGGTGGACCTAGGGAGGAAGTAA AGGGCAGAGGTGATGTTGTGGAGAAAGGGAAAAGTCATGCTAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGT AGAGAATTTACGGATGGATCAAATACTAGAAGTCGAGCAATGGCACAGGCCAACAAGAAGATTAATGAAGATAGAGATAC GGAGCCTGACACATTTGCTAAGCAGGATGGGCATGATAGGAAGCTTGGAAAAACTGAGTCTGAATCAAAATCTAGAATGT ATCAAAACAAAAGTCGAGAAAGGGATGGTTATTCTAAATCAGCTAAACTTGGAGGGTTTGATTATGAGTCTTCTGAGCAG AGAGGCAGAAATTATAACAGGGATGGTGAGGATCGGGAAGCAAGAAGGCATGGAAGAAATGATAATGATCTTAGAGAGCA GGAGCAGGAGCATAGAAAGGATAAGGATGACCATGGAGAAAGAAAGCGTGGAGGAAATGAAGATCATACAGGAAGGAAGC ACTTGAGGGGAGAGATTGATCATGGAGAAAGAAAGCACTCAAGGGACGTGGATGATTCTAGAGAAGGAAAGCTCAAAAAG GAGGAAGATGGCCTTGGGGAGAGAAAGCGTGGAAGAGATGAAGCTGATCCTAGAGAAGGAAAGCTAAAAAGGGATGAAGA TGGCCTTGGGGAGAGAAAGCGTGGAAGAGATGAAGACGATCCTAGAGAAGGAAAACTAAAAAGAGATGAAGATGGCCATG GAGAGAGAAAGCATGGAAGAGATGAAGATGACCATGTAGGAAGAAAGCAATCAAGGTATGCAGATGATCCTAGAGAAGGA AAGCTCAGAAGGGATGAAGATGGCCATGGAGAGAGAAAGCATGGAAGAGATGAAGATGATCATGTAGGAAGAAAGCACTT TAGGGATGAGGATGATCATGGTGAAAGAAAGCATGAGAGGGATGAGGGTGATAATAGAGAAGTAAAATACAGAAGGTATG AGGATGGCCTTGGAGAAAGAAAGAACTCAAGGGATGAGGATGGCCATGGAGAGAGAAAGAAACTAAAGGATGGGGATGGT CATTGGGAAAGACAACGCAGAAGGGATGATGATTATCATGCAGAAAGAAAGCCTAGAAGGGATGGTGATTATCATGGACA TGGAGAGAGAAAGCAGCACAGTAGGGATGATGATGGCCGTGGAGAAAGAAAGCACAAAAGCTAG
Protein sequence (LotjaGi1g1v0797800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
METLKAALGIVSAEVQEDGIDDGPGNDGKVGANAEGKHNLKSEHSFLDRDFSLKKQIVEVQKDENAKKGLKDSRHHKKGE ARKRKYEDDSSDSDSSRDNEKGPRRKHDRENTDSSDESDSDSDAKRKVKKEKKRKAPKHRKKGRVEDSDDTDSTSDSDDR NAARRTNKKSGKRHVSDYHEGSPMHRPKEGKQHKQTSKRRGSEEGSDVDSEEKKSGRLEKQKMKGRVSNDEDSDRDGVRR VSGQDRYVQKVSRSSSYESSSDNDSDSISSDHSYGRARKSGTVAKKGGPREEVKGRGDVVEKGKSHAKVDGLDSLRKSYG REFTDGSNTRSRAMAQANKKINEDRDTEPDTFAKQDGHDRKLGKTESESKSRMYQNKSRERDGYSKSAKLGGFDYESSEQ RGRNYNRDGEDREARRHGRNDNDLREQEQEHRKDKDDHGERKRGGNEDHTGRKHLRGEIDHGERKHSRDVDDSREGKLKK EEDGLGERKRGRDEADPREGKLKRDEDGLGERKRGRDEDDPREGKLKRDEDGHGERKHGRDEDDHVGRKQSRYADDPREG KLRRDEDGHGERKHGRDEDDHVGRKHFRDEDDHGERKHERDEGDNREVKYRRYEDGLGERKNSRDEDGHGERKKLKDGDG HWERQRRRDDDYHAERKPRRDGDYHGHGERKQHSRDDDGRGERKHKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 13 | 44 | 32 | - | – | |
| MobiDBLite | 61 | 687 | 627 | - | – | |
| MobiDBLite | 82 | 127 | 46 | - | – | |
| MobiDBLite | 142 | 165 | 24 | - | – | |
| MobiDBLite | 173 | 243 | 71 | - | – | |
| MobiDBLite | 247 | 276 | 30 | - | – | |
| MobiDBLite | 284 | 320 | 37 | - | – | |
| MobiDBLite | 321 | 336 | 16 | - | – | |
| MobiDBLite | 337 | 387 | 51 | - | – | |
| MobiDBLite | 400 | 687 | 288 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0797800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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