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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0063500 |
| Transcript ID | LotjaGi2g1v0063500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short chain dehydrogenase/reductase; TAIR: AT5G51030.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9M2E2|SDR1_ARATH (+)-neomenthol dehydrogenase; TrEMBL-Plants: tr|I1L2S0|I1L2S0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0063500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:14719199..14723104) extracted from Lotus japonicus Gifu genome v1.2.
CCACTATTCTGTCTTTGCAGGATTCCTCTTTTTAGTCATAGGTAAGTTGTAACACAAGCATGGTGATGAATCTGGAGTTG AACAAAGTTGGTGCATAGATAAGAGAGATGGGAAATAAGGAAAAGGCAAAGGAACGAAGAGAACAGAGACTTCACGAGAT TCGGCTTCTGAGGACCATTCCCTATTCTGATCACCAAAGGTTCCAAATTTTCTATCTATTTAATCACTTCCTCTTGAAAA CCCTTTTGGATTTCGAAGTCTACAAATTCAATAACAACTGGCACTGAGTTAGGTCACTTTGTTAGTTGGTTTTTTATTTC TTTGTTCAATTTTGGTGTGTGATAATATGTTAAGAACTTAGTCTTAGGTTGACCTTTGTACTCACTCACCAGATATTCAA TTTCATGTACCTTCAAGGCAATGAAGGAAAAATTGTTATTTAGCTTCCAGTGAATTTCCCAATGTACATGGGATTATTGA ACTCCGCCGCTGCTAGGTTATGGTGTAAAATTTGAACAGAATAGAAATTCTGCAAATGTGCAATTGTATTCCCTTCTCTT TCTGTTAATGTTCTGTTCCGGGTGTCGGTAACCTGGATATTCGTGCTTCAGAACAGTTGATCTGGAGGAATTGCAACAAG CCTTGATTCCGACATGGAGGTATATGGTGGGGGTACATGCAAGAAACACTAATGCTCAAGTCTGATGAGAGTATGTGTGA TATCAATGAGGGAGAGTTTCAATGATACCACCATTAGTCTTATCCATAAGTATTTGTATCTGTATATTTCCCAACATATT TCTCAGGTGTGATAGGTAGTTAGGCGTTACAGTTTTGCTGATGTGTTGGCTAACTGCGCGTAAAGTTACGGCGAATATTC CATGCTGACATGTTTCTAGTGTTTAGCTTCGCAGGAAAGATAAGCTATTTACTGAGCCTTTGGTTCTGAGCCTGGCCTAT CTTGTATATATGACTCAGATTCGGGTCATCAGATCACGGTCCAGAACACTTCCATTCCACCATTTTTAGTGAATGTTATG TACTGATTTTTTTTAAAAATTATATCATATTCTATTCTTCTTTTAAATAATATGTATCACATATAGAAAATAACTTATAT GTTATGTTATGATGTATCTATCTTATGCTACCTCAGAGTGCTGCCTGTTGCACATTCGCTGAGTATGTAAATGCTTAGCA TGTGTTTTATTTTACAAGAGTTGGTATTTAAGCCTGTAAAGTGTAACTTCTTCATAGCCTGTTCTAACTTTCGTCGATTC GAGTGTTTATAGGTGGTGGTCCAAGGAAACTGTTGCTGTGGTTACTGGTGGAAACAGAGGTATTGGGTTTGAGATTTGTA GACAACTTGCTGCTCATGGATTGACTGTTATACTGACATCAAGAGATGCTACTGCTGGTGTTGAATCAATTAAGGTTTTG CAAGAAAGTGGTCTGGATGTGGTTTATCATCAACTTGACGTAGTAGATTATTCATCCATCAACCAGTTTGTTGAGTGGTT GCAGGAAAACTATGGTGGTTTAGATATTCTGGTCAGTTTCTATACTGTGCATTCTTCCATGTAGTTTGATTTTAACTAAA TTAGCATATGCTGTTGGAATCTAACAATTTTATCTATTTTGGTTACTTCTTCTTATGTCAACTTCTGTTATATTAACAAA TTTATTTTAGATTTTATTAATATTTGATCTTACTATTCTAAACTTATACTAGGAACAATAAAGATTAGTGTACACCAATG GGTAGACCATTAGAGAGAGGTAGGAAGATAGGAGAGATAAGTGATAGATGTGATATGTGATGTAACCGGGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGTTGTTCCAAGGTGTATGCATC ATTACTGTAGTAGGAACTCTGGAGAAGATCAGAAGATGGTTGAACACATATTTTATGCTTCCCTGCAGGTAAACAATGCT GGTGTTAATTTCAATCTCGGGTCTGATAATTCAGTTGAAAATGCTCGCAAGGTTATTGAAACAAATTATTATGGCACTAA GAATTTGACTGATGCTATTATCCCATTGATGAAATCATCCCTCCTTGGTGCTCGAATTGTTAATGTAAGCTCACGTCTAG GTCGACTAAATGGAAGAAGGAATGTAAGTAAAAATTCCTTGACAATGTATGCTAAAAAACTGTATTCATATAATGAATGA ACAATGTTTAGAATATTTTGATATTTGATTCTCTCTCTTTTGAGTACTCTCACGTTTCTTTGATTTTCTTGCAGTTTCTC TTGCCTTCTTCAAAGTTAAAAATGCATTTCATTGTCTTCTTCTTGGGGTTAGACTAGACATTTTATCTCACACATAAATG TTCTTGTTCTCAAATAGAAAAAAAATGCGCAATTTTTTTCTCTTGCTGTTACTACCCAAAATTGCTTTCTGGCATAAATT GCCTAATATGGTGAAGTAGTTCGTTATAGAAGCTGTAGTGAAAGTGTGTCTGGATACCAGTTGAGTACAACGTCAACAAA CTTTCATCTCAATCTATAAGAAAAGTTTCCTTAACTTTTTACCTTGAAATTAGTGCTAATGTTCGTTTGCGCCGCTGACA ACGAGTATCCAAACATAGCCTAAATTGCATATATTGGAACAGAATTCCTTTTCTCAACTTAACATTATTATTTAAATAAA ATGAAGAAACCTTTGAATTGCTACAACTCCTTCTAGCATTCTCTAATGATGCATAAACAATATATTATTAGAACGTACAT TTTGTGGCAAATTATTTTTTATATGGTTGGTTGAGTTTGTAGTGGAACCAACGTGCCCTATATGACTTTTGCTAGATTCA AAGCTGATAATGTGTTGTTTGAGTTACAGAGAATCAGCACCGTAGCCTTGAGGGAACAACTGAGTAATGTGGAATCCCTT TCAGAGGAACTTATTGGCATGACTGTATCCACTTTTTTACAACAAGTAGAAGATGGAACTTGGACATCAGGTGGGTGGCC TCAAACATATACTGACTACTCCGTGTCGAAACTTGCAGTGAATGCTTATACAAGGCTTATGGCTAGGAAGCTTTCTGAGA GACCAGAAGGTCACAAAATTTATGTTAATTGCTATTGCCCGGGTTGGGTGAAGACAGCTCTTACAGGTTATGCAGGGAAT AATACTGTTGAGGAGGGTGCTGATACTGGAGTATGGCTTGCCCTTCTGTCGGACCAAACAAGCATGGGAACTTTTTTTGC GGAGAGACGGGAAATAAACTTTTAACGTGTTGCTTACTGGGATTAGAAGAATTAATTTAGAAAGCATTTGAATGCCTGTT TCACTCTCTGAGCAAGCTAAATCTCATTTTCCGATGAAGAAAACCTGAAAGCAAGGGACGCAGAGCATTAGAGTTCAAAA GAAGGGAAGCCCAGGGCACAAAGCTCCTGCATGTGCAGGGTCCGGCCATTTGGTCTATTGTAGCATCCTCACCTTGTTTT TTACACAAGAGTTAACACTCTTTAATCGCTACTGACTTGTACAATTTTCAAAGGAAAAAAAGTATGGAAATCAGTCTGTT GGCATTTGGCAACAGTTTGCTAGCAAGTTTAAAGTCTCTTTTTGTAAACATGTAGTTTTTTCAGTGATAAGCTATGCTTC TCCACAAGTTGTAACAACAATTTTACTTTGGGGAACCCAGATGGGATTGGGGTCAAGTATGACATGAATACCATTGGAAT TTGGTTGGAAATTATTAATAAGTATTTGATAGGAACAAAATTTATTATGAAGTAATTATATGGCTCTGGTTTTAGAGAGT TAGTCTCCTATAGATTATGGAATCTCGATAGTCTAGCCTCTCCCTAAGACAACCGCCAATATGGTT
CDS sequence (LotjaGi2g1v0063500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAATAAGGAAAAGGCAAAGGAACGAAGAGAACAGAGACTTCACGAGATTCGGCTTCTGAGGACCATTCCCTATTC TGATCACCAAAGGTGGTGGTCCAAGGAAACTGTTGCTGTGGTTACTGGTGGAAACAGAGGTATTGGGTTTGAGATTTGTA GACAACTTGCTGCTCATGGATTGACTGTTATACTGACATCAAGAGATGCTACTGCTGGTGTTGAATCAATTAAGGTTTTG CAAGAAAGTGGTCTGGATGTGGTTTATCATCAACTTGACGTAGTAGATTATTCATCCATCAACCAGTTTGTTGAGTGGTT GCAGGAAAACTATGGTGGTTTAGATATTCTGGTAAACAATGCTGGTGTTAATTTCAATCTCGGGTCTGATAATTCAGTTG AAAATGCTCGCAAGGTTATTGAAACAAATTATTATGGCACTAAGAATTTGACTGATGCTATTATCCCATTGATGAAATCA TCCCTCCTTGGTGCTCGAATTGTTAATGTAAGCTCACGTCTAGGTCGACTAAATGGAAGAAGGAATAGAATCAGCACCGT AGCCTTGAGGGAACAACTGAGTAATGTGGAATCCCTTTCAGAGGAACTTATTGGCATGACTGTATCCACTTTTTTACAAC AAGTAGAAGATGGAACTTGGACATCAGGTGGGTGGCCTCAAACATATACTGACTACTCCGTGTCGAAACTTGCAGTGAAT GCTTATACAAGGCTTATGGCTAGGAAGCTTTCTGAGAGACCAGAAGGTCACAAAATTTATGTTAATTGCTATTGCCCGGG TTGGGTGAAGACAGCTCTTACAGGTTATGCAGGGAATAATACTGTTGAGGAGGGTGCTGATACTGGAGTATGGCTTGCCC TTCTGTCGGACCAAACAAGCATGGGAACTTTTTTTGCGGAGAGACGGGAAATAAACTTTTAA
Protein sequence (LotjaGi2g1v0063500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNKEKAKERREQRLHEIRLLRTIPYSDHQRWWSKETVAVVTGGNRGIGFEICRQLAAHGLTVILTSRDATAGVESIKVL QESGLDVVYHQLDVVDYSSINQFVEWLQENYGGLDILVNNAGVNFNLGSDNSVENARKVIETNYYGTKNLTDAIIPLMKS SLLGARIVNVSSRLGRLNGRRNRISTVALREQLSNVESLSEELIGMTVSTFLQQVEDGTWTSGGWPQTYTDYSVSKLAVN AYTRLMARKLSERPEGHKIYVNCYCPGWVKTALTGYAGNNTVEEGADTGVWLALLSDQTSMGTFFAERREINF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 313 | 311 | 1.5E-181 | – | |
| PANTHER | 3 | 313 | 311 | 1.5E-181 | – | |
| Gene3D | 30 | 313 | 284 | 1.4E-80 | – | |
| PRINTS | 38 | 55 | 18 | 3.5E-22 | ||
| SUPERFAMILY | 38 | 300 | 263 | 2.06E-57 | ||
| Pfam | 38 | 177 | 140 | 1.1E-32 | ||
| CDD | 38 | 313 | 276 | 1.57693E-95 | – | |
| PRINTS | 112 | 123 | 12 | 3.5E-22 | ||
| PRINTS | 112 | 123 | 12 | 2.5E-10 | ||
| PRINTS | 165 | 173 | 9 | 2.5E-10 | ||
| Pfam | 229 | 276 | 48 | 1.0E-5 | ||
| PRINTS | 232 | 251 | 20 | 2.5E-10 | ||
| PRINTS | 232 | 251 | 20 | 3.5E-22 | ||
| PRINTS | 257 | 274 | 18 | 3.5E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0063500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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