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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0131300 |
Transcript ID | LotjaGi2g1v0131300.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tubby-like F-box protein; TAIR: AT1G76900.1 tubby like protein 1; Swiss-Prot: sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1; TrEMBL-Plants: tr|A0A0J8D5S6|A0A0J8D5S6_BETVU Tubby-like F-box protein; Found in the gene: LotjaGi2g1v0131300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47580414..47581598) extracted from Lotus japonicus Gifu genome v1.2.
AGGCTTCCCGGCCATCACAGGGGCAAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAG CAGGTGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTC GTAAGCACGTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTA AGTGGGAAGATTACTTTCCCTGTTTCACTAAAGCAGGTAATGCTTTCGTAATCTTCTACCATTTGTTCCAGATATATTTT AATGGAACTCGTTAATGCATAAGAAATATACATTTTGCACATGAGTGAATGAATTTGCTTTTCGCTTTTTTATTGACCCT TGCTTTACAGCCTGGTGCTAGGGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTAATATGACTTATCACCTAT TCCTTTGTCTTAGTCCTGGTAAGTTCAAGCTCTTTGCAATGGCCTACTTTTTGTTTACTGTGTTCATTTAGTTGAGCAAT TATTTTCTGGTTGCCAAGGTATGGAATGGATAGTTGATACTGTTTGTTTGGAAGCTTGTCTATCATCCTTTTAAACGATA TTAAGAGCATAATATGGGGCATACTGTTGTGTTAAGAAATTTTTTCTGTGTTATGCTTAAGTTATCTCTGTAAAGCCAAG GTTAGCTGGAAGCTGGGAATCATGAGCACGTTCATGGCTTCATGGCTCATGCTCCATTTTTTTCATTCTTCTTGAAATAG CCAACTTCTAATTTTAGTCTATTGATTTAAGTGCTTGCTATGCTGGCTACTCAAATGGCACAAGTAGTTCCATAGTTTGA TTGAAATGCTATCAATATATCTCTATAGCCTATAAACATATATTAGAAATTTTGTGAACTTGGTTGTCATTGTCTCTGCA CTGGGATATGTTTTGAATTACAATTTTTCCTGCAGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGA GCAGAAGAACGACATGCACTGAGTACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGGA AAACTAAGGTATTTTGGAATTCTAGTTTCTTTTTCTCCCTGAGCACCTTCAATCATTGTTTTTGA
CDS sequence (LotjaGi2g1v0131300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAAGATTACTTTCCCTGTTTCACTAAAGCAGCCTGGTGCTAG GGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTAATATGACTTATCACCTATTCCTTTGTCTTAGTCCTGCCT TGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGCAGAAGAACGACATGCACTGAGTACATTATATCCATA GATGCGGATAATATATCAAGATCTAGTAGCACATACATTGGAAAACTAAGGTATTTTGGAATTCTAGTTTCTTTTTCTCC CTGA
Protein sequence (LotjaGi2g1v0131300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCKEIVSSPELSGKITFPVSLKQPGARDGHIQCFIKRDKSNMTYHLFLCLSPALLVENGKFLLSAKRSRRTTCTEYIISI DADNISRSSSTYIGKLRYFGILVSFSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 99 | 99 | 3.2E-63 | – | |
PANTHER | 1 | 99 | 99 | 3.2E-63 | – | |
SUPERFAMILY | 9 | 97 | 89 | 1.28E-22 | ||
Gene3D | 17 | 102 | 86 | 1.9E-25 | ||
Pfam | 23 | 98 | 76 | 6.0E-23 | ||
PRINTS | 76 | 92 | 17 | 1.4E-5 | ||
PRINTS | 92 | 107 | 16 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0131300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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